Wall clock time and date at job start Tue Mar 31 2020 15:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.08998 * 109.50082 * 58.62072 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21717 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.46445 * 120.00022 * 180.02562 * 17 16 15 20 20 S 1.75826 * 125.45947 * 359.69517 * 19 17 16 21 21 C 1.70611 * 91.58202 * 179.97438 * 20 19 17 22 22 C 1.33773 * 110.99981 * 0.30628 * 21 20 19 23 23 C 1.36789 * 125.46014 * 180.02562 * 19 17 16 24 24 Cl 1.73599 * 123.38089 * 359.97438 * 23 19 17 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 34 34 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 35 35 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 36 36 H 1.08003 * 124.49642 * 180.09132 * 21 20 19 37 37 H 1.08002 * 122.44833 * 179.74324 * 22 21 20 38 38 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 39 39 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9023 -4.2544 1.5635 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5553 -8.1142 -0.8087 19 6 5.4263 -7.0054 -1.6324 20 16 6.4117 -5.5667 -1.8573 21 6 7.5676 -6.4415 -2.7570 22 6 7.2122 -7.7258 -2.8739 23 6 6.0284 -8.0621 -2.2585 24 17 5.3652 -9.6664 -2.2756 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4896 -6.7120 1.2383 34 1 1.6042 -6.3299 -0.2577 35 1 4.1481 -5.1103 -0.3927 36 1 8.4651 -6.0142 -3.1793 37 1 7.8106 -8.4460 -3.4122 38 1 1.0336 -4.0574 -0.8513 39 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287829845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:27 Heat of formation + Delta-G solvation = 5.058225 kcal Electronic energy + Delta-G solvation = -23098.622644 eV Core-core repulsion = 19580.068619 eV Total energy + Delta-G solvation = -3518.554025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84764 -38.28220 -37.58458 -36.22322 -34.83813 -33.04989 -30.91817 -30.45970 -29.69321 -26.06671 -25.31394 -24.58761 -22.21518 -21.57526 -20.86046 -19.73333 -19.28137 -18.55411 -16.80610 -16.50814 -15.89383 -15.47699 -15.19692 -14.82271 -14.44005 -13.92239 -13.81935 -13.64503 -13.48107 -13.43016 -13.05587 -12.81156 -12.33629 -12.22573 -12.19044 -11.67666 -11.53455 -11.30777 -11.03362 -10.97501 -10.72768 -10.53571 -10.27895 -10.20523 -10.02938 -9.91564 -9.60028 -9.45018 -9.27984 -8.93534 -8.78435 -8.48870 -6.69894 -5.81772 -3.25343 0.10553 0.91016 1.40252 1.92815 2.26562 3.07463 3.12468 3.35060 3.41617 3.41933 4.45083 4.52217 4.72963 4.82345 5.07419 5.26961 5.32273 5.41044 5.44024 5.57231 5.60376 5.65489 5.80863 5.92185 5.97477 6.21122 6.28839 6.34511 6.42564 6.56628 6.67842 6.74513 6.83728 6.93385 7.37655 7.45125 7.65140 7.75306 8.13642 8.41731 9.17804 9.81173 10.38372 11.26364 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003198 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.074547 B = 8753.087175 C =10227.818588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.074 0.926 15 C 0.129 3.871 16 N -0.718 5.718 17 C 0.583 3.417 18 O -0.516 6.516 19 C -0.264 4.264 20 S 0.256 5.744 21 C -0.227 4.227 22 C -0.145 4.145 23 C 0.014 3.986 24 Cl -0.017 7.017 25 C 0.153 3.847 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.020 0.980 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 -13.676 -2.567 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.140 4.140 14 H 0.092 0.908 15 C 0.005 3.995 16 N -0.370 5.370 17 C 0.368 3.632 18 O -0.393 6.393 19 C -0.386 4.386 20 S 0.522 5.478 21 C -0.365 4.365 22 C -0.176 4.176 23 C -0.028 4.028 24 Cl 0.012 6.988 25 C 0.026 3.974 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.038 0.962 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.749 -12.876 -2.061 18.237 hybrid contribution 0.904 -0.316 -0.646 1.155 sum 13.654 -13.192 -2.706 19.177 Atomic orbital electron populations 1.70026 1.05291 1.25661 1.53544 1.25048 0.95259 0.98411 1.00747 0.86387 0.78949 0.83405 0.78114 1.20864 1.21627 1.21006 1.19113 0.92465 0.84832 1.42165 0.91784 1.44040 1.36003 1.01353 1.49938 1.20797 0.88534 0.98298 0.88047 1.22165 1.00121 0.95940 0.99824 1.21334 0.96658 0.97785 0.97950 1.22051 0.98961 0.93479 0.99463 0.90791 1.21523 0.84174 0.98277 0.95478 1.45942 1.25194 1.10960 1.54863 1.16746 0.83055 0.84455 0.78916 1.90876 1.59315 1.29188 1.59908 1.24661 1.03581 0.98142 1.12199 1.83432 1.10753 1.07627 1.45984 1.25247 1.06077 0.98454 1.06709 1.19751 0.96667 0.97012 1.04165 1.20330 0.94802 0.88208 0.99483 1.98401 1.84882 1.18636 1.96902 1.20992 0.97479 0.86900 0.91989 0.93538 0.89589 0.96419 0.92741 0.93157 0.93380 0.92411 0.91603 0.91196 0.76582 0.80481 0.82878 0.96206 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.63 7.89 -52.48 -0.41 1.22 16 9 N -0.59 -14.23 2.99 -172.05 -0.51 -14.75 16 10 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.10 -1.59 5.16 -26.69 -0.14 -1.73 16 13 C -0.12 -1.91 2.38 -90.28 -0.22 -2.13 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 16 N -0.72 -9.85 5.33 -61.69 -0.33 -10.18 16 17 C 0.58 8.60 7.78 -12.96 -0.10 8.49 16 18 O -0.52 -9.01 15.09 5.17 0.08 -8.93 16 19 C -0.26 -3.27 6.45 -36.80 -0.24 -3.51 16 20 S 0.26 2.32 22.15 -107.50 -2.38 -0.06 16 21 C -0.23 -1.71 10.92 29.17 0.32 -1.39 16 22 C -0.14 -1.28 10.06 -41.38 -0.42 -1.69 16 23 C 0.01 0.17 6.39 -40.34 -0.26 -0.09 16 24 Cl -0.02 -0.22 27.24 -51.86 -1.41 -1.63 16 25 C 0.15 3.02 5.63 -3.48 -0.02 3.00 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 4.99 6.83 -40.82 -0.28 4.71 16 36 H 0.18 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.93 7.16 -51.93 -0.37 0.56 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -30.78 346.26 -10.41 -41.19 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.16 Total: 1.10 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.50 Total: -2.94 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.22 Total: -49.97 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.38 Total: -0.06 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.41 Total: -1.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.78 -10.41 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287829845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.253 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds