Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47106 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46811 * 29.99963 * 3 2 1 6 6 H 1.48493 * 109.47007 * 149.99898 * 3 2 1 7 7 C 1.38807 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00044 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99758 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39006 * 120.00092 * 179.97438 * 13 11 10 15 15 N 1.29623 * 124.94958 * 180.02562 * 14 13 11 16 16 C 1.31985 * 116.92158 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.71403 * 179.97438 * 16 15 14 18 18 C 1.53174 * 109.53924 * 214.53116 * 17 16 15 19 19 C 1.53095 * 109.16058 * 183.15482 * 18 17 16 20 20 O 1.42896 * 109.41572 * 57.60977 * 19 18 17 21 21 C 1.42902 * 114.09852 * 298.84005 * 20 19 18 22 22 C 1.53092 * 109.41310 * 61.15976 * 21 20 19 23 23 C 1.33442 * 114.56747 * 0.02562 * 16 15 14 24 24 S 1.70968 * 124.94258 * 0.03053 * 14 13 11 25 25 H 0.96994 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47179 * 59.99767 * 10 9 7 27 27 H 1.08995 * 109.46798 * 299.99788 * 10 9 7 28 28 H 0.96995 * 120.00069 * 0.02562 * 13 11 10 29 29 H 1.08996 * 109.54400 * 334.79429 * 17 16 15 30 30 H 1.09001 * 109.52883 * 303.05558 * 18 17 16 31 31 H 1.09001 * 109.52916 * 63.25035 * 18 17 16 32 32 H 1.09004 * 109.48160 * 297.62206 * 19 18 17 33 33 H 1.09005 * 109.47966 * 177.59092 * 19 18 17 34 34 H 1.09002 * 109.48402 * 301.17924 * 21 20 19 35 35 H 1.09003 * 109.48354 * 181.14051 * 21 20 19 36 36 H 1.09005 * 109.52357 * 182.49084 * 22 21 20 37 37 H 1.08999 * 109.52560 * 62.29460 * 22 21 20 38 38 H 1.07997 * 125.96916 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0458 -4.4946 0.0011 14 6 7.4169 -4.7233 0.0005 15 7 7.9745 -5.8935 0.0002 16 6 9.2939 -5.9267 0.0001 17 6 10.0762 -7.2148 0.0004 18 6 11.3586 -7.0352 0.8186 19 6 12.1842 -8.3225 0.7479 20 8 12.4703 -8.6290 -0.6181 21 6 11.3098 -8.8541 -1.4210 22 6 10.4491 -7.5881 -1.4376 23 6 9.8791 -4.7275 0.0009 24 16 8.6134 -3.5021 0.0000 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8893 27 1 3.6434 -3.4317 0.8907 28 1 5.4292 -5.2434 0.0011 29 1 9.4711 -8.0088 0.4381 30 1 11.9386 -6.2078 0.4098 31 1 11.1020 -6.8236 1.8566 32 1 11.6195 -9.1414 1.1937 33 1 13.1181 -8.1858 1.2931 34 1 10.7335 -9.6799 -1.0037 35 1 11.6137 -9.1003 -2.4384 36 1 9.5418 -7.7720 -2.0131 37 1 11.0106 -6.7718 -1.8918 38 1 10.9428 -4.5407 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286319517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = -41.268024 kcal Electronic energy + Delta-G solvation = -22138.605048 eV Core-core repulsion = 18620.085872 eV Total energy + Delta-G solvation = -3518.519176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69423 -39.99922 -38.87623 -35.38611 -33.90621 -32.54718 -31.50773 -30.40693 -28.83411 -26.19991 -25.74843 -24.14861 -23.80694 -21.62473 -21.13232 -19.52762 -18.33141 -17.87941 -16.78285 -16.67209 -16.51734 -16.35276 -15.96886 -15.14139 -15.09779 -14.99999 -14.55197 -14.25246 -13.96388 -13.89567 -13.61013 -13.09384 -12.90076 -12.76961 -12.52272 -12.06648 -11.69586 -11.41599 -11.37977 -11.19643 -11.10125 -10.81270 -10.78528 -10.65810 -10.03991 -9.96388 -9.86260 -9.78595 -9.22543 -9.11021 -8.69147 -8.30915 -7.08243 -6.39010 -4.13733 0.69756 1.11958 1.85674 2.24393 2.28420 2.87962 2.92387 3.25124 3.40838 3.43100 3.50974 4.06460 4.22494 4.43585 4.46266 4.49305 4.63073 4.81478 4.85721 4.96480 4.99775 5.02957 5.12388 5.24412 5.30709 5.32632 5.44158 5.47913 5.50634 5.65400 5.70602 5.75609 5.79902 5.96822 6.14020 6.79396 6.81675 7.70015 7.78720 7.83652 8.31443 9.06010 10.69955 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044477 B = 0.002177 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.387907 B =12859.053276 C =13211.762814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.091 0.909 9 S -0.132 6.132 10 C -0.120 4.120 11 C 0.530 3.470 12 O -0.480 6.480 13 N -0.626 5.626 14 C 0.252 3.748 15 N -0.518 5.518 16 C 0.098 3.902 17 C -0.012 4.012 18 C -0.149 4.149 19 C 0.062 3.938 20 O -0.384 6.384 21 C 0.062 3.938 22 C -0.145 4.145 23 C -0.324 4.324 24 S 0.248 5.752 25 H 0.272 0.728 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.424 0.576 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.018 -16.245 0.162 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.673 4.673 8 H 0.109 0.891 9 S 0.094 5.906 10 C -0.271 4.271 11 C 0.316 3.684 12 O -0.352 6.352 13 N -0.278 5.278 14 C -0.115 4.115 15 N -0.242 5.242 16 C -0.035 4.035 17 C -0.033 4.033 18 C -0.187 4.187 19 C -0.015 4.015 20 O -0.303 6.303 21 C -0.015 4.015 22 C -0.183 4.183 23 C -0.465 4.465 24 S 0.499 5.501 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.262 0.738 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 22.788 -13.877 0.094 26.681 hybrid contribution -1.163 -1.497 0.086 1.897 sum 21.625 -15.374 0.180 26.533 Atomic orbital electron populations 1.69925 1.05898 1.27943 1.47440 1.24709 0.94474 0.98992 0.93048 0.86748 0.81854 0.83308 0.80015 1.19103 1.19775 1.15920 1.22263 0.87793 0.97713 1.59498 0.89122 1.84845 1.09947 0.98314 1.97504 1.23244 0.91051 1.05853 1.06923 1.20856 0.92050 0.80683 0.74775 1.90655 1.57655 1.41078 1.45832 1.43036 1.02525 1.10410 1.71783 1.23464 0.91339 0.93986 1.02730 1.66112 1.10942 1.23960 1.23136 1.19519 0.87244 0.95256 1.01464 1.19681 0.94233 0.93033 0.96351 1.22298 0.95957 0.99363 1.01055 1.22591 1.00157 0.95496 0.83281 1.87934 1.31042 1.90647 1.20639 1.22603 0.87085 0.95891 0.95914 1.22233 1.00750 0.99134 0.96204 1.27220 1.05637 0.97101 1.16523 1.85164 0.92159 1.05595 1.67185 0.91773 0.87378 0.87331 0.73754 0.89477 0.90485 0.90413 0.93029 0.88632 0.93000 0.88658 0.90434 0.90724 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.97 55.49 0.78 -24.81 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 20.87 27.74 -169.99 -4.72 16.16 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 7 C -0.53 -14.37 10.04 30.94 0.31 -14.06 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.13 -3.10 18.55 -107.50 -1.99 -5.10 16 10 C -0.12 -2.08 6.16 36.00 0.22 -1.86 16 11 C 0.53 8.53 7.81 -10.99 -0.09 8.44 16 12 O -0.48 -9.03 13.33 5.55 0.07 -8.96 16 13 N -0.63 -8.27 5.40 -13.07 -0.07 -8.34 16 14 C 0.25 3.53 8.19 -87.35 -0.72 2.81 16 15 N -0.52 -6.96 10.58 -11.28 -0.12 -7.08 16 16 C 0.10 1.14 5.74 -84.20 -0.48 0.65 16 17 C -0.01 -0.10 2.69 -91.59 -0.25 -0.35 16 18 C -0.15 -1.09 4.98 -26.59 -0.13 -1.22 16 19 C 0.06 0.41 6.84 37.21 0.25 0.67 16 20 O -0.38 -3.35 10.77 -35.23 -0.38 -3.73 16 21 C 0.06 0.44 6.84 37.21 0.25 0.70 16 22 C -0.14 -1.18 5.40 -26.59 -0.14 -1.32 16 23 C -0.32 -3.59 10.34 29.06 0.30 -3.29 16 24 S 0.25 3.32 20.22 -107.50 -2.17 1.15 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.11 1.71 8.14 -51.92 -0.42 1.28 16 28 H 0.42 4.39 8.82 -40.82 -0.36 4.03 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.56 6.78 -51.93 -0.35 0.21 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.17 1.49 6.89 -52.49 -0.36 1.13 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -32.10 342.29 -8.88 -40.99 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.88 Total: 0.76 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.56 Total: -6.19 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.59 Total: -40.24 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.31 Total: -12.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.72 Total: 16.16 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -4.17 Total: -3.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.10 -8.88 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286319517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.281 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds