Wall clock time and date at job start Tue Mar 31 2020 15:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1 6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1 7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99798 * 163.06774 * 7 2 1 9 9 N 1.36938 * 119.99984 * 343.07216 * 7 2 1 10 10 C 1.46920 * 120.62889 * 151.82550 * 9 7 2 11 11 C 1.53196 * 108.76394 * 126.40909 * 10 9 7 12 12 C 1.53040 * 109.31563 * 54.65246 * 11 10 9 13 13 C 1.53039 * 109.52506 * 298.61565 * 12 11 10 14 14 H 1.08998 * 109.50131 * 301.41807 * 13 12 11 15 15 C 1.53002 * 109.49832 * 181.35246 * 13 12 11 16 16 N 1.46497 * 109.47419 * 175.00067 * 15 13 12 17 17 C 1.34777 * 120.00106 * 179.97438 * 16 15 13 18 18 O 1.21714 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.46439 * 120.00135 * 179.97438 * 17 16 15 20 20 S 1.75838 * 125.45843 * 0.03141 * 19 17 16 21 21 C 1.70612 * 91.58227 * 179.97438 * 20 19 17 22 22 C 1.33771 * 111.00179 * 359.97438 * 21 20 19 23 23 C 1.36784 * 125.46707 * 179.72004 * 19 17 16 24 24 Cl 1.73604 * 123.37409 * 359.97438 * 23 19 17 25 25 C 1.46930 * 120.62807 * 331.85188 * 9 7 2 26 26 H 0.97004 * 120.00436 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58462 * 246.19916 * 10 9 7 28 28 H 1.08994 * 109.58745 * 6.48452 * 10 9 7 29 29 H 1.08997 * 109.50496 * 294.69619 * 11 10 9 30 30 H 1.08997 * 109.48868 * 174.60111 * 11 10 9 31 31 H 1.08994 * 109.46339 * 178.60533 * 12 11 10 32 32 H 1.08996 * 109.45832 * 58.62986 * 12 11 10 33 33 H 1.08998 * 109.47334 * 295.00146 * 15 13 12 34 34 H 1.09002 * 109.46817 * 55.00139 * 15 13 12 35 35 H 0.97002 * 119.99676 * 0.02562 * 16 15 13 36 36 H 1.08001 * 124.49510 * 179.97438 * 21 20 19 37 37 H 1.07997 * 122.45331 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.58993 * 113.80281 * 25 9 7 39 39 H 1.09000 * 109.70599 * 353.43601 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 1.8139 -3.6528 -0.1976 11 6 2.0676 -4.6169 0.9656 12 6 0.8121 -4.7005 1.8367 13 6 0.4975 -3.3188 2.4147 14 1 1.3472 -2.9672 2.9999 15 6 -0.7381 -3.4100 3.3124 16 7 -0.9686 -2.1158 3.9590 17 6 -2.0098 -1.9586 4.8002 18 8 -2.7583 -2.8921 5.0231 19 6 -2.2398 -0.6651 5.4470 20 16 -1.2528 0.7738 5.2298 21 6 -2.2375 1.6681 6.2982 22 6 -3.2358 0.9153 6.7738 23 6 -3.2604 -0.3807 6.3122 24 17 -4.4642 -1.5396 6.7829 25 6 0.2260 -2.3398 1.2680 26 1 -0.4851 0.8400 0.0004 27 1 1.0403 -4.0606 -0.8483 28 1 2.7333 -3.5130 -0.7662 29 1 2.9023 -4.2529 1.5646 30 1 2.3047 -5.6058 0.5733 31 1 0.9814 -5.4048 2.6512 32 1 -0.0280 -5.0407 1.2312 33 1 -1.6067 -3.6746 2.7093 34 1 -0.5783 -4.1733 4.0740 35 1 -0.3722 -1.3717 3.7810 36 1 -2.0763 2.7044 6.5561 37 1 -3.9703 1.2976 7.4671 38 1 -0.6770 -2.6405 0.7369 39 1 0.0967 -1.3345 1.6689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287829847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:29 Heat of formation + Delta-G solvation = -12.679030 kcal Electronic energy + Delta-G solvation = -23516.597166 eV Core-core repulsion = 19997.273996 eV Total energy + Delta-G solvation = -3519.323170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94554 -39.48271 -38.76144 -37.10102 -36.14828 -34.81655 -32.72793 -31.66081 -30.76989 -27.41469 -27.07531 -25.59984 -23.88185 -22.80851 -22.08081 -20.86365 -20.42915 -19.60412 -18.67784 -17.51465 -17.01691 -16.86565 -16.46671 -16.10725 -15.75801 -15.38441 -15.10289 -14.72107 -14.54184 -14.52454 -14.50396 -14.06184 -13.85583 -13.69470 -13.56538 -12.89463 -12.87776 -12.54393 -12.54024 -12.27091 -12.19363 -11.94881 -11.84703 -11.79011 -11.54929 -11.33126 -11.09387 -10.99648 -10.52996 -10.26400 -9.89266 -9.57570 -8.63937 -7.83194 -5.29619 -0.71573 0.09708 0.70674 1.16808 1.39548 1.48076 1.51728 1.61392 1.99748 2.10401 2.54357 3.29176 3.58930 3.69064 3.96883 3.99580 4.07972 4.11488 4.15597 4.36389 4.53371 4.62737 4.65257 4.80648 4.85765 4.88853 4.90773 4.98710 5.04526 5.16353 5.21430 5.33026 5.39115 5.45657 5.56934 5.69595 5.78612 6.35982 6.42547 7.03108 7.18527 7.88878 8.41879 9.22430 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.004276 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.133351 B = 6546.070717 C = 8407.624608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.098 4.098 13 C -0.113 4.113 14 H 0.072 0.928 15 C 0.139 3.861 16 N -0.715 5.715 17 C 0.581 3.419 18 O -0.551 6.551 19 C -0.302 4.302 20 S 0.263 5.737 21 C -0.201 4.201 22 C -0.153 4.153 23 C 0.012 3.988 24 Cl -0.031 7.031 25 C 0.189 3.811 26 H 0.250 0.750 27 H 0.009 0.991 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.403 0.597 36 H 0.216 0.784 37 H 0.181 0.819 38 H -0.014 1.014 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 1.042 14.518 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.136 4.136 13 C -0.133 4.133 14 H 0.090 0.910 15 C 0.016 3.984 16 N -0.365 5.365 17 C 0.368 3.632 18 O -0.432 6.432 19 C -0.423 4.423 20 S 0.530 5.470 21 C -0.339 4.339 22 C -0.183 4.183 23 C -0.032 4.032 24 Cl -0.002 7.002 25 C 0.063 3.937 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.238 0.762 36 H 0.233 0.767 37 H 0.198 0.802 38 H 0.004 0.996 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.672 0.736 13.820 13.940 hybrid contribution -1.075 0.874 0.276 1.412 sum -2.747 1.610 14.097 14.452 Atomic orbital electron populations 1.70197 1.06471 1.25762 1.55177 1.25705 0.95914 1.01089 1.01093 0.85362 0.78626 0.80306 0.77119 1.19456 1.22455 1.20514 1.19524 0.92785 0.86003 1.41209 0.91846 1.44328 1.36039 1.02413 1.50651 1.21117 0.97004 0.86361 0.94513 1.21866 0.97511 0.99324 0.97298 1.21354 0.98014 0.94924 0.99353 1.21933 0.96285 0.98407 0.96702 0.90984 1.21352 0.97726 0.84130 0.95230 1.45929 1.29530 1.15480 1.45583 1.17065 0.80854 0.86431 0.78875 1.90819 1.46829 1.41658 1.63879 1.24542 1.06042 1.00757 1.10959 1.83662 1.25967 0.97384 1.40022 1.25717 0.99384 1.06964 1.01863 1.19962 1.02658 0.90400 1.05247 1.20684 0.92075 0.92832 0.97609 1.98383 1.53122 1.58497 1.90199 1.20581 0.87288 0.97539 0.88328 0.94042 0.97342 0.93015 0.92354 0.89874 0.90066 0.92704 0.92800 0.90276 0.76181 0.76702 0.80201 0.99592 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.45 11.19 21.65 0.24 -52.21 16 2 C -0.04 -2.24 4.92 84.86 0.42 -1.82 16 3 Si 0.96 42.33 29.59 68.60 2.03 44.36 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.27 -14.07 9.58 84.03 0.81 -13.27 16 8 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 9 N -0.61 -29.69 2.99 -699.08 -2.09 -31.78 16 10 C 0.14 5.47 6.52 86.36 0.56 6.03 16 11 C -0.12 -3.77 6.08 30.67 0.19 -3.58 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.11 -3.93 2.37 -10.71 -0.03 -3.96 16 14 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.14 4.59 5.07 86.38 0.44 5.03 16 16 N -0.71 -23.94 5.33 -467.31 -2.49 -26.42 16 17 C 0.58 20.20 7.78 86.38 0.67 20.87 16 18 O -0.55 -21.80 15.09 -4.39 -0.07 -21.86 16 19 C -0.30 -8.84 6.45 24.07 0.16 -8.69 16 20 S 0.26 5.96 22.15 -56.49 -1.25 4.71 16 21 C -0.20 -3.26 10.92 66.80 0.73 -2.53 16 22 C -0.15 -2.87 10.06 21.10 0.21 -2.66 16 23 C 0.01 0.32 6.39 21.78 0.14 0.46 16 24 Cl -0.03 -0.86 27.24 -2.72 -0.07 -0.94 16 25 C 0.19 8.61 4.39 86.36 0.38 8.99 16 26 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 35 H 0.40 13.24 6.81 -92.71 -0.63 12.61 16 36 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.06 3.18 5.27 -2.39 -0.01 3.17 16 Total: -1.00 -66.35 346.20 1.57 -64.78 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.44 Total: 17.31 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.83 Total: 2.07 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.34 Total: -110.42 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.07 Total: -21.86 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.25 Total: 4.71 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.94 kcal Total: -66.35 1.57 -64.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287829847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.096 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds