Wall clock time and date at job start Tue Mar 31 2020 15:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47149 * 70.26964 * 3 2 1 5 5 C 1.36873 * 120.00110 * 69.59220 * 4 3 2 6 6 H 1.08000 * 120.00195 * 189.92708 * 5 4 3 7 7 C 1.39048 * 119.99889 * 9.93506 * 5 4 3 8 8 N 1.31360 * 120.00282 * 318.83719 * 7 5 4 9 9 Si 1.86808 * 120.00031 * 138.83338 * 7 5 4 10 10 H 1.48500 * 109.46676 * 60.00430 * 9 7 5 11 11 H 1.48501 * 109.46882 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47080 * 300.00291 * 9 7 5 13 13 C 1.34775 * 120.00080 * 249.59614 * 4 3 2 14 14 O 1.21599 * 119.99919 * 185.76868 * 13 4 3 15 15 C 1.47736 * 120.00266 * 5.77032 * 13 4 3 16 16 C 1.39677 * 120.11845 * 31.60207 * 15 13 4 17 17 C 1.37952 * 119.95491 * 179.70243 * 16 15 13 18 18 C 1.38300 * 120.21027 * 0.59521 * 17 16 15 19 19 C 1.38830 * 120.25439 * 359.67935 * 18 17 16 20 20 O 1.35909 * 119.98127 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00158 * 0.02562 * 20 19 18 22 22 C 1.53001 * 109.47374 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.47142 * 59.99771 * 22 21 20 24 24 F 1.39907 * 109.47390 * 180.02562 * 22 21 20 25 25 F 1.39907 * 109.46860 * 299.99789 * 22 21 20 26 26 C 1.38467 * 120.03730 * 0.02562 * 19 18 17 27 27 H 1.09002 * 109.47181 * 190.26991 * 3 2 1 28 28 H 1.08998 * 109.47534 * 310.27201 * 3 2 1 29 29 H 0.96998 * 120.00804 * 180.02562 * 8 7 5 30 30 H 1.07993 * 120.02801 * 0.02562 * 16 15 13 31 31 H 1.08003 * 119.89321 * 180.29769 * 17 16 15 32 32 H 1.08003 * 119.87112 * 179.70088 * 18 17 16 33 33 H 1.09006 * 109.47306 * 300.00175 * 21 20 19 34 34 H 1.08999 * 109.47427 * 60.00174 * 21 20 19 35 35 H 1.07998 * 120.10694 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4654 -1.3001 5 6 2.9346 0.3159 -2.4122 6 1 3.1460 -0.0879 -3.3913 7 6 2.4982 1.6296 -2.2814 8 7 1.5437 1.9227 -1.4278 9 14 3.2693 2.9778 -3.3193 10 1 3.0640 2.6732 -4.7582 11 1 2.6321 4.2790 -2.9935 12 1 4.7243 3.0528 -3.0318 13 6 3.7054 -1.6635 -1.4012 14 8 4.2037 -2.0052 -2.4564 15 6 3.7673 -2.5619 -0.2299 16 6 2.7362 -2.5571 0.7123 17 6 2.7944 -3.4017 1.8015 18 6 3.8771 -4.2454 1.9707 19 6 4.9096 -4.2533 1.0426 20 8 5.9712 -5.0842 1.2146 21 6 5.9583 -5.9221 2.3720 22 6 7.2252 -6.7797 2.3951 23 9 8.3501 -5.9488 2.4333 24 9 7.2123 -7.6005 3.5280 25 9 7.2713 -7.5744 1.2445 26 6 4.8588 -3.4142 -0.0577 27 1 2.9709 1.0120 0.1832 28 1 2.9717 -0.6634 0.7841 29 1 1.2389 2.8391 -1.3368 30 1 1.8913 -1.8964 0.5856 31 1 1.9943 -3.4006 2.5269 32 1 3.9194 -4.9010 2.8280 33 1 5.9227 -5.3030 3.2685 34 1 5.0817 -6.5693 2.3425 35 1 5.6612 -3.4196 -0.7806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269291289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:06 Heat of formation + Delta-G solvation = -149.334270 kcal Electronic energy + Delta-G solvation = -27098.773616 eV Core-core repulsion = 22455.514774 eV Total energy + Delta-G solvation = -4643.258842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.14577 -48.68879 -48.63575 -41.64087 -40.56062 -38.19331 -37.74324 -36.05257 -34.12988 -32.35792 -31.85898 -30.29301 -29.09658 -27.25836 -25.12937 -23.85223 -23.42588 -21.37241 -20.04161 -19.86285 -19.67739 -18.90905 -18.78083 -18.00433 -17.79272 -17.12587 -16.88469 -16.58147 -16.37533 -15.99954 -15.54074 -15.46487 -15.25808 -15.06724 -14.98815 -14.90194 -14.79935 -14.78152 -14.45872 -14.21645 -14.12629 -13.58174 -13.39071 -13.15252 -13.01138 -12.91970 -12.62075 -12.46073 -12.34450 -12.11334 -12.04236 -11.88463 -10.96898 -10.60927 -10.19745 -9.96492 -9.30236 -8.68981 -5.91804 -0.07444 0.36452 1.21058 1.33476 1.45649 1.53996 1.84226 1.96841 2.09236 2.22961 2.35974 2.65597 2.70292 2.84028 2.95499 3.10915 3.34528 3.60824 3.76064 3.78876 4.00459 4.02037 4.12657 4.19454 4.32089 4.40537 4.55626 4.73298 4.93570 5.15652 5.32837 5.36655 5.44951 5.54170 5.93115 6.20233 6.29334 6.98621 7.10497 7.22321 7.83493 8.33573 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.002820 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.209104 B = 9927.041560 C =10694.940849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.265 3.735 3 C 0.200 3.800 4 N -0.432 5.432 5 C -0.378 4.378 6 H 0.083 0.917 7 C 0.036 3.964 8 N -0.842 5.842 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.267 1.267 13 C 0.469 3.531 14 O -0.620 6.620 15 C -0.078 4.078 16 C -0.151 4.151 17 C -0.066 4.066 18 C -0.176 4.176 19 C 0.126 3.874 20 O -0.319 6.319 21 C 0.007 3.993 22 C 0.464 3.536 23 F -0.186 7.186 24 F -0.168 7.168 25 F -0.187 7.187 26 C -0.117 4.117 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.285 0.715 30 H 0.124 0.876 31 H 0.170 0.830 32 H 0.179 0.821 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 -12.692 16.842 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.052 4.052 3 C 0.074 3.926 4 N -0.149 5.149 5 C -0.504 4.504 6 H 0.101 0.899 7 C -0.173 4.173 8 N -0.476 5.476 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.192 1.192 13 C 0.261 3.739 14 O -0.508 6.508 15 C -0.082 4.082 16 C -0.171 4.171 17 C -0.084 4.084 18 C -0.195 4.195 19 C 0.082 3.918 20 O -0.234 6.234 21 C -0.069 4.069 22 C 0.410 3.590 23 F -0.167 7.167 24 F -0.149 7.149 25 F -0.169 7.169 26 C -0.137 4.137 27 H 0.126 0.874 28 H 0.163 0.837 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.205 -12.679 16.271 21.541 hybrid contribution 0.741 0.808 -1.201 1.626 sum 6.946 -11.871 15.071 20.403 Atomic orbital electron populations 1.80857 1.14215 1.12547 1.10078 1.28851 0.95111 0.89964 0.91244 1.19693 0.81424 1.04025 0.87462 1.43703 1.47870 1.15899 1.07464 1.19337 1.49563 0.93524 0.87951 0.89912 1.25813 0.93338 0.99375 0.98777 1.69939 1.18298 1.21843 1.37490 0.85393 0.79674 0.77037 0.78707 1.20362 1.19578 1.19159 1.18462 0.84240 0.82366 0.88834 1.90600 1.52638 1.75379 1.32172 1.19625 0.96341 0.97492 0.94700 1.21688 0.98326 1.01602 0.95435 1.21253 0.98216 0.92487 0.96458 1.21729 0.93810 1.03275 1.00672 1.18571 0.87423 0.90965 0.94861 1.86006 1.41914 1.51366 1.44092 1.24172 0.95748 0.95308 0.91631 1.20257 0.85923 0.79262 0.73576 1.93221 1.55770 1.71687 1.96047 1.93237 1.96678 1.73665 1.51312 1.93222 1.96838 1.75827 1.51000 1.20251 0.98881 0.96741 0.97835 0.87379 0.83715 0.90355 0.85824 0.81285 0.80375 0.83894 0.84257 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.90 18.49 20.01 0.37 -22.53 16 2 C 0.27 11.36 10.52 89.44 0.94 12.30 16 3 C 0.20 7.73 4.77 84.57 0.40 8.13 16 4 N -0.43 -20.61 2.69 -648.83 -1.75 -22.36 16 5 C -0.38 -20.19 9.10 84.10 0.76 -19.42 16 6 H 0.08 4.89 7.46 -2.91 -0.02 4.87 16 7 C 0.04 1.73 4.83 84.96 0.41 2.14 16 8 N -0.84 -40.62 9.07 21.68 0.20 -40.42 16 9 Si 0.97 39.46 29.69 68.60 2.04 41.50 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 13 C 0.47 22.34 7.35 86.75 0.64 22.98 16 14 O -0.62 -34.80 16.38 -4.03 -0.07 -34.87 16 15 C -0.08 -2.83 5.36 -20.10 -0.11 -2.94 16 16 C -0.15 -4.36 7.36 22.55 0.17 -4.20 16 17 C -0.07 -1.26 10.03 22.22 0.22 -1.03 16 18 C -0.18 -2.83 9.03 22.43 0.20 -2.62 16 19 C 0.13 2.94 6.68 22.47 0.15 3.09 16 20 O -0.32 -6.68 10.02 -92.52 -0.93 -7.61 16 21 C 0.01 0.08 4.70 71.98 0.34 0.42 16 22 C 0.46 6.87 3.32 71.98 0.24 7.11 16 23 F -0.19 -3.52 17.26 44.97 0.78 -2.74 16 24 F -0.17 -2.16 17.32 44.97 0.78 -1.38 16 25 F -0.19 -3.64 17.26 44.97 0.78 -2.86 16 26 C -0.12 -3.81 9.54 22.64 0.22 -3.59 16 27 H 0.11 4.13 7.11 -2.39 -0.02 4.11 16 28 H 0.15 4.42 4.36 -2.39 -0.01 4.41 16 29 H 0.29 13.00 8.31 -92.71 -0.77 12.23 16 30 H 0.12 3.91 4.12 -2.91 -0.01 3.90 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.18 1.06 6.28 -2.91 -0.02 1.04 16 33 H 0.14 0.61 7.66 -2.38 -0.02 0.60 16 34 H 0.14 0.69 7.66 -2.39 -0.02 0.67 16 35 H 0.12 4.30 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -71.52 321.04 7.97 -63.55 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.19 Total: 7.34 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 4.58 Total: 22.37 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.18 Total: -85.31 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.99 Total: -42.47 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 2.33 Total: -6.99 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.04 Total: 41.50 kcal Total: -71.52 7.97 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269291289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.783 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds