Wall clock time and date at job start Tue Mar 31 2020 15:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 S 2.05006 * 103.00104 * 2 1 4 4 C 1.81398 * 102.99794 * 84.99789 * 3 2 1 5 5 C 1.52993 * 109.46957 * 70.00595 * 4 3 2 6 6 N 1.46504 * 109.46981 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00097 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00396 * 180.02562 * 7 6 5 10 10 C 1.39937 * 120.00217 * 174.73479 * 9 7 6 11 11 C 1.38954 * 120.03519 * 326.33314 * 10 9 7 12 12 C 1.38162 * 120.06584 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.14270 * 359.72087 * 12 11 10 14 14 C 1.38913 * 120.06325 * 0.56049 * 13 12 11 15 15 O 1.35755 * 120.03103 * 179.72108 * 14 13 12 16 16 C 1.34833 * 116.99918 * 173.81829 * 15 14 13 17 17 H 1.07995 * 119.99891 * 354.58595 * 16 15 14 18 18 C 1.38647 * 119.99879 * 174.59004 * 16 15 14 19 19 N 1.31553 * 119.99863 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47036 * 90.00470 * 20 18 16 22 22 H 1.48502 * 109.47131 * 210.00079 * 20 18 16 23 23 H 1.48499 * 109.47540 * 330.00277 * 20 18 16 24 24 C 1.38708 * 120.03534 * 146.35441 * 10 9 7 25 25 H 1.08999 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 300.00267 * 1 2 3 27 27 H 1.08999 * 109.46732 * 60.00003 * 1 2 3 28 28 H 1.08995 * 109.47577 * 309.99812 * 4 3 2 29 29 H 1.09008 * 109.46887 * 189.99978 * 4 3 2 30 30 H 1.09004 * 109.47839 * 59.99824 * 5 4 3 31 31 H 1.08999 * 109.47373 * 299.99453 * 5 4 3 32 32 H 0.96998 * 120.00231 * 359.97438 * 6 5 4 33 33 H 0.97001 * 119.99318 * 354.72331 * 9 7 6 34 34 H 1.07998 * 119.97096 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.92910 * 180.02562 * 12 11 10 36 36 H 1.07997 * 119.96547 * 180.27359 * 13 12 11 37 37 H 0.97006 * 120.00052 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.07285 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2752 1.9975 0.0000 4 6 2.2168 2.4297 1.7608 5 6 3.3986 1.7814 2.4844 6 7 3.3518 2.1309 3.9064 7 6 4.2995 1.6682 4.7457 8 8 5.1930 0.9602 4.3227 9 7 4.2562 1.9893 6.0539 10 6 5.1740 1.4214 6.9445 11 6 5.6264 0.1230 6.7433 12 6 6.5322 -0.4385 7.6225 13 6 6.9955 0.2904 8.7010 14 6 6.5426 1.5867 8.9109 15 8 6.9939 2.3003 9.9739 16 6 6.6155 3.5922 10.0491 17 1 6.0547 4.0385 9.2412 18 6 6.9463 4.3477 11.1636 19 7 6.5775 5.6084 11.2367 20 14 7.9157 3.5756 12.5613 21 1 9.3689 3.7569 12.3150 22 1 7.5452 4.2304 13.8416 23 1 7.6038 2.1258 12.6384 24 6 5.6329 2.1537 8.0295 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.2836 2.0686 2.1929 29 1 2.2731 3.5127 1.8711 30 1 4.3319 2.1426 2.0524 31 1 3.3424 0.6984 2.3742 32 1 2.6388 2.6954 4.2439 33 1 3.5889 2.6143 6.3780 34 1 5.2696 -0.4478 5.8987 35 1 6.8826 -1.4477 7.4637 36 1 7.7068 -0.1498 9.3840 37 1 6.8086 6.1369 12.0166 38 1 5.2823 3.1627 8.1886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285022707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:19 Heat of formation + Delta-G solvation = -41.861020 kcal Electronic energy + Delta-G solvation = -22027.131300 eV Core-core repulsion = 18508.586410 eV Total energy + Delta-G solvation = -3518.544890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74022 -40.57770 -38.44577 -36.52142 -35.67756 -34.39086 -32.09797 -30.92616 -29.97887 -29.87307 -27.18326 -24.89086 -23.40636 -23.28511 -21.88813 -20.28093 -19.99835 -19.40655 -19.26544 -17.57013 -17.14364 -16.91998 -16.75715 -16.37216 -15.94413 -15.86725 -15.70317 -15.52764 -15.26609 -14.97729 -14.66691 -14.46867 -14.17760 -14.00835 -13.98102 -13.38291 -13.27663 -13.01531 -12.82017 -12.73116 -12.68311 -12.38748 -12.07463 -11.58609 -11.38046 -11.32302 -11.18535 -10.81757 -10.28649 -9.42694 -9.37119 -9.25715 -8.88822 -8.48559 -6.20965 -1.72348 0.42170 0.57952 0.67225 1.07693 1.34326 1.38315 1.54048 1.63729 2.00349 2.30072 2.79093 3.09760 3.12429 3.18471 3.51862 3.78705 4.11966 4.21536 4.27419 4.31217 4.32827 4.43500 4.60419 4.62991 4.67707 4.76923 4.83562 4.92753 5.24941 5.32674 5.37752 5.50044 5.65885 5.76180 5.87223 5.97140 6.23890 6.86103 6.89126 7.39505 7.59698 8.62680 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.002059 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.962927 B =13593.854547 C =14325.137616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.189 6.189 3 S -0.137 6.137 4 C -0.104 4.104 5 C 0.144 3.856 6 N -0.723 5.723 7 C 0.702 3.298 8 O -0.609 6.609 9 N -0.674 5.674 10 C 0.202 3.798 11 C -0.193 4.193 12 C -0.052 4.052 13 C -0.203 4.203 14 C 0.140 3.860 15 O -0.240 6.240 16 C -0.396 4.396 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.255 4.255 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.416 0.584 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.284 0.716 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.608 -8.890 -20.150 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.071 6.071 3 S -0.018 6.018 4 C -0.258 4.258 5 C 0.018 3.982 6 N -0.381 5.381 7 C 0.402 3.598 8 O -0.488 6.488 9 N -0.322 5.322 10 C 0.107 3.893 11 C -0.214 4.214 12 C -0.071 4.071 13 C -0.223 4.223 14 C 0.091 3.909 15 O -0.147 6.147 16 C -0.473 4.473 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.791 3.209 21 H -0.193 1.193 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.277 4.277 25 H 0.143 0.857 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.254 0.746 33 H 0.257 0.743 34 H 0.147 0.853 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.802 -9.607 -21.272 27.116 hybrid contribution -1.323 1.224 1.802 2.548 sum -15.125 -8.383 -19.470 26.041 Atomic orbital electron populations 1.24097 0.90464 1.08187 1.07003 1.89773 1.14248 1.08049 1.94992 1.89564 1.89159 1.11077 1.11984 1.24177 1.01576 1.06618 0.93432 1.21521 0.98329 1.00093 0.78276 1.44887 1.29268 1.55805 1.08118 1.16015 0.82572 0.80471 0.80726 1.90936 1.37893 1.43245 1.76706 1.42449 1.35358 1.48727 1.05700 1.17204 0.91405 0.91624 0.89117 1.20927 1.04047 0.94032 1.02345 1.20968 0.94521 0.99960 0.91606 1.20531 1.06673 0.92584 1.02493 1.19342 0.92374 0.91992 0.87235 1.83560 1.66654 1.23372 1.41136 1.20673 1.37154 0.83012 1.06431 0.89993 1.25247 0.98069 0.95311 1.00133 1.69720 1.46709 1.07913 1.31879 0.85243 0.78834 0.79265 0.77571 1.19276 1.19346 1.18546 1.20858 1.05319 1.01450 1.00105 0.85687 0.88562 0.88488 0.86328 0.83891 0.91819 0.91805 0.74619 0.74295 0.85306 0.82394 0.84779 0.90622 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.76 113.37 1.22 0.41 16 2 S -0.19 -2.78 22.43 -20.04 -0.45 -3.23 16 3 S -0.14 -1.93 22.25 -20.04 -0.45 -2.38 16 4 C -0.10 -0.99 6.06 71.98 0.44 -0.56 16 5 C 0.14 2.45 5.63 86.38 0.49 2.93 16 6 N -0.72 -12.86 5.56 -478.53 -2.66 -15.52 16 7 C 0.70 19.96 8.30 179.05 1.49 21.44 16 8 O -0.61 -22.57 14.05 -4.00 -0.06 -22.62 16 9 N -0.67 -19.39 5.35 -317.24 -1.70 -21.09 16 10 C 0.20 7.48 6.27 38.13 0.24 7.72 16 11 C -0.19 -6.88 8.65 22.42 0.19 -6.68 16 12 C -0.05 -1.74 10.03 22.23 0.22 -1.52 16 13 C -0.20 -7.90 9.99 22.41 0.22 -7.68 16 14 C 0.14 6.56 6.64 22.56 0.15 6.71 16 15 O -0.24 -12.85 8.58 -22.82 -0.20 -13.04 16 16 C -0.40 -22.86 9.90 67.92 0.67 -22.18 16 17 H 0.08 4.91 5.53 -2.91 -0.02 4.89 16 18 C 0.01 0.62 5.49 84.83 0.47 1.09 16 19 N -0.92 -53.97 13.96 21.61 0.30 -53.67 16 20 Si 0.97 44.83 28.62 68.60 1.96 46.80 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.26 -11.10 9.04 22.51 0.20 -10.90 16 25 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.31 7.74 -2.39 -0.02 1.29 16 32 H 0.42 4.23 8.49 -92.71 -0.79 3.44 16 33 H 0.42 9.26 8.83 -92.71 -0.82 8.44 16 34 H 0.13 4.52 6.43 -2.91 -0.02 4.50 16 35 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 38 H 0.12 5.54 5.71 -2.91 -0.02 5.52 16 Total: -1.00 -74.30 354.91 2.27 -72.03 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -0.49 Total: 21.96 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 6.00 Total: -9.23 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.05 Total: -90.28 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.25 Total: -35.66 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.96 Total: 46.80 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -0.90 Total: -5.61 kcal Total: -74.30 2.27 -72.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285022707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.168 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds