Wall clock time and date at job start Tue Mar 31 2020 15:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.08998 * 109.50082 * 58.62072 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21717 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.46445 * 120.00022 * 180.02562 * 17 16 15 20 20 S 1.75826 * 125.45947 * 359.69517 * 19 17 16 21 21 C 1.70611 * 91.58202 * 179.97438 * 20 19 17 22 22 C 1.33773 * 110.99981 * 0.30628 * 21 20 19 23 23 C 1.36789 * 125.46014 * 180.02562 * 19 17 16 24 24 Cl 1.73599 * 123.38089 * 359.97438 * 23 19 17 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 34 34 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 35 35 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 36 36 H 1.08003 * 124.49642 * 180.09132 * 21 20 19 37 37 H 1.08002 * 122.44833 * 179.74324 * 22 21 20 38 38 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 39 39 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9023 -4.2544 1.5635 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5553 -8.1142 -0.8087 19 6 5.4263 -7.0054 -1.6324 20 16 6.4117 -5.5667 -1.8573 21 6 7.5676 -6.4415 -2.7570 22 6 7.2122 -7.7258 -2.8739 23 6 6.0284 -8.0621 -2.2585 24 17 5.3652 -9.6664 -2.2756 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4896 -6.7120 1.2383 34 1 1.6042 -6.3299 -0.2577 35 1 4.1481 -5.1103 -0.3927 36 1 8.4651 -6.0142 -3.1793 37 1 7.8106 -8.4460 -3.4122 38 1 1.0336 -4.0574 -0.8513 39 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287829845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:27 Heat of formation + Delta-G solvation = -13.241835 kcal Electronic energy + Delta-G solvation = -23099.416194 eV Core-core repulsion = 19580.068619 eV Total energy + Delta-G solvation = -3519.347575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94805 -39.47931 -38.75148 -37.08310 -36.25702 -34.69099 -32.32726 -32.20085 -30.72528 -27.33716 -27.08695 -25.56987 -23.82625 -22.89082 -22.11618 -20.89485 -20.41581 -19.60149 -18.61149 -17.47880 -16.95847 -16.81743 -16.58697 -16.11741 -15.80261 -15.49030 -15.04751 -14.72935 -14.55842 -14.50026 -14.48084 -14.04718 -13.80722 -13.67708 -13.53160 -13.00749 -12.83289 -12.52318 -12.47064 -12.29480 -12.26952 -11.96987 -11.84264 -11.81976 -11.57317 -11.34710 -11.10690 -10.99369 -10.50480 -10.26769 -9.88140 -9.53241 -8.65690 -7.84516 -5.31004 -0.70068 0.12381 0.71897 1.18545 1.41716 1.49307 1.52009 1.58301 2.02245 2.07348 2.53328 3.30456 3.58183 3.69863 3.98087 3.99208 4.00720 4.06990 4.15144 4.42021 4.56608 4.60720 4.67364 4.76378 4.87754 4.89048 4.93355 4.99688 5.01882 5.11703 5.20392 5.32504 5.36537 5.45134 5.58692 5.68602 5.80130 6.36774 6.41695 7.05242 7.16993 7.88097 8.40692 9.21551 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003198 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.074547 B = 8753.087175 C =10227.818588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.101 4.101 14 H 0.079 0.921 15 C 0.139 3.861 16 N -0.715 5.715 17 C 0.582 3.418 18 O -0.552 6.552 19 C -0.304 4.304 20 S 0.282 5.718 21 C -0.202 4.202 22 C -0.156 4.156 23 C 0.010 3.990 24 Cl -0.035 7.035 25 C 0.152 3.848 26 H 0.249 0.751 27 H 0.051 0.949 28 H -0.008 1.008 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.405 0.595 36 H 0.215 0.785 37 H 0.176 0.824 38 H 0.006 0.994 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.226 -13.945 -2.526 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.015 3.985 16 N -0.366 5.366 17 C 0.369 3.631 18 O -0.432 6.432 19 C -0.426 4.426 20 S 0.548 5.452 21 C -0.340 4.340 22 C -0.186 4.186 23 C -0.034 4.034 24 Cl -0.006 7.006 25 C 0.026 3.974 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.232 0.768 37 H 0.193 0.807 38 H 0.024 0.976 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.497 -13.153 -2.018 20.426 hybrid contribution 0.116 -0.222 -0.729 0.770 sum 15.613 -13.376 -2.747 20.741 Atomic orbital electron populations 1.70196 1.06831 1.25843 1.55430 1.25821 0.95960 1.01595 1.01271 0.85362 0.77563 0.79177 0.78483 1.19839 1.22491 1.20248 1.19531 0.93002 0.85858 1.40944 0.90979 1.44314 1.35968 1.02281 1.50617 1.20632 0.87648 0.97773 0.89236 1.21992 1.00981 0.95873 0.98000 1.21332 0.96430 0.96858 0.98857 1.21813 0.99243 0.93255 0.97843 0.90312 1.21342 0.84369 0.97125 0.95648 1.45881 1.24902 1.11201 1.54664 1.17063 0.83628 0.83913 0.78542 1.90845 1.60653 1.30328 1.61373 1.24552 1.03820 1.00221 1.13967 1.83351 1.10183 1.05966 1.45682 1.25722 1.06203 0.97613 1.04453 1.19949 0.95983 0.98147 1.04539 1.20696 0.95690 0.87349 0.99677 1.98391 1.85309 1.19910 1.96956 1.21114 0.97075 0.85872 0.93351 0.94235 0.93025 0.99030 0.92733 0.91269 0.90070 0.92646 0.90482 0.92138 0.75850 0.76782 0.80650 0.97614 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 11.20 21.65 0.24 -54.75 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 3 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.26 -13.94 9.58 84.03 0.81 -13.13 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -29.55 2.99 -698.24 -2.09 -31.63 16 10 C 0.17 8.20 5.30 86.36 0.46 8.66 16 11 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 12 C -0.10 -2.92 5.16 30.62 0.16 -2.76 16 13 C -0.10 -3.09 2.38 -10.57 -0.03 -3.12 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.14 3.82 5.06 86.38 0.44 4.26 16 16 N -0.71 -18.87 5.33 -467.31 -2.49 -21.36 16 17 C 0.58 16.86 7.78 86.38 0.67 17.53 16 18 O -0.55 -19.37 15.09 -4.40 -0.07 -19.44 16 19 C -0.30 -7.19 6.45 24.07 0.16 -7.04 16 20 S 0.28 4.41 22.15 -56.49 -1.25 3.16 16 21 C -0.20 -2.28 10.92 66.80 0.73 -1.55 16 22 C -0.16 -2.33 10.06 21.10 0.21 -2.12 16 23 C 0.01 0.22 6.39 21.78 0.14 0.36 16 24 Cl -0.03 -0.86 27.24 -2.72 -0.07 -0.94 16 25 C 0.15 5.93 5.63 86.51 0.49 6.42 16 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 28 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.56 6.83 -92.71 -0.63 8.93 16 36 H 0.22 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.06 2.08 7.16 -2.39 -0.02 2.06 16 Total: -1.00 -68.64 346.26 1.58 -67.06 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.44 Total: 11.65 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.83 Total: 0.69 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.33 Total: -107.74 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.07 Total: -19.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.25 Total: 3.16 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.94 kcal Total: -68.64 1.58 -67.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287829845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.823 kcal (2) G-P(sol) polarization free energy of solvation -68.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds