Wall clock time and date at job start Tue Mar 31 2020 15:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52999 * 109.49938 * 178.65416 * 13 12 11 16 16 N 1.46489 * 109.47409 * 184.99872 * 15 13 12 17 17 C 1.34782 * 120.00456 * 179.97438 * 16 15 13 18 18 O 1.21716 * 119.99686 * 359.97438 * 17 16 15 19 19 C 1.46466 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.36687 * 125.44490 * 179.71824 * 19 17 16 21 21 C 1.37408 * 113.31561 * 179.83346 * 20 19 17 22 22 C 1.34013 * 115.06979 * 0.45452 * 21 20 19 23 23 Cl 1.73595 * 124.53045 * 179.72348 * 22 21 20 24 24 S 1.70620 * 110.93580 * 359.74876 * 22 21 20 25 25 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 26 26 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 28 28 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 29 29 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 30 30 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 31 31 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 32 32 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 33 33 H 1.09008 * 109.46814 * 304.99971 * 15 13 12 34 34 H 1.08999 * 109.47358 * 64.99528 * 15 13 12 35 35 H 0.97004 * 120.00270 * 359.97438 * 16 15 13 36 36 H 1.08005 * 123.34259 * 0.02562 * 20 19 17 37 37 H 1.08001 * 122.46405 * 180.21931 * 21 20 19 38 38 H 1.09004 * 109.58771 * 246.19814 * 25 9 7 39 39 H 1.08998 * 109.58854 * 6.63257 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4102 -6.0017 0.4468 16 7 3.6758 -5.9476 -0.2888 17 6 4.1733 -7.0639 -0.8571 18 8 3.5712 -8.1171 -0.7588 19 6 5.4391 -7.0099 -1.5921 20 6 6.0458 -8.0704 -2.2049 21 6 7.2252 -7.7375 -2.8263 22 6 7.5798 -6.4496 -2.7192 23 17 9.0218 -5.7658 -3.4023 24 16 6.4247 -5.5720 -1.8209 25 6 1.8152 -3.6539 -0.1863 26 1 -0.4850 0.8399 -0.0004 27 1 0.1001 -1.3265 1.6691 28 1 -0.6743 -2.6384 0.7459 29 1 1.3517 -2.9480 3.0109 30 1 -0.3776 -3.3672 3.0687 31 1 0.9907 -5.3887 2.6790 32 1 -0.0199 -5.0363 1.2570 33 1 2.5022 -6.7019 1.2773 34 1 1.6155 -6.3332 -0.2214 35 1 4.1560 -5.1084 -0.3669 36 1 5.6371 -9.0701 -2.2035 37 1 7.8244 -8.4614 -3.3587 38 1 1.0392 -4.0654 -0.8318 39 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267090226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:16 Heat of formation + Delta-G solvation = 1.754765 kcal Electronic energy + Delta-G solvation = -22876.591682 eV Core-core repulsion = 19357.894408 eV Total energy + Delta-G solvation = -3518.697274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.91251 -38.27933 -37.69745 -36.82108 -34.90418 -33.07746 -30.87166 -30.47279 -29.57976 -26.09627 -25.32610 -24.58133 -22.24384 -21.64586 -20.91345 -19.81998 -19.29582 -18.62537 -16.80517 -16.45848 -16.13946 -15.50870 -15.32560 -14.84907 -14.45883 -14.06947 -13.93470 -13.67252 -13.59606 -13.46950 -12.97631 -12.83763 -12.38859 -12.33387 -12.21547 -11.80743 -11.69197 -11.33526 -11.15021 -11.05194 -10.73622 -10.54197 -10.30672 -10.24208 -10.17750 -9.94938 -9.62989 -9.46205 -9.20919 -9.01437 -8.92901 -8.49641 -6.71314 -5.82631 -3.25416 0.03655 0.66697 1.35904 1.77760 1.96154 3.03592 3.07332 3.34236 3.42028 3.43607 4.44826 4.61849 4.76973 4.96859 5.03913 5.24662 5.38806 5.41600 5.44229 5.56700 5.65279 5.78118 5.83287 5.88588 5.95137 6.18419 6.25165 6.32097 6.37374 6.54751 6.65976 6.72394 6.81829 6.91102 7.36339 7.38164 7.64293 7.75204 8.04230 8.40622 9.16999 9.80513 10.37188 11.25598 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003290 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.034397 B = 8508.185260 C =10570.230954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.074 0.926 15 C 0.127 3.873 16 N -0.717 5.717 17 C 0.588 3.412 18 O -0.530 6.530 19 C -0.256 4.256 20 C -0.053 4.053 21 C -0.135 4.135 22 C -0.171 4.171 23 Cl -0.008 7.008 24 S 0.264 5.736 25 C 0.153 3.847 26 H 0.254 0.746 27 H 0.087 0.913 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.020 0.980 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.352 -13.825 -2.355 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.140 4.140 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.368 5.368 17 C 0.373 3.627 18 O -0.409 6.409 19 C -0.378 4.378 20 C -0.086 4.086 21 C -0.168 4.168 22 C -0.317 4.317 23 Cl 0.020 6.980 24 S 0.530 5.470 25 C 0.026 3.974 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.179 0.821 37 H 0.172 0.828 38 H 0.038 0.962 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.797 -12.794 -1.894 18.195 hybrid contribution 1.050 -0.133 -0.707 1.273 sum 13.847 -12.928 -2.601 19.121 Atomic orbital electron populations 1.70036 1.05297 1.25534 1.53623 1.25028 0.95242 0.98406 1.00798 0.86321 0.79258 0.83797 0.77648 1.21438 1.21537 1.20393 1.19155 0.92667 0.84859 1.41822 0.91722 1.44049 1.36047 1.01200 1.50039 1.20805 0.88510 0.98453 0.87967 1.22167 1.00143 0.95884 0.99863 1.21335 0.96624 0.97822 0.97940 1.22064 0.99015 0.93389 0.99552 0.90745 1.21553 0.84134 0.98391 0.95527 1.45984 1.25245 1.10804 1.54767 1.16828 0.83005 0.84270 0.78552 1.90835 1.59892 1.29603 1.60568 1.24853 1.02547 0.98478 1.11882 1.20619 0.93163 1.00035 0.94751 1.20065 0.98332 0.94787 1.03651 1.25057 0.98210 0.99062 1.09397 1.98391 1.32956 1.83837 1.82810 1.83496 1.09754 1.08306 1.45408 1.20994 0.97475 0.86946 0.91986 0.93605 0.89522 0.96411 0.92724 0.93130 0.93364 0.92395 0.91514 0.91112 0.76473 0.82081 0.82830 0.96188 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.19 55.49 0.62 -25.00 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.17 2.99 -172.06 -0.51 -14.69 16 10 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.10 -1.57 5.16 -26.69 -0.14 -1.70 16 13 C -0.12 -1.89 2.38 -90.27 -0.22 -2.11 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.78 5.07 -4.05 -0.02 1.76 16 16 N -0.72 -9.53 5.33 -61.69 -0.33 -9.85 16 17 C 0.59 8.21 7.78 -12.94 -0.10 8.10 16 18 O -0.53 -8.92 16.84 5.17 0.09 -8.84 16 19 C -0.26 -2.95 6.45 -36.83 -0.24 -3.19 16 20 C -0.05 -0.53 10.01 -40.44 -0.40 -0.93 16 21 C -0.14 -1.18 10.08 -41.37 -0.42 -1.60 16 22 C -0.17 -1.62 6.82 29.25 0.20 -1.42 16 23 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 24 S 0.26 2.62 22.15 -107.50 -2.38 0.23 16 25 C 0.15 2.99 5.63 -3.48 -0.02 2.97 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.90 6.83 -40.82 -0.28 4.62 16 36 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.92 7.16 -51.93 -0.37 0.55 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -30.06 349.54 -10.72 -40.79 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.16 Total: 1.45 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.76 Total: -3.85 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.22 Total: -49.54 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.38 Total: 0.23 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.06 -10.72 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267090226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.540 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds