Wall clock time and date at job start Tue Mar 31 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47106 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46811 * 29.99963 * 3 2 1 6 6 H 1.48493 * 109.47007 * 149.99898 * 3 2 1 7 7 C 1.38807 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00044 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99758 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39006 * 120.00092 * 179.97438 * 13 11 10 15 15 N 1.29623 * 124.94958 * 180.02562 * 14 13 11 16 16 C 1.31985 * 116.92158 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.71403 * 179.97438 * 16 15 14 18 18 C 1.53174 * 109.53924 * 214.53116 * 17 16 15 19 19 C 1.53095 * 109.16058 * 183.15482 * 18 17 16 20 20 O 1.42896 * 109.41572 * 57.60977 * 19 18 17 21 21 C 1.42902 * 114.09852 * 298.84005 * 20 19 18 22 22 C 1.53092 * 109.41310 * 61.15976 * 21 20 19 23 23 C 1.33442 * 114.56747 * 0.02562 * 16 15 14 24 24 S 1.70968 * 124.94258 * 0.03053 * 14 13 11 25 25 H 0.96994 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47179 * 59.99767 * 10 9 7 27 27 H 1.08995 * 109.46798 * 299.99788 * 10 9 7 28 28 H 0.96995 * 120.00069 * 0.02562 * 13 11 10 29 29 H 1.08996 * 109.54400 * 334.79429 * 17 16 15 30 30 H 1.09001 * 109.52883 * 303.05558 * 18 17 16 31 31 H 1.09001 * 109.52916 * 63.25035 * 18 17 16 32 32 H 1.09004 * 109.48160 * 297.62206 * 19 18 17 33 33 H 1.09005 * 109.47966 * 177.59092 * 19 18 17 34 34 H 1.09002 * 109.48402 * 301.17924 * 21 20 19 35 35 H 1.09003 * 109.48354 * 181.14051 * 21 20 19 36 36 H 1.09005 * 109.52357 * 182.49084 * 22 21 20 37 37 H 1.08999 * 109.52560 * 62.29460 * 22 21 20 38 38 H 1.07997 * 125.96916 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0458 -4.4946 0.0011 14 6 7.4169 -4.7233 0.0005 15 7 7.9745 -5.8935 0.0002 16 6 9.2939 -5.9267 0.0001 17 6 10.0762 -7.2148 0.0004 18 6 11.3586 -7.0352 0.8186 19 6 12.1842 -8.3225 0.7479 20 8 12.4703 -8.6290 -0.6181 21 6 11.3098 -8.8541 -1.4210 22 6 10.4491 -7.5881 -1.4376 23 6 9.8791 -4.7275 0.0009 24 16 8.6134 -3.5021 0.0000 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8893 27 1 3.6434 -3.4317 0.8907 28 1 5.4292 -5.2434 0.0011 29 1 9.4711 -8.0088 0.4381 30 1 11.9386 -6.2078 0.4098 31 1 11.1020 -6.8236 1.8566 32 1 11.6195 -9.1414 1.1937 33 1 13.1181 -8.1858 1.2931 34 1 10.7335 -9.6799 -1.0037 35 1 11.6137 -9.1003 -2.4384 36 1 9.5418 -7.7720 -2.0131 37 1 11.0106 -6.7718 -1.8918 38 1 10.9428 -4.5407 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286319517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:41 Heat of formation + Delta-G solvation = -62.596956 kcal Electronic energy + Delta-G solvation = -22139.529940 eV Core-core repulsion = 18620.085872 eV Total energy + Delta-G solvation = -3519.444067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72546 -41.00084 -39.67406 -36.43841 -34.75543 -34.67308 -32.07217 -31.65372 -29.86774 -27.88500 -26.98943 -25.03098 -24.42525 -22.79430 -21.94065 -20.49188 -19.71638 -19.38319 -17.93818 -17.82777 -17.22201 -17.15709 -17.09516 -16.90398 -16.02235 -15.84400 -15.69197 -15.49482 -15.31710 -14.88315 -14.66252 -14.43072 -13.94332 -13.88530 -13.36492 -13.28223 -13.02965 -12.92521 -12.73173 -12.34572 -12.19487 -12.04127 -11.88595 -11.58257 -11.26884 -11.17710 -11.16175 -10.83931 -10.59478 -10.52085 -10.25605 -9.32015 -9.01921 -8.51961 -6.23968 -0.33079 0.10519 0.79396 0.91055 1.07587 1.32249 1.35175 1.49462 1.76974 1.84610 2.23680 2.61635 2.86589 2.98054 3.22194 3.55061 3.80872 3.88290 4.05785 4.10840 4.11799 4.28824 4.33310 4.38139 4.42784 4.58514 4.66622 4.74044 4.78441 4.82137 4.91514 5.07820 5.13968 5.20320 5.33016 5.69812 5.75546 6.12305 6.28370 6.58345 6.70395 6.92730 8.60120 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044477 B = 0.002177 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.387907 B =12859.053276 C =13211.762814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.233 1.233 7 C -0.530 4.530 8 H 0.066 0.934 9 S -0.160 6.160 10 C -0.106 4.106 11 C 0.539 3.461 12 O -0.510 6.510 13 N -0.611 5.611 14 C 0.233 3.767 15 N -0.521 5.521 16 C 0.085 3.915 17 C -0.010 4.010 18 C -0.144 4.144 19 C 0.059 3.941 20 O -0.401 6.401 21 C 0.062 3.938 22 C -0.140 4.140 23 C -0.304 4.304 24 S 0.220 5.780 25 H 0.277 0.723 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.437 0.563 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.157 -17.292 0.317 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.157 1.157 7 C -0.678 4.678 8 H 0.084 0.916 9 S 0.066 5.934 10 C -0.257 4.257 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.262 5.262 14 C -0.134 4.134 15 N -0.244 5.244 16 C -0.046 4.046 17 C -0.031 4.031 18 C -0.182 4.182 19 C -0.017 4.017 20 O -0.320 6.320 21 C -0.014 4.014 22 C -0.179 4.179 23 C -0.444 4.444 24 S 0.471 5.529 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.278 0.722 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 24.934 -14.975 0.251 29.086 hybrid contribution -1.731 -1.378 0.034 2.213 sum 23.203 -16.352 0.285 28.387 Atomic orbital electron populations 1.70010 1.07352 1.29056 1.48916 1.25564 0.95260 1.02305 0.92917 0.85890 0.80792 0.79634 0.80214 1.18721 1.18628 1.15651 1.22443 0.90092 0.96809 1.58430 0.91581 1.84710 1.06643 1.04350 1.97648 1.23175 0.92511 1.01124 1.08872 1.20437 0.91109 0.81257 0.74711 1.90661 1.58097 1.42240 1.47442 1.42660 1.02838 1.09813 1.70935 1.23543 0.91363 0.94256 1.04249 1.66141 1.11960 1.23751 1.22592 1.19984 0.86769 0.96553 1.01340 1.19765 0.94603 0.91585 0.97186 1.22278 0.95084 0.99872 1.00972 1.22717 1.00936 0.95343 0.82694 1.87917 1.31843 1.90725 1.21560 1.22667 0.86719 0.95481 0.96549 1.22188 1.00620 0.99558 0.95508 1.27435 1.06199 0.95884 1.14877 1.85262 0.93374 1.06878 1.67424 0.91369 0.85487 0.85433 0.72179 0.89673 0.90337 0.89917 0.92241 0.87189 0.92153 0.87577 0.90954 0.91223 0.78564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.97 21.65 0.30 -53.91 16 2 C 0.05 2.56 5.50 84.86 0.47 3.02 16 3 Si 0.91 43.11 27.74 68.60 1.90 45.01 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.23 -10.81 6.74 99.48 0.67 -10.14 16 7 C -0.53 -29.25 10.04 67.96 0.68 -28.57 16 8 H 0.07 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.16 -7.43 18.55 -56.49 -1.05 -8.48 16 10 C -0.11 -3.53 6.16 71.24 0.44 -3.09 16 11 C 0.54 16.68 7.81 87.66 0.68 17.36 16 12 O -0.51 -18.83 13.33 -3.05 -0.04 -18.87 16 13 N -0.61 -15.24 5.40 -313.64 -1.69 -16.93 16 14 C 0.23 6.22 8.19 179.20 1.47 7.69 16 15 N -0.52 -13.19 10.58 -189.59 -2.01 -15.20 16 16 C 0.09 1.82 5.74 41.45 0.24 2.06 16 17 C -0.01 -0.16 2.69 -11.42 -0.03 -0.19 16 18 C -0.14 -1.75 4.98 30.68 0.15 -1.60 16 19 C 0.06 0.65 6.84 72.01 0.49 1.15 16 20 O -0.40 -6.11 10.77 -148.98 -1.60 -7.71 16 21 C 0.06 0.77 6.84 72.01 0.49 1.26 16 22 C -0.14 -2.04 5.40 30.68 0.17 -1.87 16 23 C -0.30 -6.13 10.34 66.73 0.69 -5.44 16 24 S 0.22 5.68 20.22 -56.49 -1.14 4.54 16 25 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.13 3.78 8.14 -2.40 -0.02 3.76 16 27 H 0.13 3.79 8.14 -2.40 -0.02 3.78 16 28 H 0.44 8.26 8.82 -92.71 -0.82 7.44 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 0.94 6.78 -2.39 -0.02 0.92 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.20 2.87 6.89 -2.91 -0.02 2.85 16 Total: -1.00 -68.72 342.29 0.85 -67.87 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.24 Total: 11.91 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.94 Total: -8.22 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.40 Total: -86.04 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.64 Total: -26.58 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.01 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.19 Total: -3.94 kcal Total: -68.72 0.85 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286319517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.269 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds