Wall clock time and date at job start Tue Mar 31 2020 15:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52999 * 109.49938 * 178.65416 * 13 12 11 16 16 N 1.46489 * 109.47409 * 184.99872 * 15 13 12 17 17 C 1.34782 * 120.00456 * 179.97438 * 16 15 13 18 18 O 1.21716 * 119.99686 * 359.97438 * 17 16 15 19 19 C 1.46466 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.36687 * 125.44490 * 179.71824 * 19 17 16 21 21 C 1.37408 * 113.31561 * 179.83346 * 20 19 17 22 22 C 1.34013 * 115.06979 * 0.45452 * 21 20 19 23 23 Cl 1.73595 * 124.53045 * 179.72348 * 22 21 20 24 24 S 1.70620 * 110.93580 * 359.74876 * 22 21 20 25 25 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 26 26 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 28 28 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 29 29 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 30 30 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 31 31 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 32 32 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 33 33 H 1.09008 * 109.46814 * 304.99971 * 15 13 12 34 34 H 1.08999 * 109.47358 * 64.99528 * 15 13 12 35 35 H 0.97004 * 120.00270 * 359.97438 * 16 15 13 36 36 H 1.08005 * 123.34259 * 0.02562 * 20 19 17 37 37 H 1.08001 * 122.46405 * 180.21931 * 21 20 19 38 38 H 1.09004 * 109.58771 * 246.19814 * 25 9 7 39 39 H 1.08998 * 109.58854 * 6.63257 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4102 -6.0017 0.4468 16 7 3.6758 -5.9476 -0.2888 17 6 4.1733 -7.0639 -0.8571 18 8 3.5712 -8.1171 -0.7588 19 6 5.4391 -7.0099 -1.5921 20 6 6.0458 -8.0704 -2.2049 21 6 7.2252 -7.7375 -2.8263 22 6 7.5798 -6.4496 -2.7192 23 17 9.0218 -5.7658 -3.4023 24 16 6.4247 -5.5720 -1.8209 25 6 1.8152 -3.6539 -0.1863 26 1 -0.4850 0.8399 -0.0004 27 1 0.1001 -1.3265 1.6691 28 1 -0.6743 -2.6384 0.7459 29 1 1.3517 -2.9480 3.0109 30 1 -0.3776 -3.3672 3.0687 31 1 0.9907 -5.3887 2.6790 32 1 -0.0199 -5.0363 1.2570 33 1 2.5022 -6.7019 1.2773 34 1 1.6155 -6.3332 -0.2214 35 1 4.1560 -5.1084 -0.3669 36 1 5.6371 -9.0701 -2.2035 37 1 7.8244 -8.4614 -3.3587 38 1 1.0392 -4.0654 -0.8318 39 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267090226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:15 Heat of formation + Delta-G solvation = -15.436523 kcal Electronic energy + Delta-G solvation = -22877.337152 eV Core-core repulsion = 19357.894408 eV Total energy + Delta-G solvation = -3519.442744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99559 -39.46257 -38.79267 -37.58594 -36.29082 -34.71206 -32.32506 -32.18662 -30.58556 -27.34984 -27.09882 -25.57644 -23.83097 -22.93167 -22.16022 -20.95172 -20.45431 -19.66827 -18.62732 -17.40506 -17.16415 -16.83378 -16.59838 -16.24508 -15.80924 -15.50058 -15.06298 -14.99145 -14.75023 -14.51006 -14.39066 -14.03483 -13.79500 -13.62772 -13.60752 -13.00397 -12.88040 -12.59813 -12.52096 -12.43740 -12.25958 -11.96834 -11.88098 -11.81971 -11.58339 -11.44085 -11.15417 -11.06579 -10.51873 -10.27314 -9.78818 -9.76225 -8.66575 -7.85623 -5.30999 -0.77784 -0.10457 0.58541 1.03349 1.17412 1.47593 1.49787 1.59069 2.02253 2.06186 2.52408 3.29527 3.57010 3.69929 3.98259 4.00511 4.03003 4.07130 4.26261 4.42297 4.56193 4.60609 4.73781 4.75837 4.86780 4.88189 4.93629 5.01078 5.11647 5.12482 5.18648 5.31902 5.36101 5.44585 5.58738 5.68461 5.80375 6.32288 6.40686 6.98452 7.16426 7.87799 8.39636 9.20591 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003290 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.034397 B = 8508.185260 C =10570.230954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.102 4.102 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.715 5.715 17 C 0.590 3.410 18 O -0.565 6.565 19 C -0.282 4.282 20 C -0.044 4.044 21 C -0.131 4.131 22 C -0.173 4.173 23 Cl -0.001 7.001 24 S 0.270 5.730 25 C 0.151 3.849 26 H 0.249 0.751 27 H 0.051 0.949 28 H -0.007 1.007 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.405 0.595 36 H 0.169 0.831 37 H 0.179 0.821 38 H 0.008 0.992 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.384 -15.019 -2.114 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.123 4.123 14 H 0.096 0.904 15 C 0.013 3.987 16 N -0.366 5.366 17 C 0.377 3.623 18 O -0.446 6.446 19 C -0.403 4.403 20 C -0.077 4.077 21 C -0.163 4.163 22 C -0.319 4.319 23 Cl 0.028 6.972 24 S 0.537 5.463 25 C 0.025 3.975 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.187 0.813 37 H 0.197 0.803 38 H 0.026 0.974 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.860 -13.994 -1.649 20.479 hybrid contribution 0.465 0.207 -0.859 0.998 sum 15.325 -13.787 -2.508 20.766 Atomic orbital electron populations 1.70195 1.06773 1.25754 1.55482 1.25774 0.95935 1.01480 1.01380 0.85325 0.78390 0.79809 0.77325 1.21426 1.22137 1.19090 1.19547 0.93117 0.85956 1.40584 0.91118 1.44319 1.36030 1.02128 1.50723 1.20645 0.87631 0.97888 0.89214 1.21994 1.00981 0.95931 0.97970 1.21333 0.96401 0.96800 0.98905 1.21827 0.99291 0.93312 0.97853 0.90397 1.21392 0.84339 0.97134 0.95839 1.45950 1.24991 1.11075 1.54585 1.17075 0.83443 0.83677 0.78116 1.90811 1.61127 1.30660 1.61994 1.24675 1.02411 0.99857 1.13350 1.20839 0.93169 1.00063 0.93658 1.20272 0.97910 0.94981 1.03137 1.25202 0.98293 0.99354 1.09079 1.98399 1.32422 1.83780 1.82617 1.83441 1.09658 1.07639 1.45586 1.21127 0.97054 0.85879 0.93453 0.94222 0.93024 0.98940 0.92790 0.91224 0.89947 0.92510 0.90151 0.91814 0.75870 0.81334 0.80340 0.97424 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.90 11.19 21.65 0.24 -54.66 16 2 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 3 Si 0.96 43.85 29.59 68.60 2.03 45.88 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 8 H 0.07 3.59 7.89 -2.92 -0.02 3.57 16 9 N -0.61 -29.47 2.99 -698.26 -2.09 -31.56 16 10 C 0.17 8.11 5.31 86.36 0.46 8.57 16 11 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 12 C -0.10 -2.83 5.16 30.62 0.16 -2.67 16 13 C -0.10 -3.06 2.38 -10.57 -0.03 -3.09 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C 0.14 3.59 5.07 86.38 0.44 4.02 16 16 N -0.72 -18.07 5.33 -467.29 -2.49 -20.56 16 17 C 0.59 15.85 7.78 86.39 0.67 16.52 16 18 O -0.56 -18.55 16.84 -4.40 -0.07 -18.63 16 19 C -0.28 -6.12 6.45 24.05 0.16 -5.97 16 20 C -0.04 -0.79 10.01 21.71 0.22 -0.57 16 21 C -0.13 -1.95 10.08 21.11 0.21 -1.74 16 22 C -0.17 -2.90 6.82 66.86 0.46 -2.44 16 23 Cl 0.00 -0.01 29.27 -2.72 -0.08 -0.09 16 24 S 0.27 4.95 22.15 -56.49 -1.25 3.70 16 25 C 0.15 5.83 5.63 86.51 0.49 6.32 16 26 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 28 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.39 6.83 -92.71 -0.63 8.76 16 36 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.05 2.01 7.16 -2.39 -0.02 2.00 16 Total: -1.00 -65.53 349.54 1.37 -64.16 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.44 Total: 12.66 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.64 Total: -0.90 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.33 Total: -106.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.07 Total: -18.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.25 Total: 3.70 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -65.53 1.37 -64.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267090226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.722 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds