Wall clock time and date at job start Tue Mar 31 2020 15:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 11 11 C 1.53184 * 108.77817 * 126.41448 * 10 9 7 12 12 C 1.53042 * 109.31519 * 54.63388 * 11 10 9 13 13 C 1.53075 * 109.65345 * 298.69965 * 12 11 10 14 14 H 1.08996 * 109.39782 * 301.27682 * 13 12 11 15 15 C 1.53004 * 109.61936 * 181.16636 * 13 12 11 16 16 N 1.46503 * 109.47070 * 175.10456 * 15 13 12 17 17 C 1.34777 * 119.99929 * 180.02562 * 16 15 13 18 18 O 1.21636 * 120.00075 * 0.02562 * 17 16 15 19 19 C 1.47182 * 120.00023 * 180.02562 * 17 16 15 20 20 C 1.35966 * 123.45633 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.84834 * 179.97438 * 20 19 17 22 22 C 1.75500 * 92.45494 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 124.72037 * 179.97438 * 22 21 20 24 24 C 1.32897 * 110.56036 * 359.73296 * 22 21 20 25 25 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.58325 * 246.20224 * 10 9 7 28 28 H 1.08996 * 109.58499 * 6.48109 * 10 9 7 29 29 H 1.09003 * 109.49977 * 174.58765 * 11 10 9 30 30 H 1.09001 * 109.49855 * 294.68137 * 11 10 9 31 31 H 1.08990 * 109.45833 * 58.65380 * 12 11 10 32 32 H 1.08998 * 109.46145 * 178.63454 * 12 11 10 33 33 H 1.08995 * 109.47635 * 295.10914 * 15 13 12 34 34 H 1.09004 * 109.46987 * 55.11104 * 15 13 12 35 35 H 0.96995 * 120.00017 * 0.02562 * 16 15 13 36 36 H 1.08001 * 124.57958 * 359.97438 * 20 19 17 37 37 H 1.07997 * 123.47339 * 180.23044 * 24 22 21 38 38 H 1.09003 * 109.58836 * 353.37398 * 25 9 7 39 39 H 1.08998 * 109.58900 * 113.65916 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 1.8138 -3.6528 -0.1981 11 6 2.0674 -4.6173 0.9647 12 6 0.8120 -4.7009 1.8361 13 6 0.4941 -3.3198 2.4146 14 1 1.3428 -2.9692 3.0019 15 6 -0.7441 -3.4101 3.3089 16 7 -0.9769 -2.1148 3.9527 17 6 -2.0201 -1.9571 4.7915 18 8 -2.7679 -2.8902 5.0143 19 6 -2.2543 -0.6557 5.4379 20 6 -1.4644 0.4330 5.2391 21 16 -2.0278 1.7642 6.1422 22 6 -3.3629 0.8419 6.8107 23 17 -4.5403 1.4697 7.9213 24 6 -3.3503 -0.4025 6.3444 25 6 0.2263 -2.3400 1.2679 26 1 -0.4850 0.8400 -0.0004 27 1 1.0401 -4.0604 -0.8488 28 1 2.7331 -3.5130 -0.7667 29 1 2.3042 -5.6063 0.5721 30 1 2.9024 -4.2537 1.5636 31 1 -0.0281 -5.0409 1.2308 32 1 0.9815 -5.4051 2.6505 33 1 -1.6108 -3.6761 2.7038 34 1 -0.5862 -4.1720 4.0722 35 1 -0.3804 -1.3709 3.7754 36 1 -0.5971 0.4517 4.5959 37 1 -4.0818 -1.1485 6.6177 38 1 0.0994 -1.3343 1.6687 39 1 -0.6774 -2.6381 0.7363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276523518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:47 Heat of formation + Delta-G solvation = -0.878377 kcal Electronic energy + Delta-G solvation = -23272.041841 eV Core-core repulsion = 19753.230385 eV Total energy + Delta-G solvation = -3518.811455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.83088 -37.96489 -37.35745 -36.40320 -34.71179 -33.13237 -31.19415 -30.01465 -29.42403 -25.99400 -25.35071 -24.50450 -22.26748 -21.54114 -20.78559 -19.52928 -18.95595 -18.38904 -17.09759 -16.76575 -15.52219 -15.33620 -15.02112 -14.79821 -14.16320 -13.92307 -13.76599 -13.64602 -13.56872 -13.34053 -12.96653 -12.79374 -12.36151 -12.24407 -12.22548 -11.78287 -11.70199 -11.28481 -11.08067 -10.98247 -10.77623 -10.55062 -10.29958 -10.23865 -9.99609 -9.87438 -9.60923 -9.49239 -9.09046 -8.88119 -8.60118 -8.54950 -6.73662 -5.87121 -3.29779 0.48775 0.82847 1.55416 1.73517 1.94557 3.28349 3.36875 3.38284 3.38704 3.44991 4.40979 4.69067 4.96622 5.08122 5.13238 5.26803 5.44450 5.49498 5.52828 5.55052 5.63678 5.75779 5.87547 5.97519 6.06059 6.24196 6.26027 6.35947 6.45612 6.60501 6.66097 6.77095 6.80823 6.96702 7.23574 7.53349 7.70551 7.71269 8.35945 8.36560 9.12969 9.76226 10.34029 11.20747 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003597 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.124930 B = 7782.218080 C = 9658.429182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.129 4.129 14 H 0.069 0.931 15 C 0.132 3.868 16 N -0.711 5.711 17 C 0.576 3.424 18 O -0.544 6.544 19 C -0.144 4.144 20 C -0.200 4.200 21 S 0.238 5.762 22 C -0.178 4.178 23 Cl -0.015 7.015 24 C -0.066 4.066 25 C 0.179 3.821 26 H 0.254 0.746 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.404 0.596 36 H 0.182 0.818 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 0.585 13.216 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.088 0.912 15 C 0.008 3.992 16 N -0.362 5.362 17 C 0.361 3.639 18 O -0.423 6.423 19 C -0.162 4.162 20 C -0.339 4.339 21 S 0.502 5.498 22 C -0.321 4.321 23 Cl 0.013 6.987 24 C -0.097 4.097 25 C 0.053 3.947 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.199 0.801 37 H 0.180 0.820 38 H 0.104 0.896 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.716 1.610 13.608 14.197 hybrid contribution 0.134 -0.169 -0.336 0.400 sum -3.583 1.440 13.271 13.822 Atomic orbital electron populations 1.70044 1.05114 1.25457 1.53990 1.25028 0.95251 0.98274 1.01032 0.86381 0.79207 0.83762 0.77978 1.21308 1.21529 1.20480 1.19190 0.92585 0.84778 1.41560 0.91727 1.44030 1.35935 1.01670 1.49841 1.20937 0.97562 0.86921 0.92940 1.21982 0.97351 0.98975 0.98876 1.21332 0.98352 0.95657 0.98481 1.22155 0.95837 0.98455 0.98472 0.91226 1.21428 0.98825 0.83708 0.95256 1.45882 1.29382 1.15309 1.45589 1.17422 0.80967 0.86530 0.78953 1.90773 1.46561 1.41621 1.63340 1.20075 0.97826 0.95151 1.03118 1.25917 1.05239 0.97675 1.05068 1.83194 1.18300 1.10921 1.37409 1.25081 1.01787 0.98821 1.06378 1.98367 1.54725 1.86227 1.59333 1.21129 0.98050 0.95158 0.95344 1.20787 0.88873 0.97484 0.87553 0.93630 0.96475 0.92894 0.93017 0.92432 0.92428 0.93350 0.91452 0.92069 0.76051 0.80087 0.82044 0.89603 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 11.20 55.49 0.62 -23.99 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.40 29.59 -169.99 -5.03 15.37 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.25 -6.55 9.58 -15.06 -0.14 -6.70 16 8 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.05 3.00 -172.33 -0.52 -14.57 16 10 C 0.14 2.88 6.52 -3.72 -0.02 2.85 16 11 C -0.13 -2.18 6.08 -26.61 -0.16 -2.35 16 12 C -0.10 -1.58 5.17 -26.67 -0.14 -1.72 16 13 C -0.13 -2.21 2.38 -90.48 -0.22 -2.43 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 2.11 5.08 -4.04 -0.02 2.09 16 16 N -0.71 -11.09 5.30 -61.46 -0.33 -11.42 16 17 C 0.58 9.38 7.79 -12.63 -0.10 9.28 16 18 O -0.54 -10.37 16.80 5.25 0.09 -10.28 16 19 C -0.14 -1.98 5.98 -104.63 -0.63 -2.61 16 20 C -0.20 -2.37 10.38 29.92 0.31 -2.06 16 21 S 0.24 2.41 23.02 -107.50 -2.47 -0.07 16 22 C -0.18 -2.00 7.01 28.89 0.20 -1.80 16 23 Cl -0.01 -0.15 29.27 -51.86 -1.52 -1.67 16 24 C -0.07 -0.83 10.04 -38.98 -0.39 -1.22 16 25 C 0.18 3.92 4.38 -3.71 -0.02 3.90 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.97 6.19 -40.82 -0.25 5.72 16 36 H 0.18 1.96 7.01 -52.49 -0.37 1.59 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.09 2.03 5.26 -51.93 -0.27 1.75 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -29.44 348.71 -10.39 -39.83 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.08 Total: 4.31 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.41 Total: -2.78 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.22 Total: -49.98 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.47 Total: -0.07 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.44 -10.39 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276523518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.955 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds