Wall clock time and date at job start Tue Mar 31 2020 15:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46909 * 299.99972 * 3 2 1 6 6 H 1.48499 * 109.46775 * 59.99559 * 3 2 1 7 7 C 1.40146 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00559 * 180.02562 * 7 2 1 9 9 C 1.41672 * 119.99804 * 0.02562 * 7 2 1 10 10 O 1.21804 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00003 * 179.97438 * 9 7 2 12 12 C 1.39461 * 120.00225 * 185.04697 * 11 9 7 13 13 C 1.39008 * 120.10120 * 33.59492 * 12 11 9 14 14 C 1.38030 * 120.03335 * 179.97438 * 13 12 11 15 15 C 1.38616 * 120.24575 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 119.89508 * 179.97438 * 15 14 13 17 17 C 1.38423 * 120.20621 * 359.72475 * 15 14 13 18 18 F 1.35106 * 120.01818 * 180.29885 * 17 15 14 19 19 C 1.38912 * 119.96370 * 0.57192 * 17 15 14 20 20 N 1.39764 * 120.12178 * 179.69944 * 19 17 15 21 21 C 1.47019 * 111.00415 * 296.26350 * 20 19 17 22 22 C 1.53097 * 109.29365 * 182.36933 * 21 20 19 23 23 O 1.43022 * 109.25762 * 303.22016 * 22 21 20 24 24 C 1.43009 * 113.77356 * 58.60164 * 23 22 21 25 25 C 1.47020 * 111.00040 * 59.90006 * 20 19 17 26 26 H 0.96997 * 119.99401 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00170 * 5.04498 * 11 9 7 28 28 H 1.08005 * 119.98185 * 359.97438 * 13 12 11 29 29 H 1.08008 * 119.87670 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.50590 * 302.33174 * 21 20 19 31 31 H 1.09004 * 109.50291 * 62.41012 * 21 20 19 32 32 H 1.08997 * 109.50798 * 63.11472 * 22 21 20 33 33 H 1.09004 * 109.50088 * 183.23519 * 22 21 20 34 34 H 1.09000 * 109.50604 * 181.41731 * 24 23 22 35 35 H 1.09000 * 109.54444 * 61.31412 * 24 23 22 36 36 H 1.08998 * 109.50663 * 297.54080 * 25 20 19 37 37 H 1.09002 * 109.50398 * 57.62818 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8815 2.3964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2138 0.0010 9 6 1.2986 -2.4406 0.0005 10 8 0.0806 -2.4406 -0.0004 11 7 1.9724 -3.6078 0.0005 12 6 1.2792 -4.8132 -0.1057 13 6 0.1174 -4.8847 -0.8657 14 6 -0.5673 -6.0786 -0.9704 15 6 -0.1009 -7.2103 -0.3199 16 17 -0.9696 -8.7070 -0.4572 17 6 1.0582 -7.1520 0.4345 18 9 1.5127 -8.2589 1.0619 19 6 1.7508 -5.9535 0.5507 20 7 2.9181 -5.8894 1.3167 21 6 2.6350 -6.1655 2.7327 22 6 3.9265 -6.0273 3.5431 23 8 4.9169 -6.9085 3.0062 24 6 5.2175 -6.6672 1.6291 25 6 3.9388 -6.8128 0.7999 26 1 -0.4849 0.8401 -0.0004 27 1 2.9396 -3.6095 0.0744 28 1 -0.2495 -4.0056 -1.3746 29 1 -1.4694 -6.1314 -1.5619 30 1 1.8959 -5.4543 3.1015 31 1 2.2475 -7.1792 2.8355 32 1 4.2846 -4.9995 3.4847 33 1 3.7327 -6.2872 4.5838 34 1 5.9579 -7.3900 1.2861 35 1 5.6134 -5.6582 1.5136 36 1 3.5730 -7.8370 0.8719 37 1 4.1509 -6.5744 -0.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282542275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:05 Heat of formation + Delta-G solvation = -110.704610 kcal Electronic energy + Delta-G solvation = -26305.857455 eV Core-core repulsion = 22216.070401 eV Total energy + Delta-G solvation = -4089.787054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.26160 -41.49749 -40.19674 -38.93925 -37.66828 -36.44144 -35.26449 -34.42198 -32.22724 -31.22811 -30.66297 -28.51076 -27.36111 -25.06044 -24.31270 -23.41272 -21.84155 -21.59061 -19.64553 -18.91788 -18.36329 -17.95235 -17.44644 -17.24172 -16.73239 -16.66444 -16.50804 -16.23455 -16.00425 -15.82420 -15.30776 -15.13788 -14.83566 -14.55814 -14.29291 -13.95476 -13.56819 -13.44705 -13.29318 -13.07850 -12.87012 -12.72437 -12.65723 -12.42626 -12.28473 -12.09181 -11.97748 -11.60521 -11.05991 -10.81673 -10.71949 -10.01674 -9.78277 -9.67443 -8.85163 -8.39545 -7.01654 -0.07372 -0.02419 0.97021 1.39568 1.42626 1.59512 2.18090 2.21960 2.45995 2.50938 2.69771 2.90669 3.12323 3.62343 3.77040 3.85029 3.86739 4.04078 4.10421 4.17220 4.20066 4.32901 4.48359 4.57133 4.66216 4.67699 4.76410 4.88980 4.97104 4.98373 5.14263 5.23288 5.47746 5.69009 5.88190 5.92985 6.12394 6.12593 6.32642 6.74753 7.34542 8.35774 8.54829 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.004673 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.413816 B = 5990.719207 C = 8018.420855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.037 3.963 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.532 3.468 10 O -0.609 6.609 11 N -0.672 5.672 12 C 0.233 3.767 13 C -0.140 4.140 14 C -0.052 4.052 15 C -0.108 4.108 16 Cl -0.052 7.052 17 C 0.099 3.901 18 F -0.127 7.127 19 C 0.007 3.993 20 N -0.487 5.487 21 C 0.019 3.981 22 C 0.072 3.928 23 O -0.397 6.397 24 C 0.068 3.932 25 C 0.011 3.989 26 H 0.280 0.720 27 H 0.410 0.590 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -11.728 1.190 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.182 4.182 3 Si 0.816 3.184 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.342 3.658 10 O -0.496 6.496 11 N -0.313 5.313 12 C 0.131 3.869 13 C -0.162 4.162 14 C -0.071 4.071 15 C -0.138 4.138 16 Cl -0.023 7.023 17 C 0.077 3.923 18 F -0.106 7.106 19 C -0.093 4.093 20 N -0.209 5.209 21 C -0.108 4.108 22 C -0.005 4.005 23 O -0.315 6.315 24 C -0.009 4.009 25 C -0.116 4.116 26 H 0.090 0.910 27 H 0.246 0.754 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.723 -11.351 1.298 13.256 hybrid contribution -0.223 -0.171 -0.033 0.283 sum 6.500 -11.522 1.265 13.289 Atomic orbital electron populations 1.70141 1.09530 1.29493 1.33242 1.26922 0.95425 1.04867 0.91014 0.84978 0.79502 0.75335 0.78631 1.16953 1.19222 1.19394 1.20545 0.95525 0.90435 1.52645 0.89260 1.17354 0.87270 0.83384 0.77796 1.90640 1.15205 1.86883 1.56848 1.43690 1.10487 1.03008 1.74148 1.17800 0.92484 0.85762 0.90901 1.21209 0.96489 0.98193 1.00303 1.20975 0.99842 0.88976 0.97329 1.20751 0.96224 0.90127 1.06661 1.98340 1.75486 1.31245 1.97237 1.17835 0.94315 0.83320 0.96876 1.91443 1.88250 1.50710 1.80147 1.18317 0.96711 0.91136 1.03109 1.59577 1.06471 1.52745 1.02073 1.22899 0.99976 1.00623 0.87295 1.22697 0.85639 0.94563 0.97601 1.87947 1.59061 1.58422 1.26101 1.22785 0.94855 1.03069 0.80163 1.23076 0.92925 0.94732 1.00838 0.91017 0.75378 0.85353 0.81991 0.90707 0.93480 0.91852 0.86291 0.85884 0.91530 0.93305 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.83 11.73 21.85 0.26 -44.58 16 2 C 0.04 1.88 5.50 85.33 0.47 2.35 16 3 Si 1.00 37.58 29.56 68.60 2.03 39.60 16 4 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.56 -28.93 9.31 23.58 0.22 -28.71 16 8 H 0.09 4.16 7.85 -2.91 -0.02 4.14 16 9 C 0.53 28.32 7.31 85.09 0.62 28.95 16 10 O -0.61 -36.95 12.56 -4.68 -0.06 -37.01 16 11 N -0.67 -28.84 5.15 -310.99 -1.60 -30.44 16 12 C 0.23 9.22 6.30 38.48 0.24 9.46 16 13 C -0.14 -5.53 8.65 22.41 0.19 -5.34 16 14 C -0.05 -1.67 9.82 22.31 0.22 -1.46 16 15 C -0.11 -3.36 6.33 22.40 0.14 -3.22 16 16 Cl -0.05 -1.39 28.60 -2.72 -0.08 -1.47 16 17 C 0.10 3.20 6.68 22.48 0.15 3.35 16 18 F -0.13 -3.92 12.98 44.97 0.58 -3.33 16 19 C 0.01 0.22 4.76 38.41 0.18 0.40 16 20 N -0.49 -14.48 4.16 -693.32 -2.88 -17.37 16 21 C 0.02 0.53 5.34 86.31 0.46 0.99 16 22 C 0.07 1.67 7.01 72.01 0.50 2.17 16 23 O -0.40 -9.65 10.82 -148.98 -1.61 -11.27 16 24 C 0.07 1.40 7.01 72.01 0.50 1.91 16 25 C 0.01 0.26 5.30 86.31 0.46 0.72 16 26 H 0.28 14.18 8.29 -92.71 -0.77 13.41 16 27 H 0.41 15.61 8.43 -92.71 -0.78 14.83 16 28 H 0.13 5.89 6.42 -2.91 -0.02 5.87 16 29 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.36 6.42 -2.38 -0.02 1.35 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.28 6.12 -2.39 -0.01 1.26 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.30 326.60 1.36 -63.94 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.36 Total: 30.33 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 4.37 Total: 11.58 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -4.23 Total: -92.38 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -1.67 Total: -48.27 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.58 Total: -3.33 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -65.30 1.36 -63.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282542275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.768 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds