Wall clock time and date at job start Tue Mar 31 2020 15:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86796 * 120.00407 * 2 1 4 4 H 1.48502 * 109.47071 * 270.00158 * 3 2 1 5 5 H 1.48507 * 109.46938 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.47524 * 149.99785 * 3 2 1 7 7 C 1.38688 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99932 * 0.02562 * 7 2 1 9 9 O 1.34810 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.35568 * 117.00058 * 185.04808 * 9 7 2 11 11 C 1.38795 * 120.15482 * 354.39817 * 10 9 7 12 12 C 1.38061 * 120.07086 * 179.97438 * 11 10 9 13 13 C 1.38538 * 120.39467 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.31188 * 359.97438 * 13 12 11 15 15 C 1.39610 * 119.92104 * 0.02562 * 14 13 12 16 16 C 1.47580 * 120.19426 * 180.02562 * 15 14 13 17 17 N 1.32226 * 126.68803 * 0.02562 * 16 15 14 18 18 C 1.34180 * 105.54200 * 179.97438 * 17 16 15 19 19 C 1.50700 * 126.18363 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47164 * 89.99536 * 19 18 17 21 21 C 1.53000 * 109.46914 * 180.02562 * 20 19 18 22 22 F 1.39893 * 109.47166 * 60.00570 * 21 20 19 23 23 F 1.39904 * 109.46889 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47410 * 300.00180 * 21 20 19 25 25 N 1.30052 * 107.63825 * 359.97438 * 18 17 16 26 26 O 1.21287 * 110.51119 * 359.73367 * 25 18 17 27 27 H 0.97001 * 119.99853 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.96014 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80224 * 180.27760 * 12 11 10 30 30 H 1.07998 * 119.84564 * 179.97438 * 13 12 11 31 31 H 1.08005 * 120.04222 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47091 * 209.99800 * 19 18 17 33 33 H 1.09000 * 109.46793 * 329.99610 * 19 18 17 34 34 H 1.08996 * 109.47332 * 300.00116 * 20 19 18 35 35 H 1.09000 * 109.47204 * 60.00326 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0088 -1.2011 0.0005 8 1 1.4688 -2.1363 0.0005 9 8 3.3568 -1.2011 0.0000 10 6 3.9723 -2.4044 -0.1057 11 6 3.2246 -3.5736 -0.0903 12 6 3.8531 -4.7981 -0.1986 13 6 5.2311 -4.8702 -0.3227 14 6 5.9893 -3.7189 -0.3398 15 6 5.3674 -2.4737 -0.2311 16 6 6.1732 -1.2374 -0.2493 17 7 7.4879 -1.1529 -0.3626 18 6 7.7678 0.1590 -0.3313 19 6 9.1381 0.7788 -0.4272 20 6 9.4736 1.0500 -1.8951 21 6 10.8651 1.6787 -1.9923 22 9 11.8118 0.8019 -1.4520 23 9 11.1717 1.9273 -3.3346 24 9 10.8839 2.8824 -1.2795 25 7 6.6429 0.7991 -0.2045 26 8 5.7137 0.0208 -0.1608 27 1 -0.4850 0.8401 0.0004 28 1 2.1500 -3.5255 0.0065 29 1 3.2667 -5.7050 -0.1907 30 1 5.7135 -5.8328 -0.4064 31 1 7.0633 -3.7801 -0.4363 32 1 9.1523 1.7166 0.1281 33 1 9.8760 0.0960 -0.0060 34 1 9.4594 0.1122 -2.4503 35 1 8.7358 1.7329 -2.3162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290137121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:00 Heat of formation + Delta-G solvation = -93.413769 kcal Electronic energy + Delta-G solvation = -27102.572581 eV Core-core repulsion = 22461.738634 eV Total energy + Delta-G solvation = -4640.833947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.36594 -47.86187 -47.83566 -45.04324 -39.51310 -36.94161 -36.26803 -34.13595 -32.74624 -32.27574 -29.98254 -29.35753 -27.25586 -25.59354 -24.20478 -23.33616 -22.26571 -21.62070 -20.63471 -18.81800 -18.73042 -18.17703 -17.98042 -17.76040 -17.30650 -16.72052 -15.85936 -15.09545 -15.00560 -14.78645 -14.50525 -14.29193 -14.23013 -14.15667 -14.03500 -13.95284 -13.93038 -13.83739 -13.36665 -13.16164 -12.68934 -12.38310 -12.21125 -11.98584 -11.92621 -11.69078 -11.32403 -11.19412 -10.99873 -10.92958 -10.62798 -10.29880 -10.08471 -9.70628 -9.09087 -8.35943 -7.66129 -6.67479 -4.33279 0.94094 1.96239 1.99800 2.45545 2.71792 3.11680 3.20106 3.27220 3.39940 3.40068 3.70100 3.77468 3.95134 4.10333 4.21955 4.24245 4.42787 4.59638 4.70135 4.86930 4.99013 5.19490 5.38175 5.43848 5.45324 5.60395 5.73346 5.91284 6.03112 6.20062 6.26601 6.39629 6.74657 6.84039 6.97433 7.27696 7.48223 7.73068 8.53834 8.65074 9.19995 10.37218 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003581 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.777340 B = 7818.228249 C = 9600.976500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.074 3.926 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.393 4.393 8 H 0.114 0.886 9 O -0.186 6.186 10 C 0.187 3.813 11 C -0.220 4.220 12 C -0.044 4.044 13 C -0.214 4.214 14 C -0.012 4.012 15 C -0.134 4.134 16 C 0.267 3.733 17 N -0.503 5.503 18 C 0.161 3.839 19 C -0.024 4.024 20 C -0.163 4.163 21 C 0.457 3.543 22 F -0.181 7.181 23 F -0.183 7.183 24 F -0.182 7.182 25 N -0.395 5.395 26 O 0.099 5.901 27 H 0.285 0.715 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.016 -1.891 -2.530 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.167 1.167 7 C -0.467 4.467 8 H 0.131 0.869 9 O -0.086 6.086 10 C 0.130 3.870 11 C -0.239 4.239 12 C -0.063 4.063 13 C -0.233 4.233 14 C -0.032 4.032 15 C -0.139 4.139 16 C 0.054 3.946 17 N -0.239 5.239 18 C -0.113 4.113 19 C -0.062 4.062 20 C -0.203 4.203 21 C 0.403 3.597 22 F -0.163 7.163 23 F -0.164 7.164 24 F -0.164 7.164 25 N -0.104 5.104 26 O 0.040 5.960 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.264 -0.715 -2.496 16.470 hybrid contribution 0.087 0.682 -0.037 0.688 sum 16.351 -0.033 -2.533 16.547 Atomic orbital electron populations 1.69618 1.05743 1.29264 1.44831 1.24502 0.95019 0.99180 0.94615 0.86304 0.81130 0.80904 0.79774 1.19531 1.20521 1.16747 1.20881 0.76223 0.97058 1.52562 0.86881 1.83576 1.23302 1.25497 1.76256 1.19034 0.89955 0.86203 0.91854 1.21230 1.01498 0.91225 1.09971 1.21076 0.94431 0.96971 0.93817 1.20624 0.93888 0.97427 1.11377 1.20726 0.99488 0.89565 0.93446 1.16310 0.88495 0.87238 1.21859 1.26170 0.87873 0.87559 0.92962 1.72060 1.10622 1.16701 1.24554 1.25109 0.96404 0.87177 1.02588 1.19717 0.89293 1.02212 0.95014 1.22859 0.91966 1.05086 1.00357 1.20428 0.89017 0.76693 0.73537 1.93196 1.68126 1.68952 1.86015 1.93200 1.94376 1.94484 1.34381 1.93200 1.97016 1.47606 1.78559 1.74601 0.96527 1.17551 1.21753 1.85608 1.30770 1.14355 1.65306 0.90469 0.83942 0.86310 0.86253 0.85223 0.88015 0.87486 0.86391 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.22 13.96 55.48 0.77 -22.45 16 2 C 0.07 1.94 5.49 -17.51 -0.10 1.84 16 3 Si 0.89 21.00 28.62 -169.99 -4.86 16.14 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.24 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.13 9.95 30.90 0.31 -9.82 16 8 H 0.11 2.91 5.44 -52.49 -0.29 2.62 16 9 O -0.19 -4.51 7.04 -17.80 -0.13 -4.63 16 10 C 0.19 3.94 6.66 -38.62 -0.26 3.68 16 11 C -0.22 -4.11 9.16 -39.44 -0.36 -4.47 16 12 C -0.04 -0.66 10.03 -39.54 -0.40 -1.06 16 13 C -0.21 -3.04 10.03 -39.60 -0.40 -3.44 16 14 C -0.01 -0.20 9.70 -39.20 -0.38 -0.58 16 15 C -0.13 -2.56 5.89 -104.82 -0.62 -3.17 16 16 C 0.27 5.23 7.96 -13.90 -0.11 5.12 16 17 N -0.50 -8.82 11.26 -10.17 -0.11 -8.93 16 18 C 0.16 2.61 7.45 -156.57 -1.17 1.45 16 19 C -0.02 -0.27 5.60 -27.88 -0.16 -0.42 16 20 C -0.16 -1.57 5.24 -26.73 -0.14 -1.71 16 21 C 0.46 4.40 3.16 37.16 0.12 4.51 16 22 F -0.18 -1.82 16.80 2.25 0.04 -1.78 16 23 F -0.18 -1.88 17.32 2.25 0.04 -1.84 16 24 F -0.18 -1.89 16.80 2.25 0.04 -1.85 16 25 N -0.39 -7.65 12.15 31.22 0.38 -7.28 16 26 O 0.10 2.12 10.01 -1.92 -0.02 2.10 16 27 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.14 2.74 5.64 -52.48 -0.30 2.45 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.81 7.88 -52.48 -0.41 1.40 16 32 H 0.10 1.06 7.80 -51.93 -0.41 0.65 16 33 H 0.11 1.06 7.80 -51.93 -0.41 0.66 16 34 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -27.99 326.85 -5.22 -33.20 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -2.63 Total: 0.48 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.65 Total: -8.08 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.04 Total: -38.66 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: -0.14 Total: -2.54 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.99 -5.22 -33.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290137121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.213 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds