Wall clock time and date at job start Tue Mar 31 2020 15:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47063 * 269.99839 * 3 2 1 5 5 H 1.48503 * 109.47495 * 29.99534 * 3 2 1 6 6 H 1.48495 * 109.47322 * 150.00048 * 3 2 1 7 7 C 1.37876 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00540 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47651 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47412 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47136 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54079 * 68.37354 * 12 11 10 14 14 O 1.42097 * 110.54225 * 291.62108 * 12 11 10 15 15 O 1.52202 * 104.44750 * 179.97438 * 12 11 10 16 16 C 1.35997 * 114.00153 * 74.99798 * 15 12 11 17 17 C 1.38645 * 120.00837 * 89.99956 * 16 15 12 18 18 C 1.38208 * 120.05015 * 180.02562 * 17 16 15 19 19 C 1.38206 * 120.14543 * 0.04859 * 18 17 16 20 20 C 1.38788 * 120.16588 * 0.28640 * 19 18 17 21 21 C 1.38820 * 119.85591 * 359.34145 * 20 19 18 22 22 O 1.36208 * 120.80865 * 180.54714 * 21 20 19 23 23 C 1.43181 * 116.70653 * 343.02139 * 22 21 20 24 24 C 1.53465 * 108.24008 * 46.13304 * 23 22 21 25 25 O 1.36114 * 119.36555 * 179.97438 * 20 19 18 26 26 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46974 * 60.00074 * 9 7 2 28 28 H 1.09008 * 109.46969 * 300.00297 * 9 7 2 29 29 H 1.08998 * 109.47040 * 59.99908 * 10 9 7 30 30 H 1.09001 * 109.46603 * 300.00030 * 10 9 7 31 31 H 1.08998 * 109.47199 * 59.99875 * 11 10 9 32 32 H 1.09002 * 109.46588 * 300.00073 * 11 10 9 33 33 H 1.07998 * 119.97740 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.92908 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.91280 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.70597 * 165.81231 * 23 22 21 37 37 H 1.09000 * 109.70875 * 286.44191 * 23 22 21 38 38 H 1.09006 * 109.71276 * 59.99931 * 24 23 22 39 39 H 1.09008 * 109.71024 * 180.58430 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 16 6.1563 -4.3468 0.0028 13 8 5.8611 -4.9804 -1.2343 14 8 5.8592 -4.9802 1.2396 15 8 7.6724 -4.2135 0.0034 16 6 8.1949 -3.8444 1.2036 17 6 8.5627 -4.8114 2.1266 18 6 9.0932 -4.4373 3.3467 19 6 9.2578 -3.0993 3.6510 20 6 8.8857 -2.1249 2.7354 21 6 8.3597 -2.4969 1.5058 22 8 7.9985 -1.5570 0.5884 23 6 7.8298 -0.2192 1.0700 24 6 9.0264 0.1225 1.9681 25 8 9.0545 -0.8119 3.0523 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 3.6586 -3.1502 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9142 -2.1230 0.8927 32 1 5.9155 -2.1223 -0.8873 33 1 8.4337 -5.8578 1.8923 34 1 9.3794 -5.1922 4.0640 35 1 9.6731 -2.8111 4.6055 36 1 7.7926 0.4724 0.2283 37 1 6.9065 -0.1493 1.6452 38 1 9.9501 0.0471 1.3943 39 1 8.9169 1.1349 2.3570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273597297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:19 Heat of formation + Delta-G solvation = -150.990484 kcal Electronic energy + Delta-G solvation = -26969.754074 eV Core-core repulsion = 22971.431354 eV Total energy + Delta-G solvation = -3998.322721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03176 -40.32135 -37.87930 -37.29338 -37.01640 -35.95817 -34.82897 -32.24855 -31.67357 -30.43667 -28.90846 -28.43854 -25.29493 -23.97841 -23.67333 -21.57545 -21.03023 -20.20204 -19.09239 -18.43536 -18.17615 -17.53962 -17.10215 -16.76312 -16.38464 -15.76622 -15.56910 -15.33599 -14.99611 -14.83351 -14.72256 -14.25442 -14.22745 -13.58308 -13.29867 -12.92515 -12.73012 -12.48102 -12.34413 -12.17421 -12.09207 -11.99860 -11.92629 -11.63375 -11.50779 -11.41403 -11.05894 -10.99119 -10.95431 -10.11658 -9.90891 -9.63464 -9.29510 -8.97486 -8.61799 -8.57246 -6.11064 -4.10143 0.06985 0.80593 0.87140 2.11980 2.52883 2.73129 3.14192 3.21961 3.27950 3.30388 3.72038 3.79617 4.05222 4.22665 4.36393 4.41507 4.45906 4.62155 4.66752 4.78502 4.89162 5.03181 5.05083 5.15191 5.18214 5.22516 5.46292 5.53637 5.75195 5.79248 5.92569 6.11928 6.17367 6.26065 6.39534 6.64728 6.89212 7.08921 7.23335 7.68074 8.45367 8.93734 9.49830 11.02376 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.004746 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.877248 B = 5898.088308 C = 7357.872787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.096 4.096 11 C -0.625 4.625 12 S 2.582 3.418 13 O -0.931 6.931 14 O -0.955 6.955 15 O -0.658 6.658 16 C 0.079 3.921 17 C -0.088 4.088 18 C -0.098 4.098 19 C -0.098 4.098 20 C 0.067 3.933 21 C 0.042 3.958 22 O -0.297 6.297 23 C 0.011 3.989 24 C 0.021 3.979 25 O -0.299 6.299 26 H 0.264 0.736 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.896 -2.538 6.820 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.040 4.040 10 C -0.135 4.135 11 C -0.755 4.755 12 S 2.681 3.319 13 O -0.929 6.929 14 O -0.953 6.953 15 O -0.616 6.616 16 C 0.036 3.964 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.117 4.117 20 C 0.021 3.979 21 C -0.006 4.006 22 O -0.212 6.212 23 C -0.064 4.064 24 C -0.055 4.055 25 O -0.214 6.214 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.857 -3.123 6.582 24.945 hybrid contribution 0.082 1.898 -0.344 1.931 sum 23.939 -1.225 6.238 24.769 Atomic orbital electron populations 1.69908 1.06261 1.26958 1.50701 1.25019 0.94744 0.99102 0.94516 0.86776 0.80218 0.83744 0.78490 1.20198 1.21272 1.19245 1.21136 0.89219 0.94805 1.51247 0.90677 1.19505 0.97309 0.90689 0.96546 1.21324 0.86294 1.03019 1.02871 1.30813 1.09662 1.23361 1.11640 1.05872 0.72971 0.78428 0.74654 1.93612 1.80980 1.73398 1.44936 1.93612 1.82211 1.73822 1.45690 1.85745 1.48429 1.87274 1.40189 1.17202 1.06565 0.89445 0.83203 1.21161 0.97473 0.99672 0.92511 1.20850 0.99259 0.95432 0.96116 1.20682 1.00371 0.90886 0.99789 1.18598 1.00652 0.85112 0.93518 1.18935 1.01947 0.88561 0.91107 1.86471 1.83949 1.17657 1.33085 1.23887 0.99074 0.81917 1.01549 1.23719 0.99003 0.93759 0.88979 1.86347 1.88238 1.12795 1.33975 0.92615 0.96438 0.96577 0.90824 0.90943 0.85757 0.84598 0.83230 0.83288 0.83595 0.85005 0.89141 0.90020 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C 0.00 -0.05 4.04 -27.89 -0.11 -0.16 16 10 C -0.10 -1.92 5.16 -26.73 -0.14 -2.05 16 11 C -0.63 -10.15 4.49 37.16 0.17 -9.98 16 12 S 2.58 42.95 5.17 -107.50 -0.56 42.39 16 13 O -0.93 -18.05 18.09 -67.04 -1.21 -19.26 16 14 O -0.95 -16.95 16.26 -67.03 -1.09 -18.04 16 15 O -0.66 -9.93 9.81 -54.32 -0.53 -10.46 16 16 C 0.08 1.07 4.81 -39.12 -0.19 0.89 16 17 C -0.09 -0.99 9.04 -39.44 -0.36 -1.35 16 18 C -0.10 -0.84 10.04 -39.60 -0.40 -1.24 16 19 C -0.10 -0.88 9.96 -39.39 -0.39 -1.27 16 20 C 0.07 0.74 6.49 -39.16 -0.25 0.49 16 21 C 0.04 0.54 5.64 -39.05 -0.22 0.32 16 22 O -0.30 -3.66 7.47 -45.23 -0.34 -4.00 16 23 C 0.01 0.10 6.98 37.40 0.26 0.36 16 24 C 0.02 0.15 7.26 37.40 0.27 0.43 16 25 O -0.30 -3.04 10.41 -32.93 -0.34 -3.38 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.02 0.36 7.57 -51.92 -0.39 -0.03 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.12 1.85 5.63 -51.92 -0.29 1.56 16 32 H 0.14 1.97 8.08 -51.92 -0.42 1.55 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.91 7.99 -51.93 -0.42 0.49 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -36.23 336.11 -9.56 -45.78 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.86 Total: -0.77 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -1.79 Total: -26.94 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -3.52 Total: -55.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 42.95 SS G_CDS: -0.56 Total: 42.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.23 -9.56 -45.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273597297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.210 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds