Wall clock time and date at job start Tue Mar 31 2020 15:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 S 2.05006 * 103.00104 * 2 1 4 4 C 1.81398 * 102.99794 * 84.99789 * 3 2 1 5 5 C 1.52993 * 109.46957 * 70.00595 * 4 3 2 6 6 N 1.46504 * 109.46981 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00097 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00396 * 180.02562 * 7 6 5 10 10 C 1.39937 * 120.00217 * 174.73479 * 9 7 6 11 11 C 1.38954 * 120.03519 * 326.33314 * 10 9 7 12 12 C 1.38162 * 120.06584 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.14270 * 359.72087 * 12 11 10 14 14 C 1.38913 * 120.06325 * 0.56049 * 13 12 11 15 15 O 1.35755 * 120.03103 * 179.72108 * 14 13 12 16 16 C 1.34833 * 116.99918 * 173.81829 * 15 14 13 17 17 H 1.07995 * 119.99891 * 354.58595 * 16 15 14 18 18 C 1.38647 * 119.99879 * 174.59004 * 16 15 14 19 19 N 1.31553 * 119.99863 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47036 * 90.00470 * 20 18 16 22 22 H 1.48502 * 109.47131 * 210.00079 * 20 18 16 23 23 H 1.48499 * 109.47540 * 330.00277 * 20 18 16 24 24 C 1.38708 * 120.03534 * 146.35441 * 10 9 7 25 25 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 300.00267 * 1 2 3 27 27 H 1.08999 * 109.46732 * 60.00003 * 1 2 3 28 28 H 1.08995 * 109.47577 * 309.99812 * 4 3 2 29 29 H 1.09008 * 109.46887 * 189.99978 * 4 3 2 30 30 H 1.09004 * 109.47839 * 59.99824 * 5 4 3 31 31 H 1.08999 * 109.47373 * 299.99453 * 5 4 3 32 32 H 0.96998 * 120.00231 * 359.97438 * 6 5 4 33 33 H 0.97001 * 119.99318 * 354.72331 * 9 7 6 34 34 H 1.07998 * 119.97096 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.92910 * 180.02562 * 12 11 10 36 36 H 1.07997 * 119.96547 * 180.27359 * 13 12 11 37 37 H 0.97006 * 120.00052 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.07285 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2752 1.9975 0.0000 4 6 2.2168 2.4297 1.7608 5 6 3.3986 1.7814 2.4844 6 7 3.3518 2.1309 3.9064 7 6 4.2995 1.6682 4.7457 8 8 5.1930 0.9602 4.3227 9 7 4.2562 1.9893 6.0539 10 6 5.1740 1.4214 6.9445 11 6 5.6264 0.1230 6.7433 12 6 6.5322 -0.4385 7.6225 13 6 6.9955 0.2904 8.7010 14 6 6.5426 1.5867 8.9109 15 8 6.9939 2.3003 9.9739 16 6 6.6155 3.5922 10.0491 17 1 6.0547 4.0385 9.2412 18 6 6.9463 4.3477 11.1636 19 7 6.5775 5.6084 11.2367 20 14 7.9157 3.5756 12.5613 21 1 9.3689 3.7569 12.3150 22 1 7.5452 4.2304 13.8416 23 1 7.6038 2.1258 12.6384 24 6 5.6329 2.1537 8.0295 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.2836 2.0686 2.1929 29 1 2.2731 3.5127 1.8711 30 1 4.3319 2.1426 2.0524 31 1 3.3424 0.6984 2.3742 32 1 2.6388 2.6954 4.2439 33 1 3.5889 2.6143 6.3780 34 1 5.2696 -0.4478 5.8987 35 1 6.8826 -1.4477 7.4637 36 1 7.7068 -0.1498 9.3840 37 1 6.8086 6.1369 12.0166 38 1 5.2823 3.1627 8.1886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285022707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:20 Heat of formation + Delta-G solvation = -20.516824 kcal Electronic energy + Delta-G solvation = -22026.205746 eV Core-core repulsion = 18508.586410 eV Total energy + Delta-G solvation = -3517.619336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.42188 -38.93653 -36.88787 -35.45111 -34.26690 -32.36085 -31.15044 -29.55425 -29.33316 -28.48319 -25.22077 -23.94623 -22.07212 -21.76523 -20.53309 -19.52654 -18.64393 -17.82159 -17.63537 -16.47475 -16.10515 -15.92055 -15.27039 -15.18273 -14.70239 -14.59172 -14.46254 -14.17447 -14.06334 -13.80475 -13.58687 -13.51167 -13.08576 -12.64581 -12.45732 -12.27548 -12.17204 -12.07979 -11.68930 -11.21722 -10.97128 -10.80570 -10.69574 -10.31109 -10.07944 -9.70652 -9.50083 -9.29675 -8.86913 -8.84766 -8.66470 -7.77571 -7.26689 -6.42619 -4.09650 -1.14742 1.10733 1.52219 1.98629 2.30595 2.71093 3.21683 3.25523 3.27432 3.40560 4.15551 4.18895 4.23932 4.28858 4.51623 4.52855 4.56442 4.82315 4.89667 5.08130 5.13229 5.36792 5.47692 5.63466 5.93271 6.00470 6.15046 6.18712 6.22115 6.44241 6.69352 6.92077 7.15007 7.22396 7.25916 7.61807 7.77686 7.95879 8.03145 8.57688 8.93122 9.55992 10.65163 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.002059 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.962927 B =13593.854547 C =14325.137616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.139 6.139 3 S -0.121 6.121 4 C -0.119 4.119 5 C 0.142 3.858 6 N -0.747 5.747 7 C 0.704 3.296 8 O -0.567 6.567 9 N -0.681 5.681 10 C 0.198 3.802 11 C -0.197 4.197 12 C -0.064 4.064 13 C -0.202 4.202 14 C 0.174 3.826 15 O -0.216 6.216 16 C -0.388 4.388 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.246 4.246 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.404 0.596 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.279 0.721 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 -7.543 -19.501 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S -0.021 6.021 3 S -0.001 6.001 4 C -0.274 4.274 5 C 0.016 3.984 6 N -0.405 5.405 7 C 0.404 3.596 8 O -0.443 6.443 9 N -0.328 5.328 10 C 0.104 3.896 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.222 4.222 14 C 0.122 3.878 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.268 4.268 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.556 -8.275 -20.573 25.483 hybrid contribution -1.549 0.958 1.887 2.622 sum -14.105 -7.317 -18.686 24.529 Atomic orbital electron populations 1.24052 0.94172 1.07071 1.05986 1.89670 1.10338 1.07370 1.94692 1.89523 1.88370 1.11540 1.10690 1.24233 1.02311 1.05790 0.95075 1.21512 0.97422 1.00567 0.78929 1.45089 1.30225 1.56819 1.08362 1.15855 0.82254 0.80721 0.80730 1.90967 1.35979 1.41271 1.76058 1.42570 1.35764 1.48595 1.05863 1.17180 0.91313 0.91596 0.89479 1.20634 1.04547 0.94235 1.02408 1.20529 0.95935 0.98553 0.93256 1.20237 1.06602 0.93704 1.01619 1.18798 0.91073 0.90718 0.87217 1.83615 1.65006 1.24160 1.39375 1.20716 1.37211 0.81806 1.06649 0.87839 1.24462 0.96948 0.94856 0.97771 1.69644 1.44865 1.06734 1.30719 0.86173 0.80175 0.80407 0.80116 1.19856 1.20893 1.18296 1.20893 1.04908 1.01802 0.99150 0.87014 0.89793 0.89289 0.88493 0.85899 0.90168 0.90457 0.76988 0.76136 0.86034 0.86445 0.86394 0.91097 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.14 -1.09 22.43 -89.68 -2.01 -3.10 16 3 S -0.12 -0.93 22.25 -89.68 -2.00 -2.92 16 4 C -0.12 -0.72 6.06 37.15 0.23 -0.49 16 5 C 0.14 1.31 5.63 -4.04 -0.02 1.29 16 6 N -0.75 -7.42 5.56 -65.22 -0.36 -7.78 16 7 C 0.70 10.50 8.30 -86.92 -0.72 9.78 16 8 O -0.57 -10.77 14.05 5.29 0.07 -10.70 16 9 N -0.68 -10.19 5.35 -14.24 -0.08 -10.27 16 10 C 0.20 3.75 6.27 -83.72 -0.52 3.22 16 11 C -0.20 -3.72 8.65 -39.34 -0.34 -4.06 16 12 C -0.06 -1.16 10.03 -39.64 -0.40 -1.55 16 13 C -0.20 -4.07 9.99 -39.36 -0.39 -4.47 16 14 C 0.17 4.04 6.64 -39.13 -0.26 3.78 16 15 O -0.22 -5.67 8.58 0.03 0.00 -5.67 16 16 C -0.39 -10.80 9.90 30.88 0.31 -10.49 16 17 H 0.10 2.93 5.53 -52.49 -0.29 2.64 16 18 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 19 N -0.88 -25.16 13.96 55.48 0.77 -24.38 16 20 Si 0.91 21.55 28.62 -169.99 -4.86 16.69 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.26 -6.18 7.11 56.52 0.40 -5.77 16 24 C -0.25 -5.25 9.04 -39.21 -0.35 -5.61 16 25 H 0.11 0.37 8.14 -51.92 -0.42 -0.06 16 26 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 27 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.12 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.83 7.74 -51.93 -0.40 0.43 16 32 H 0.40 2.60 8.49 -40.82 -0.35 2.25 16 33 H 0.40 4.72 8.83 -40.82 -0.36 4.36 16 34 H 0.12 2.27 6.43 -52.49 -0.34 1.93 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.14 2.96 5.71 -52.49 -0.30 2.66 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -33.23 354.91 -9.16 -42.39 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.55 Total: 6.88 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.49 Total: -6.48 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.34 Total: -42.43 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.07 Total: -16.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -4.01 Total: -6.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.23 -9.16 -42.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285022707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.869 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds