Wall clock time and date at job start Tue Mar 31 2020 15:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47112 * 269.99976 * 3 2 1 5 5 H 1.48496 * 109.46972 * 30.00317 * 3 2 1 6 6 H 1.48496 * 109.47118 * 150.00075 * 3 2 1 7 7 C 1.38812 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99823 * 163.07871 * 7 2 1 9 9 N 1.36937 * 119.99807 * 343.07715 * 7 2 1 10 10 C 1.46923 * 120.63494 * 331.83818 * 9 7 2 11 11 C 1.53192 * 108.77319 * 233.58521 * 10 9 7 12 12 C 1.53032 * 109.31295 * 305.36254 * 11 10 9 13 13 C 1.53035 * 109.54133 * 61.36463 * 12 11 10 14 14 H 1.09003 * 109.50120 * 58.62113 * 13 12 11 15 15 C 1.53004 * 109.49932 * 178.68629 * 13 12 11 16 16 N 1.46506 * 109.47031 * 185.00058 * 15 13 12 17 17 C 1.34773 * 119.99768 * 179.97438 * 16 15 13 18 18 O 1.21642 * 120.00111 * 359.97438 * 17 16 15 19 19 C 1.47187 * 119.99828 * 180.02562 * 17 16 15 20 20 C 1.35969 * 123.45479 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.84439 * 179.97438 * 20 19 17 22 22 C 1.75507 * 92.45499 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 124.71953 * 180.26877 * 22 21 20 24 24 C 1.32890 * 110.56311 * 359.97438 * 22 21 20 25 25 C 1.46932 * 120.62673 * 151.80759 * 9 7 2 26 26 H 0.96995 * 119.99921 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.59118 * 113.79691 * 10 9 7 28 28 H 1.09003 * 109.58315 * 353.36447 * 10 9 7 29 29 H 1.09001 * 109.49980 * 185.40560 * 11 10 9 30 30 H 1.09007 * 109.52793 * 65.32807 * 11 10 9 31 31 H 1.09005 * 109.46049 * 301.34034 * 12 11 10 32 32 H 1.09010 * 109.45244 * 181.37848 * 12 11 10 33 33 H 1.08992 * 109.47036 * 65.00098 * 15 13 12 34 34 H 1.08998 * 109.46878 * 304.99442 * 15 13 12 35 35 H 0.96998 * 120.00173 * 0.02562 * 16 15 13 36 36 H 1.08002 * 124.57991 * 359.97379 * 20 19 17 37 37 H 1.07996 * 123.47748 * 179.97438 * 24 22 21 38 38 H 1.09000 * 109.58593 * 6.63002 * 25 9 7 39 39 H 1.08995 * 109.58672 * 246.19977 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3441 10 6 0.2261 -2.3411 1.2659 11 6 0.4976 -3.3213 2.4114 12 6 0.8120 -4.7023 1.8320 13 6 2.0672 -4.6182 0.9607 14 1 2.9025 -4.2556 1.5599 15 6 2.3995 -6.0058 0.4083 16 7 3.6656 -5.9486 -0.3267 17 6 4.1603 -7.0613 -0.9042 18 8 3.5560 -8.1131 -0.8148 19 6 5.4326 -7.0039 -1.6421 20 6 6.1659 -5.8678 -1.7845 21 16 7.5760 -6.1662 -2.6944 22 6 7.1789 -7.8641 -2.8937 23 17 8.1539 -9.0129 -3.7559 24 6 6.0312 -8.1494 -2.2875 25 6 1.8137 -3.6527 -0.2014 26 1 -0.4850 0.8400 0.0004 27 1 -0.6770 -2.6410 0.7346 28 1 0.0994 -1.3357 1.6676 29 1 -0.3829 -3.3867 3.0506 30 1 1.3472 -2.9707 2.9974 31 1 -0.0284 -5.0420 1.2264 32 1 0.9815 -5.4075 2.6458 33 1 1.6041 -6.3297 -0.2628 34 1 2.4897 -6.7130 1.2328 35 1 4.1481 -5.1101 -0.3970 36 1 5.8920 -4.9062 -1.3762 37 1 5.5907 -9.1354 -2.2796 38 1 2.7343 -3.5127 -0.7678 39 1 1.0399 -4.0596 -0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276523511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:43 Heat of formation + Delta-G solvation = -18.074692 kcal Electronic energy + Delta-G solvation = -22857.464143 eV Core-core repulsion = 19337.906999 eV Total energy + Delta-G solvation = -3519.557144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07349 -39.43510 -38.34868 -37.34818 -36.28092 -34.69591 -32.30910 -32.17093 -30.50480 -27.33117 -27.08928 -25.62476 -23.82742 -22.89542 -22.16964 -20.93132 -20.20432 -19.39725 -18.61883 -18.10759 -16.87054 -16.72166 -16.53321 -16.02737 -15.75238 -15.47278 -15.04365 -14.76246 -14.65219 -14.61482 -14.48339 -14.01424 -13.74654 -13.72976 -13.58147 -12.99658 -12.86346 -12.66349 -12.61674 -12.48384 -12.26208 -11.97059 -11.83085 -11.80919 -11.56632 -11.36314 -11.10233 -10.98558 -10.51678 -10.17921 -9.95686 -9.50415 -8.65960 -7.85219 -5.31132 -0.44185 -0.01500 0.66320 0.71056 1.09014 1.48255 1.50421 1.59248 2.18732 2.24824 2.52659 3.30199 3.59563 3.80045 3.87150 4.00041 4.02446 4.08073 4.15234 4.42181 4.50965 4.58489 4.62731 4.71053 4.77525 4.89050 4.90821 4.97537 5.02321 5.12269 5.22841 5.34053 5.38270 5.47015 5.58649 5.68493 5.79834 6.40384 6.47925 7.13729 7.16519 7.87998 8.40399 9.21208 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002781 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.265420 B =10064.641380 C =11641.119202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.080 0.920 15 C 0.138 3.862 16 N -0.710 5.710 17 C 0.576 3.424 18 O -0.580 6.580 19 C -0.170 4.170 20 C -0.197 4.197 21 S 0.303 5.697 22 C -0.186 4.186 23 Cl -0.007 7.007 24 C -0.081 4.081 25 C 0.152 3.848 26 H 0.248 0.752 27 H -0.009 1.009 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.201 0.799 37 H 0.154 0.846 38 H 0.059 0.941 39 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.278 -13.966 -2.440 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.098 0.902 15 C 0.014 3.986 16 N -0.361 5.361 17 C 0.363 3.637 18 O -0.462 6.462 19 C -0.188 4.188 20 C -0.336 4.336 21 S 0.567 5.433 22 C -0.329 4.329 23 Cl 0.021 6.979 24 C -0.112 4.112 25 C 0.026 3.974 26 H 0.057 0.943 27 H 0.009 0.991 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.218 0.782 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 17.041 -13.762 -2.941 22.101 hybrid contribution -1.244 0.428 0.195 1.330 sum 15.797 -13.334 -2.746 20.854 Atomic orbital electron populations 1.70201 1.06850 1.25754 1.55576 1.25825 0.95962 1.01627 1.01446 0.85305 0.78207 0.79597 0.77504 1.21243 1.22390 1.19073 1.19545 0.92990 0.85790 1.40681 0.90893 1.44308 1.35862 1.02297 1.50734 1.20629 0.87707 0.97736 0.89264 1.21995 1.00966 0.95920 0.97997 1.21341 0.96554 0.96795 0.98896 1.21724 0.99178 0.93303 0.97824 0.90209 1.21323 0.84690 0.96993 0.95641 1.45826 1.24513 1.11687 1.54059 1.17780 0.84291 0.83392 0.78256 1.90769 1.61873 1.31073 1.62453 1.19844 0.98002 0.93811 1.07121 1.26205 1.00458 1.03356 1.03594 1.83093 1.17543 0.96801 1.45835 1.25261 1.00010 0.98359 1.09274 1.98379 1.68266 1.56918 1.74309 1.21105 0.93518 1.00125 0.96430 1.21034 0.97167 0.85757 0.93413 0.94268 0.99070 0.93071 0.91366 0.92706 0.92724 0.90112 0.92343 0.90668 0.75226 0.78207 0.82884 0.92279 0.97768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.77 11.20 21.65 0.24 -54.53 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 43.25 29.59 68.60 2.03 45.28 16 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.26 -13.55 9.58 84.03 0.81 -12.74 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 9 N -0.61 -29.02 2.99 -699.10 -2.09 -31.12 16 10 C 0.17 8.10 5.30 86.36 0.46 8.55 16 11 C -0.13 -4.57 6.08 30.67 0.19 -4.38 16 12 C -0.10 -2.88 5.17 30.62 0.16 -2.72 16 13 C -0.10 -2.93 2.37 -10.72 -0.03 -2.95 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 3.60 5.07 86.38 0.44 4.04 16 16 N -0.71 -17.07 5.30 -466.59 -2.47 -19.54 16 17 C 0.58 15.59 7.79 86.59 0.67 16.26 16 18 O -0.58 -20.00 16.80 -4.16 -0.07 -20.07 16 19 C -0.17 -3.67 5.98 -19.87 -0.12 -3.79 16 20 C -0.20 -3.06 10.38 67.29 0.70 -2.36 16 21 S 0.30 3.92 23.02 -56.49 -1.30 2.62 16 22 C -0.19 -3.23 7.01 66.64 0.47 -2.76 16 23 Cl -0.01 -0.11 29.27 -2.72 -0.08 -0.19 16 24 C -0.08 -1.70 10.04 22.68 0.23 -1.47 16 25 C 0.15 5.74 5.60 86.36 0.48 6.23 16 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.05 2.75 6.06 -2.39 -0.01 2.73 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.41 8.22 6.20 -92.71 -0.58 7.65 16 36 H 0.20 2.21 7.01 -2.91 -0.02 2.19 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.06 2.07 7.14 -2.39 -0.02 2.05 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -67.09 348.72 1.63 -65.46 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.50 Total: 12.68 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.87 Total: -0.58 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.32 Total: -105.18 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.07 Total: -20.07 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.30 Total: 2.62 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -67.09 1.63 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276523511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.384 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds