Wall clock time and date at job start Tue Mar 31 2020 15:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46909 * 299.99972 * 3 2 1 6 6 H 1.48499 * 109.46775 * 59.99559 * 3 2 1 7 7 C 1.40146 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00559 * 180.02562 * 7 2 1 9 9 C 1.41672 * 119.99804 * 0.02562 * 7 2 1 10 10 O 1.21804 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00003 * 179.97438 * 9 7 2 12 12 C 1.39461 * 120.00225 * 185.04697 * 11 9 7 13 13 C 1.39008 * 120.10120 * 33.59492 * 12 11 9 14 14 C 1.38030 * 120.03335 * 179.97438 * 13 12 11 15 15 C 1.38616 * 120.24575 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 119.89508 * 179.97438 * 15 14 13 17 17 C 1.38423 * 120.20621 * 359.72475 * 15 14 13 18 18 F 1.35106 * 120.01818 * 180.29885 * 17 15 14 19 19 C 1.38912 * 119.96370 * 0.57192 * 17 15 14 20 20 N 1.39764 * 120.12178 * 179.69944 * 19 17 15 21 21 C 1.47019 * 111.00415 * 296.26350 * 20 19 17 22 22 C 1.53097 * 109.29365 * 182.36933 * 21 20 19 23 23 O 1.43022 * 109.25762 * 303.22016 * 22 21 20 24 24 C 1.43009 * 113.77356 * 58.60164 * 23 22 21 25 25 C 1.47020 * 111.00040 * 59.90006 * 20 19 17 26 26 H 0.96997 * 119.99401 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00170 * 5.04498 * 11 9 7 28 28 H 1.08005 * 119.98185 * 359.97438 * 13 12 11 29 29 H 1.08008 * 119.87670 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.50590 * 302.33174 * 21 20 19 31 31 H 1.09004 * 109.50291 * 62.41012 * 21 20 19 32 32 H 1.08997 * 109.50798 * 63.11472 * 22 21 20 33 33 H 1.09004 * 109.50088 * 183.23519 * 22 21 20 34 34 H 1.09000 * 109.50604 * 181.41731 * 24 23 22 35 35 H 1.09000 * 109.54444 * 61.31412 * 24 23 22 36 36 H 1.08998 * 109.50663 * 297.54080 * 25 20 19 37 37 H 1.09002 * 109.50398 * 57.62818 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8815 2.3964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2138 0.0010 9 6 1.2986 -2.4406 0.0005 10 8 0.0806 -2.4406 -0.0004 11 7 1.9724 -3.6078 0.0005 12 6 1.2792 -4.8132 -0.1057 13 6 0.1174 -4.8847 -0.8657 14 6 -0.5673 -6.0786 -0.9704 15 6 -0.1009 -7.2103 -0.3199 16 17 -0.9696 -8.7070 -0.4572 17 6 1.0582 -7.1520 0.4345 18 9 1.5127 -8.2589 1.0619 19 6 1.7508 -5.9535 0.5507 20 7 2.9181 -5.8894 1.3167 21 6 2.6350 -6.1655 2.7327 22 6 3.9265 -6.0273 3.5431 23 8 4.9169 -6.9085 3.0062 24 6 5.2175 -6.6672 1.6291 25 6 3.9388 -6.8128 0.7999 26 1 -0.4849 0.8401 -0.0004 27 1 2.9396 -3.6095 0.0744 28 1 -0.2495 -4.0056 -1.3746 29 1 -1.4694 -6.1314 -1.5619 30 1 1.8959 -5.4543 3.1015 31 1 2.2475 -7.1792 2.8355 32 1 4.2846 -4.9995 3.4847 33 1 3.7327 -6.2872 4.5838 34 1 5.9579 -7.3900 1.2861 35 1 5.6134 -5.6582 1.5136 36 1 3.5730 -7.8370 0.8719 37 1 4.1509 -6.5744 -0.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282542275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:06 Heat of formation + Delta-G solvation = -91.160088 kcal Electronic energy + Delta-G solvation = -26305.009941 eV Core-core repulsion = 22216.070401 eV Total energy + Delta-G solvation = -4088.939540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.91794 -40.15303 -38.87322 -37.30554 -36.37846 -35.21472 -33.52109 -32.50199 -31.20289 -29.91494 -29.07597 -26.82505 -26.03422 -24.01835 -22.78596 -22.04086 -20.49962 -20.09011 -17.93707 -17.52936 -17.02558 -16.38722 -16.26390 -15.53820 -15.42802 -15.40790 -15.12471 -15.06644 -14.97798 -14.15223 -14.06667 -13.74796 -13.47586 -12.83331 -12.70044 -12.51638 -12.44326 -12.09011 -11.82921 -11.60430 -11.41216 -11.34607 -11.26302 -10.97428 -10.86436 -10.73601 -10.56934 -10.39085 -9.75001 -9.37011 -8.98813 -8.52090 -8.49601 -7.88569 -7.25635 -6.49971 -5.02637 1.32043 1.41208 2.29553 2.97422 3.07211 3.11439 3.63651 3.71881 3.85872 3.89292 4.14943 4.33965 4.60876 4.87890 4.97077 5.13589 5.15835 5.18792 5.26033 5.40206 5.52151 5.58005 5.60631 5.65430 5.80989 5.86046 5.88698 6.08194 6.17095 6.35441 6.56881 6.81945 6.96164 7.09784 7.13454 7.28060 7.71534 7.88469 8.01905 8.68924 9.12540 10.24388 10.43489 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.004673 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.413816 B = 5990.719207 C = 8018.420855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.540 3.460 10 O -0.566 6.566 11 N -0.678 5.678 12 C 0.260 3.740 13 C -0.126 4.126 14 C -0.062 4.062 15 C -0.114 4.114 16 Cl -0.075 7.075 17 C 0.102 3.898 18 F -0.132 7.132 19 C -0.008 4.008 20 N -0.478 5.478 21 C 0.018 3.982 22 C 0.067 3.933 23 O -0.387 6.387 24 C 0.067 3.933 25 C 0.010 3.990 26 H 0.274 0.726 27 H 0.401 0.599 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -10.992 0.896 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.350 3.650 10 O -0.450 6.450 11 N -0.318 5.318 12 C 0.155 3.845 13 C -0.148 4.148 14 C -0.081 4.081 15 C -0.144 4.144 16 Cl -0.046 7.046 17 C 0.079 3.921 18 F -0.111 7.111 19 C -0.108 4.108 20 N -0.199 5.199 21 C -0.109 4.109 22 C -0.010 4.010 23 O -0.305 6.305 24 C -0.010 4.010 25 C -0.117 4.117 26 H 0.085 0.915 27 H 0.236 0.764 28 H 0.176 0.824 29 H 0.156 0.844 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.041 -10.546 1.005 11.732 hybrid contribution 0.334 -0.188 0.068 0.389 sum 5.375 -10.734 1.073 12.053 Atomic orbital electron populations 1.70006 1.07312 1.28007 1.31799 1.25768 0.94664 1.00764 0.92366 0.86216 0.80591 0.80978 0.78522 1.18470 1.19852 1.19879 1.20059 0.94520 0.89799 1.52229 0.90957 1.17113 0.87625 0.81935 0.78338 1.90680 1.13469 1.85811 1.55017 1.44225 1.10303 1.03429 1.73867 1.17674 0.91830 0.85646 0.89345 1.21395 0.95764 0.98047 0.99574 1.20845 0.99595 0.90043 0.97646 1.20658 0.96528 0.89341 1.07862 1.98328 1.76051 1.32843 1.97385 1.17809 0.94176 0.83321 0.96796 1.91427 1.88283 1.51107 1.80254 1.18356 0.96399 0.91885 1.04116 1.59525 1.06886 1.51728 1.01808 1.22892 0.98971 1.01505 0.87537 1.22662 0.86924 0.94485 0.96956 1.87953 1.59140 1.58165 1.25273 1.22633 0.95366 1.01830 0.81180 1.22995 0.92931 0.95776 1.00029 0.91540 0.76396 0.82423 0.84412 0.89250 0.92955 0.91876 0.88404 0.88517 0.92028 0.92611 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.32 11.73 55.56 0.65 -19.67 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.13 16 3 Si 0.91 18.40 29.56 -169.99 -5.02 13.37 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.53 -13.57 9.31 -37.56 -0.35 -13.92 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.54 13.86 7.31 -14.95 -0.11 13.75 16 10 O -0.57 -16.37 12.56 5.10 0.06 -16.30 16 11 N -0.68 -14.16 5.15 -12.30 -0.06 -14.22 16 12 C 0.26 5.02 6.30 -83.53 -0.53 4.50 16 13 C -0.13 -2.41 8.65 -39.37 -0.34 -2.75 16 14 C -0.06 -1.01 9.82 -39.52 -0.39 -1.39 16 15 C -0.11 -1.85 6.33 -39.37 -0.25 -2.10 16 16 Cl -0.07 -1.08 28.60 -51.86 -1.48 -2.56 16 17 C 0.10 1.69 6.68 -39.26 -0.26 1.43 16 18 F -0.13 -2.14 12.98 2.25 0.03 -2.11 16 19 C -0.01 -0.14 4.76 -83.42 -0.40 -0.54 16 20 N -0.48 -7.29 4.16 -170.49 -0.71 -8.00 16 21 C 0.02 0.26 5.34 -3.71 -0.02 0.24 16 22 C 0.07 0.83 7.01 37.21 0.26 1.09 16 23 O -0.39 -5.15 10.82 -35.23 -0.38 -5.53 16 24 C 0.07 0.77 7.01 37.21 0.26 1.03 16 25 C 0.01 0.13 5.30 -3.71 -0.02 0.11 16 26 H 0.27 6.74 8.29 -40.82 -0.34 6.40 16 27 H 0.40 7.54 8.43 -40.82 -0.34 7.19 16 28 H 0.16 3.39 6.42 -52.48 -0.34 3.05 16 29 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 0.78 6.42 -51.93 -0.33 0.45 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.78 6.12 -51.93 -0.32 0.46 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -29.59 326.60 -8.07 -37.66 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.84 Total: 8.86 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.23 Total: 3.58 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.12 Total: -41.89 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.32 Total: -21.83 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.37 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.48 Total: -2.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.59 -8.07 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282542275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.504 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds