Wall clock time and date at job start Tue Mar 31 2020 15:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 11 11 C 1.53184 * 108.77817 * 126.41448 * 10 9 7 12 12 C 1.53042 * 109.31519 * 54.63388 * 11 10 9 13 13 C 1.53075 * 109.65345 * 298.69965 * 12 11 10 14 14 H 1.08996 * 109.39782 * 301.27682 * 13 12 11 15 15 C 1.53004 * 109.61936 * 181.16636 * 13 12 11 16 16 N 1.46503 * 109.47070 * 175.10456 * 15 13 12 17 17 C 1.34777 * 119.99929 * 180.02562 * 16 15 13 18 18 O 1.21636 * 120.00075 * 0.02562 * 17 16 15 19 19 C 1.47182 * 120.00023 * 180.02562 * 17 16 15 20 20 C 1.35966 * 123.45633 * 0.02562 * 19 17 16 21 21 S 1.70443 * 110.84834 * 179.97438 * 20 19 17 22 22 C 1.75500 * 92.45494 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 124.72037 * 179.97438 * 22 21 20 24 24 C 1.32897 * 110.56036 * 359.73296 * 22 21 20 25 25 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.58325 * 246.20224 * 10 9 7 28 28 H 1.08996 * 109.58499 * 6.48109 * 10 9 7 29 29 H 1.09003 * 109.49977 * 174.58765 * 11 10 9 30 30 H 1.09001 * 109.49855 * 294.68137 * 11 10 9 31 31 H 1.08990 * 109.45833 * 58.65380 * 12 11 10 32 32 H 1.08998 * 109.46145 * 178.63454 * 12 11 10 33 33 H 1.08995 * 109.47635 * 295.10914 * 15 13 12 34 34 H 1.09004 * 109.46987 * 55.11104 * 15 13 12 35 35 H 0.96995 * 120.00017 * 0.02562 * 16 15 13 36 36 H 1.08001 * 124.57958 * 359.97438 * 20 19 17 37 37 H 1.07997 * 123.47339 * 180.23044 * 24 22 21 38 38 H 1.09003 * 109.58836 * 353.37398 * 25 9 7 39 39 H 1.08998 * 109.58900 * 113.65916 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 1.8138 -3.6528 -0.1981 11 6 2.0674 -4.6173 0.9647 12 6 0.8120 -4.7009 1.8361 13 6 0.4941 -3.3198 2.4146 14 1 1.3428 -2.9692 3.0019 15 6 -0.7441 -3.4101 3.3089 16 7 -0.9769 -2.1148 3.9527 17 6 -2.0201 -1.9571 4.7915 18 8 -2.7679 -2.8902 5.0143 19 6 -2.2543 -0.6557 5.4379 20 6 -1.4644 0.4330 5.2391 21 16 -2.0278 1.7642 6.1422 22 6 -3.3629 0.8419 6.8107 23 17 -4.5403 1.4697 7.9213 24 6 -3.3503 -0.4025 6.3444 25 6 0.2263 -2.3400 1.2679 26 1 -0.4850 0.8400 -0.0004 27 1 1.0401 -4.0604 -0.8488 28 1 2.7331 -3.5130 -0.7667 29 1 2.3042 -5.6063 0.5721 30 1 2.9024 -4.2537 1.5636 31 1 -0.0281 -5.0409 1.2308 32 1 0.9815 -5.4051 2.6505 33 1 -1.6108 -3.6761 2.7038 34 1 -0.5862 -4.1720 4.0722 35 1 -0.3804 -1.3709 3.7754 36 1 -0.5971 0.4517 4.5959 37 1 -4.0818 -1.1485 6.6177 38 1 0.0994 -1.3343 1.6687 39 1 -0.6774 -2.6381 0.7363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276523518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:47 Heat of formation + Delta-G solvation = -17.458698 kcal Electronic energy + Delta-G solvation = -23272.760817 eV Core-core repulsion = 19753.230385 eV Total energy + Delta-G solvation = -3519.530432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07452 -39.41953 -38.36844 -37.36946 -36.17670 -34.82447 -32.69933 -31.63837 -30.55102 -27.40347 -27.08372 -25.66127 -23.87813 -22.82342 -22.13097 -20.90969 -20.21112 -19.41181 -18.68485 -18.13129 -16.94622 -16.77510 -16.37075 -16.03383 -15.73972 -15.37416 -15.09705 -14.75505 -14.67633 -14.61381 -14.51039 -14.02822 -13.78928 -13.75831 -13.61325 -12.90820 -12.87046 -12.70159 -12.63650 -12.52109 -12.21870 -11.97592 -11.84709 -11.78696 -11.54680 -11.35310 -11.09212 -10.99478 -10.53152 -10.17465 -9.98105 -9.53250 -8.64042 -7.84215 -5.30331 -0.47540 -0.04929 0.62925 0.69221 1.05892 1.47717 1.51187 1.59916 2.17409 2.25301 2.53429 3.28175 3.60835 3.76857 3.85493 4.00407 4.09002 4.12269 4.15708 4.36491 4.47714 4.55015 4.64513 4.67902 4.81503 4.88074 4.89303 4.95625 5.04787 5.16697 5.23243 5.34868 5.39600 5.47145 5.56749 5.68810 5.79229 6.41658 6.45207 7.10741 7.17881 7.88395 8.41267 9.21186 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003597 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.124930 B = 7782.218080 C = 9658.429182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.960 3.040 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.099 4.099 13 C -0.112 4.112 14 H 0.073 0.927 15 C 0.138 3.862 16 N -0.710 5.710 17 C 0.575 3.425 18 O -0.579 6.579 19 C -0.168 4.168 20 C -0.202 4.202 21 S 0.301 5.699 22 C -0.182 4.182 23 Cl -0.003 7.003 24 C -0.079 4.079 25 C 0.189 3.811 26 H 0.250 0.750 27 H 0.008 0.992 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.407 0.593 36 H 0.190 0.810 37 H 0.158 0.842 38 H 0.065 0.935 39 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 1.037 14.481 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.788 3.212 4 H -0.219 1.219 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.334 5.334 10 C 0.009 3.991 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.132 4.132 14 H 0.091 0.909 15 C 0.014 3.986 16 N -0.360 5.360 17 C 0.362 3.638 18 O -0.461 6.461 19 C -0.186 4.186 20 C -0.341 4.341 21 S 0.566 5.434 22 C -0.325 4.325 23 Cl 0.026 6.974 24 C -0.110 4.110 25 C 0.063 3.937 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.244 0.756 36 H 0.207 0.793 37 H 0.175 0.825 38 H 0.083 0.917 39 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -2.552 2.051 14.878 15.234 hybrid contribution -0.219 -0.260 -0.783 0.853 sum -2.771 1.791 14.095 14.476 Atomic orbital electron populations 1.70196 1.06426 1.25802 1.55211 1.25693 0.95907 1.01039 1.01157 0.85410 0.78331 0.80030 0.77459 1.21899 1.21214 1.19515 1.19478 0.92762 0.86007 1.41218 0.91927 1.44325 1.36104 1.02345 1.50657 1.21118 0.96988 0.86421 0.94525 1.21861 0.97545 0.99289 0.97297 1.21364 0.97945 0.95095 0.99336 1.21917 0.96314 0.98270 0.96704 0.90892 1.21328 0.97566 0.84434 0.95248 1.45878 1.29435 1.15318 1.45345 1.17781 0.80334 0.87152 0.78559 1.90740 1.47681 1.43003 1.64657 1.19893 0.99426 0.94587 1.04673 1.26131 1.05013 0.98080 1.04849 1.83009 1.16409 1.08703 1.35298 1.25220 1.02369 0.98758 1.06193 1.98373 1.54342 1.85904 1.58814 1.21086 0.98114 0.95850 0.95911 1.20578 0.87185 0.97585 0.88317 0.94056 0.97376 0.93068 0.89931 0.92358 0.92777 0.90096 0.92971 0.90438 0.75620 0.79329 0.82484 0.91694 0.99683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.76 11.20 21.65 0.24 -51.52 16 2 C -0.04 -2.21 4.92 84.86 0.42 -1.80 16 3 Si 0.96 41.91 29.59 68.60 2.03 43.94 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.26 -13.86 9.58 84.03 0.81 -13.06 16 8 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 9 N -0.61 -29.25 3.00 -699.11 -2.09 -31.34 16 10 C 0.13 5.38 6.52 86.36 0.56 5.95 16 11 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 12 C -0.10 -2.93 5.17 30.63 0.16 -2.77 16 13 C -0.11 -3.76 2.38 -10.70 -0.03 -3.79 16 14 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 4.39 5.08 86.38 0.44 4.83 16 16 N -0.71 -22.27 5.30 -466.59 -2.47 -24.75 16 17 C 0.58 18.98 7.79 86.59 0.67 19.65 16 18 O -0.58 -22.56 16.80 -4.15 -0.07 -22.63 16 19 C -0.17 -4.60 5.98 -19.87 -0.12 -4.72 16 20 C -0.20 -4.56 10.38 67.29 0.70 -3.86 16 21 S 0.30 5.47 23.02 -56.49 -1.30 4.17 16 22 C -0.18 -3.87 7.01 66.64 0.47 -3.40 16 23 Cl 0.00 -0.05 29.27 -2.72 -0.08 -0.13 16 24 C -0.08 -1.98 10.04 22.68 0.23 -1.75 16 25 C 0.19 8.43 4.38 86.36 0.38 8.81 16 26 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.41 12.12 6.19 -92.71 -0.57 11.54 16 36 H 0.19 3.89 7.01 -2.91 -0.02 3.87 16 37 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.06 3.15 5.26 -2.39 -0.01 3.13 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: -1.00 -63.89 348.71 1.63 -62.27 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.50 Total: 19.43 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.87 Total: 0.57 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.32 Total: -107.61 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.07 Total: -22.63 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.30 Total: 4.17 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -63.89 1.63 -62.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276523518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.807 kcal (2) G-P(sol) polarization free energy of solvation -63.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds