Wall clock time and date at job start Tue Mar 31 2020 15:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47063 * 269.99839 * 3 2 1 5 5 H 1.48503 * 109.47495 * 29.99534 * 3 2 1 6 6 H 1.48495 * 109.47322 * 150.00048 * 3 2 1 7 7 C 1.37876 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00540 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47651 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47412 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47136 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54079 * 68.37354 * 12 11 10 14 14 O 1.42097 * 110.54225 * 291.62108 * 12 11 10 15 15 O 1.52202 * 104.44750 * 179.97438 * 12 11 10 16 16 C 1.35997 * 114.00153 * 74.99798 * 15 12 11 17 17 C 1.38645 * 120.00837 * 89.99956 * 16 15 12 18 18 C 1.38208 * 120.05015 * 180.02562 * 17 16 15 19 19 C 1.38206 * 120.14543 * 0.04859 * 18 17 16 20 20 C 1.38788 * 120.16588 * 0.28640 * 19 18 17 21 21 C 1.38820 * 119.85591 * 359.34145 * 20 19 18 22 22 O 1.36208 * 120.80865 * 180.54714 * 21 20 19 23 23 C 1.43181 * 116.70653 * 343.02139 * 22 21 20 24 24 C 1.53465 * 108.24008 * 46.13304 * 23 22 21 25 25 O 1.36114 * 119.36555 * 179.97438 * 20 19 18 26 26 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46974 * 60.00074 * 9 7 2 28 28 H 1.09008 * 109.46969 * 300.00297 * 9 7 2 29 29 H 1.08998 * 109.47040 * 59.99908 * 10 9 7 30 30 H 1.09001 * 109.46603 * 300.00030 * 10 9 7 31 31 H 1.08998 * 109.47199 * 59.99875 * 11 10 9 32 32 H 1.09002 * 109.46588 * 300.00073 * 11 10 9 33 33 H 1.07998 * 119.97740 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.92908 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.91280 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.70597 * 165.81231 * 23 22 21 37 37 H 1.09000 * 109.70875 * 286.44191 * 23 22 21 38 38 H 1.09006 * 109.71276 * 59.99931 * 24 23 22 39 39 H 1.09008 * 109.71024 * 180.58430 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 16 6.1563 -4.3468 0.0028 13 8 5.8611 -4.9804 -1.2343 14 8 5.8592 -4.9802 1.2396 15 8 7.6724 -4.2135 0.0034 16 6 8.1949 -3.8444 1.2036 17 6 8.5627 -4.8114 2.1266 18 6 9.0932 -4.4373 3.3467 19 6 9.2578 -3.0993 3.6510 20 6 8.8857 -2.1249 2.7354 21 6 8.3597 -2.4969 1.5058 22 8 7.9985 -1.5570 0.5884 23 6 7.8298 -0.2192 1.0700 24 6 9.0264 0.1225 1.9681 25 8 9.0545 -0.8119 3.0523 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 3.6586 -3.1502 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9142 -2.1230 0.8927 32 1 5.9155 -2.1223 -0.8873 33 1 8.4337 -5.8578 1.8923 34 1 9.3794 -5.1922 4.0640 35 1 9.6731 -2.8111 4.6055 36 1 7.7926 0.4724 0.2283 37 1 6.9065 -0.1493 1.6452 38 1 9.9501 0.0471 1.3943 39 1 8.9169 1.1349 2.3570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273597297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:18 Heat of formation + Delta-G solvation = -176.941185 kcal Electronic energy + Delta-G solvation = -26970.879381 eV Core-core repulsion = 22971.431354 eV Total energy + Delta-G solvation = -3999.448027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86113 -41.26775 -38.65802 -38.42624 -38.02932 -37.33731 -36.56772 -34.29424 -32.34487 -31.24464 -30.27078 -29.61333 -26.02249 -25.52803 -24.81359 -22.55066 -22.25873 -21.51760 -20.03016 -19.44575 -19.21450 -18.90628 -18.59674 -17.83823 -17.58004 -16.67304 -16.49604 -16.35241 -16.27897 -15.78011 -15.65565 -15.62055 -15.45905 -14.89011 -14.35593 -14.24771 -14.04984 -13.79710 -13.70177 -13.44772 -13.39301 -13.31172 -13.16293 -12.84743 -12.74771 -12.61696 -12.26389 -12.05541 -11.87758 -11.73566 -11.68163 -11.44353 -11.29424 -10.78714 -9.80706 -9.33932 -8.30568 -6.36980 -1.11719 -0.07173 0.06263 0.97488 1.34536 1.38084 1.49216 1.79970 2.07164 2.35493 2.38357 2.44818 2.82515 3.04300 3.11645 3.44301 3.58723 3.67772 3.69095 3.88257 3.94293 4.10341 4.13607 4.25463 4.26129 4.48503 4.55142 4.56678 4.66958 4.73421 4.84295 4.90326 5.02501 5.20286 5.27360 5.41090 5.45033 5.59750 5.67009 6.15374 6.23866 6.70630 7.27530 8.86436 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.004746 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.877248 B = 5898.088308 C = 7357.872787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.234 1.234 7 C -0.544 4.544 8 H 0.030 0.970 9 C 0.000 4.000 10 C -0.100 4.100 11 C -0.616 4.616 12 S 2.599 3.401 13 O -0.967 6.967 14 O -0.971 6.971 15 O -0.654 6.654 16 C 0.036 3.964 17 C -0.102 4.102 18 C -0.087 4.087 19 C -0.089 4.089 20 C 0.055 3.945 21 C 0.029 3.971 22 O -0.315 6.315 23 C -0.002 4.002 24 C 0.019 3.981 25 O -0.307 6.307 26 H 0.267 0.733 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.085 -0.721 8.296 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.157 1.157 7 C -0.582 4.582 8 H 0.048 0.952 9 C -0.039 4.039 10 C -0.139 4.139 11 C -0.745 4.745 12 S 2.698 3.302 13 O -0.965 6.965 14 O -0.970 6.970 15 O -0.613 6.613 16 C -0.007 4.007 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.108 4.108 20 C 0.010 3.990 21 C -0.019 4.019 22 O -0.230 6.230 23 C -0.076 4.076 24 C -0.055 4.055 25 O -0.221 6.221 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.206 0.794 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 27.053 -1.328 8.051 28.257 hybrid contribution -0.882 1.295 -0.715 1.722 sum 26.172 -0.033 7.336 27.180 Atomic orbital electron populations 1.70085 1.08563 1.28342 1.52233 1.26114 0.95697 1.03915 0.93801 0.85605 0.79866 0.77493 0.79397 1.19006 1.21105 1.15735 1.21514 0.92146 0.93372 1.51173 0.95202 1.19457 0.93785 0.92957 0.97651 1.21205 0.89099 1.01106 1.02457 1.30689 1.06579 1.23759 1.13498 1.05317 0.73173 0.78153 0.73541 1.93561 1.82184 1.74426 1.46363 1.93570 1.82892 1.74375 1.46131 1.85711 1.46903 1.87369 1.41351 1.17723 1.08863 0.90721 0.83349 1.21525 0.97637 0.99855 0.93216 1.21329 0.97391 0.96346 0.95451 1.21174 0.98680 0.90628 1.00354 1.18894 1.00744 0.86079 0.93311 1.19084 1.02575 0.88359 0.91897 1.86429 1.84029 1.18788 1.33712 1.24197 0.99487 0.81054 1.02874 1.23980 0.98641 0.94429 0.88464 1.86335 1.88114 1.12585 1.35104 0.92413 0.94987 0.95062 0.91538 0.91500 0.84110 0.82641 0.82544 0.79377 0.80565 0.82677 0.90083 0.88985 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.00 0.08 5.47 84.65 0.46 0.55 16 3 Si 0.95 42.27 27.47 68.60 1.88 44.16 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C 0.00 0.00 4.04 29.85 0.12 0.12 16 10 C -0.10 -3.99 5.16 30.59 0.16 -3.83 16 11 C -0.62 -19.43 4.49 71.98 0.32 -19.10 16 12 S 2.60 86.87 5.17 -56.49 -0.29 86.58 16 13 O -0.97 -38.31 18.09 -118.57 -2.15 -40.46 16 14 O -0.97 -34.69 16.26 -118.57 -1.93 -36.62 16 15 O -0.65 -19.66 9.81 -60.45 -0.59 -20.25 16 16 C 0.04 0.95 4.81 22.57 0.11 1.06 16 17 C -0.10 -2.14 9.04 22.36 0.20 -1.94 16 18 C -0.09 -1.21 10.04 22.25 0.22 -0.99 16 19 C -0.09 -1.30 9.96 22.39 0.22 -1.08 16 20 C 0.06 1.10 6.49 22.54 0.15 1.25 16 21 C 0.03 0.69 5.64 22.61 0.13 0.82 16 22 O -0.31 -7.19 7.47 -72.18 -0.54 -7.73 16 23 C 0.00 -0.03 6.98 72.14 0.50 0.47 16 24 C 0.02 0.23 7.26 72.14 0.52 0.75 16 25 O -0.31 -5.33 10.41 -82.58 -0.86 -6.19 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 28 H 0.03 1.33 7.57 -2.38 -0.02 1.31 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.14 3.99 5.63 -2.39 -0.01 3.98 16 32 H 0.16 4.26 8.08 -2.39 -0.02 4.24 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16 38 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.16 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -81.31 336.11 0.21 -81.10 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.02 Total: 12.16 kcal Atomic # 6 Polarization: -56.56 SS G_CDS: 3.37 Total: -53.19 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -105.19 SS G_CDS: -6.07 Total: -111.25 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 86.87 SS G_CDS: -0.29 Total: 86.58 kcal Total: -81.31 0.21 -81.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273597297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.840 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds