Wall clock time and date at job start Tue Mar 31 2020 15:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47112 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.46972 * 30.00317 * 3 2 1 6 6 H 1.48496 * 109.47118 * 150.00075 * 3 2 1 7 7 C 1.38812 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99823 * 163.07871 * 7 2 1 9 9 N 1.36937 * 119.99807 * 343.07715 * 7 2 1 10 10 C 1.46923 * 120.63494 * 331.83818 * 9 7 2 11 11 C 1.53192 * 108.77319 * 233.58521 * 10 9 7 12 12 C 1.53032 * 109.31295 * 305.36254 * 11 10 9 13 13 C 1.53035 * 109.54133 * 61.36463 * 12 11 10 14 14 H 1.09003 * 109.50120 * 58.62113 * 13 12 11 15 15 C 1.53004 * 109.49932 * 178.68629 * 13 12 11 16 16 N 1.46506 * 109.47031 * 185.00058 * 15 13 12 17 17 C 1.34773 * 119.99768 * 179.97438 * 16 15 13 18 18 O 1.21642 * 120.00111 * 359.97438 * 17 16 15 19 19 C 1.47187 * 119.99828 * 180.02562 * 17 16 15 20 20 C 1.35969 * 123.45479 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.84439 * 179.97438 * 20 19 17 22 22 C 1.75507 * 92.45499 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 124.71953 * 180.26877 * 22 21 20 24 24 C 1.32890 * 110.56311 * 359.97438 * 22 21 20 25 25 C 1.46932 * 120.62673 * 151.80759 * 9 7 2 26 26 H 0.96995 * 119.99921 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.59118 * 113.79691 * 10 9 7 28 28 H 1.09003 * 109.58315 * 353.36447 * 10 9 7 29 29 H 1.09001 * 109.49980 * 185.40560 * 11 10 9 30 30 H 1.09007 * 109.52793 * 65.32807 * 11 10 9 31 31 H 1.09005 * 109.46049 * 301.34034 * 12 11 10 32 32 H 1.09010 * 109.45244 * 181.37848 * 12 11 10 33 33 H 1.08992 * 109.47036 * 65.00098 * 15 13 12 34 34 H 1.08998 * 109.46878 * 304.99442 * 15 13 12 35 35 H 0.96998 * 120.00173 * 0.02562 * 16 15 13 36 36 H 1.08002 * 124.57991 * 359.97379 * 20 19 17 37 37 H 1.07996 * 123.47748 * 179.97438 * 24 22 21 38 38 H 1.09000 * 109.58593 * 6.63002 * 25 9 7 39 39 H 1.08995 * 109.58672 * 246.19977 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3441 10 6 0.2261 -2.3411 1.2659 11 6 0.4976 -3.3213 2.4114 12 6 0.8120 -4.7023 1.8320 13 6 2.0672 -4.6182 0.9607 14 1 2.9025 -4.2556 1.5599 15 6 2.3995 -6.0058 0.4083 16 7 3.6656 -5.9486 -0.3267 17 6 4.1603 -7.0613 -0.9042 18 8 3.5560 -8.1131 -0.8148 19 6 5.4326 -7.0039 -1.6421 20 6 6.1659 -5.8678 -1.7845 21 16 7.5760 -6.1662 -2.6944 22 6 7.1789 -7.8641 -2.8937 23 17 8.1539 -9.0129 -3.7559 24 6 6.0312 -8.1494 -2.2875 25 6 1.8137 -3.6527 -0.2014 26 1 -0.4850 0.8400 0.0004 27 1 -0.6770 -2.6410 0.7346 28 1 0.0994 -1.3357 1.6676 29 1 -0.3829 -3.3867 3.0506 30 1 1.3472 -2.9707 2.9974 31 1 -0.0284 -5.0420 1.2264 32 1 0.9815 -5.4075 2.6458 33 1 1.6041 -6.3297 -0.2628 34 1 2.4897 -6.7130 1.2328 35 1 4.1481 -5.1101 -0.3970 36 1 5.8920 -4.9062 -1.3762 37 1 5.5907 -9.1354 -2.2796 38 1 2.7343 -3.5127 -0.7678 39 1 1.0399 -4.0596 -0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276523511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:44 Heat of formation + Delta-G solvation = -0.306163 kcal Electronic energy + Delta-G solvation = -22856.693641 eV Core-core repulsion = 19337.906999 eV Total energy + Delta-G solvation = -3518.786642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.01843 -38.04649 -37.47505 -36.54754 -34.89676 -33.08049 -30.87077 -30.48294 -29.53116 -26.06499 -25.34239 -24.60513 -22.24330 -21.65876 -20.92768 -19.66634 -19.04364 -18.55128 -17.25940 -16.69643 -15.67378 -15.41318 -15.17552 -14.84040 -14.41751 -13.97825 -13.90882 -13.75198 -13.56866 -13.47303 -12.99585 -12.82127 -12.38861 -12.32006 -12.21576 -11.92516 -11.83883 -11.34029 -11.12195 -11.06054 -10.74923 -10.55316 -10.29437 -10.22741 -10.07217 -9.94240 -9.61961 -9.47079 -9.24538 -9.07186 -8.76586 -8.51592 -6.72242 -5.84265 -3.27568 0.31566 0.67910 1.39240 1.57330 1.80799 3.20164 3.24127 3.32380 3.39969 3.41175 4.42889 4.49406 4.77827 4.91410 5.05982 5.24964 5.29368 5.38667 5.40342 5.47036 5.57269 5.75296 5.78848 5.90762 5.96144 6.18557 6.27562 6.32864 6.42647 6.54161 6.65747 6.72173 6.81527 6.91133 7.35528 7.48830 7.62726 7.72741 8.17014 8.39166 9.15310 9.78836 10.35854 11.24003 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002781 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.265420 B =10064.641380 C =11641.119202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.715 5.715 17 C 0.576 3.424 18 O -0.539 6.539 19 C -0.144 4.144 20 C -0.205 4.205 21 S 0.241 5.759 22 C -0.177 4.177 23 Cl -0.012 7.012 24 C -0.067 4.067 25 C 0.154 3.846 26 H 0.254 0.746 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.048 0.952 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -13.786 -2.757 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.004 3.996 16 N -0.367 5.367 17 C 0.360 3.640 18 O -0.418 6.418 19 C -0.162 4.162 20 C -0.344 4.344 21 S 0.505 5.495 22 C -0.319 4.319 23 Cl 0.016 6.984 24 C -0.098 4.098 25 C 0.027 3.973 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.199 0.801 37 H 0.180 0.820 38 H 0.067 0.933 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.594 -13.571 -3.255 20.193 hybrid contribution -0.552 0.375 0.368 0.762 sum 14.043 -13.195 -2.887 19.485 Atomic orbital electron populations 1.70034 1.05295 1.25571 1.53564 1.25049 0.95268 0.98428 1.00781 0.86326 0.79165 0.83719 0.77721 1.21375 1.21527 1.20495 1.19119 0.92428 0.84813 1.42146 0.91843 1.44032 1.35941 1.01303 1.50087 1.20799 0.88548 0.98287 0.88041 1.22171 1.00131 0.95957 0.99830 1.21339 0.96684 0.97782 0.97967 1.21969 0.98948 0.93527 0.99445 0.90850 1.21516 0.84404 0.98179 0.95491 1.45916 1.24922 1.11369 1.54444 1.17450 0.83808 0.83989 0.78714 1.90795 1.60504 1.29668 1.60816 1.20079 0.98183 0.92612 1.05298 1.25893 1.00467 1.03318 1.04696 1.83232 1.19474 0.98952 1.47842 1.25106 1.00217 0.97029 1.09593 1.98376 1.68649 1.56838 1.74532 1.21144 0.92793 1.00317 0.95525 1.20897 0.97437 0.86895 0.92060 0.93572 0.96406 0.89575 0.93142 0.92760 0.92408 0.93379 0.91288 0.91696 0.76321 0.80146 0.81981 0.93306 0.96276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.20 55.49 0.62 -24.94 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 8 H 0.06 1.61 7.88 -52.49 -0.41 1.19 16 9 N -0.59 -14.09 2.99 -172.32 -0.52 -14.61 16 10 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.75 16 12 C -0.10 -1.58 5.17 -26.70 -0.14 -1.72 16 13 C -0.12 -1.85 2.37 -90.50 -0.21 -2.07 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 16 N -0.72 -9.22 5.30 -61.46 -0.33 -9.55 16 17 C 0.58 8.04 7.79 -12.63 -0.10 7.94 16 18 O -0.54 -9.30 16.80 5.24 0.09 -9.21 16 19 C -0.14 -1.64 5.98 -104.63 -0.63 -2.27 16 20 C -0.21 -1.86 10.38 29.92 0.31 -1.55 16 21 S 0.24 1.91 23.02 -107.50 -2.47 -0.57 16 22 C -0.18 -1.67 7.01 28.89 0.20 -1.47 16 23 Cl -0.01 -0.11 29.27 -51.86 -1.52 -1.63 16 24 C -0.07 -0.72 10.04 -38.98 -0.39 -1.11 16 25 C 0.15 2.98 5.60 -3.71 -0.02 2.96 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 4.50 6.20 -40.82 -0.25 4.25 16 36 H 0.18 1.31 7.01 -52.49 -0.37 0.94 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.05 0.89 7.14 -51.93 -0.37 0.52 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -30.44 348.72 -10.39 -40.83 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.08 Total: 1.71 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.41 Total: -3.23 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.22 Total: -49.10 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.47 Total: -0.57 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.44 -10.39 -40.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276523511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.526 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds