Wall clock time and date at job start Tue Mar 31 2020 15:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86796 * 120.00407 * 2 1 4 4 H 1.48502 * 109.47071 * 270.00158 * 3 2 1 5 5 H 1.48507 * 109.46938 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.47524 * 149.99785 * 3 2 1 7 7 C 1.38688 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99932 * 0.02562 * 7 2 1 9 9 O 1.34810 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.35568 * 117.00058 * 185.04808 * 9 7 2 11 11 C 1.38795 * 120.15482 * 354.39817 * 10 9 7 12 12 C 1.38061 * 120.07086 * 179.97438 * 11 10 9 13 13 C 1.38538 * 120.39467 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.31188 * 359.97438 * 13 12 11 15 15 C 1.39610 * 119.92104 * 0.02562 * 14 13 12 16 16 C 1.47580 * 120.19426 * 180.02562 * 15 14 13 17 17 N 1.32226 * 126.68803 * 0.02562 * 16 15 14 18 18 C 1.34180 * 105.54200 * 179.97438 * 17 16 15 19 19 C 1.50700 * 126.18363 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47164 * 89.99536 * 19 18 17 21 21 C 1.53000 * 109.46914 * 180.02562 * 20 19 18 22 22 F 1.39893 * 109.47166 * 60.00570 * 21 20 19 23 23 F 1.39904 * 109.46889 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47410 * 300.00180 * 21 20 19 25 25 N 1.30052 * 107.63825 * 359.97438 * 18 17 16 26 26 O 1.21287 * 110.51119 * 359.73367 * 25 18 17 27 27 H 0.97001 * 119.99853 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.96014 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80224 * 180.27760 * 12 11 10 30 30 H 1.07998 * 119.84564 * 179.97438 * 13 12 11 31 31 H 1.08005 * 120.04222 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47091 * 209.99800 * 19 18 17 33 33 H 1.09000 * 109.46793 * 329.99610 * 19 18 17 34 34 H 1.08996 * 109.47332 * 300.00116 * 20 19 18 35 35 H 1.09000 * 109.47204 * 60.00326 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0088 -1.2011 0.0005 8 1 1.4688 -2.1363 0.0005 9 8 3.3568 -1.2011 0.0000 10 6 3.9723 -2.4044 -0.1057 11 6 3.2246 -3.5736 -0.0903 12 6 3.8531 -4.7981 -0.1986 13 6 5.2311 -4.8702 -0.3227 14 6 5.9893 -3.7189 -0.3398 15 6 5.3674 -2.4737 -0.2311 16 6 6.1732 -1.2374 -0.2493 17 7 7.4879 -1.1529 -0.3626 18 6 7.7678 0.1590 -0.3313 19 6 9.1381 0.7788 -0.4272 20 6 9.4736 1.0500 -1.8951 21 6 10.8651 1.6787 -1.9923 22 9 11.8118 0.8019 -1.4520 23 9 11.1717 1.9273 -3.3346 24 9 10.8839 2.8824 -1.2795 25 7 6.6429 0.7991 -0.2045 26 8 5.7137 0.0208 -0.1608 27 1 -0.4850 0.8401 0.0004 28 1 2.1500 -3.5255 0.0065 29 1 3.2667 -5.7050 -0.1907 30 1 5.7135 -5.8328 -0.4064 31 1 7.0633 -3.7801 -0.4363 32 1 9.1523 1.7166 0.1281 33 1 9.8760 0.0960 -0.0060 34 1 9.4594 0.1122 -2.4503 35 1 8.7358 1.7329 -2.3162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290137121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:00 Heat of formation + Delta-G solvation = -109.480931 kcal Electronic energy + Delta-G solvation = -27103.269306 eV Core-core repulsion = 22461.738634 eV Total energy + Delta-G solvation = -4641.530672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.15108 -48.65297 -48.61876 -46.48058 -41.05788 -38.45548 -37.51021 -35.34267 -34.56857 -33.58857 -31.37128 -30.81673 -28.25091 -27.38038 -25.61594 -24.43631 -23.39373 -23.13244 -21.94446 -19.94918 -19.68455 -19.59616 -19.24222 -19.12792 -18.34107 -18.15773 -17.20278 -16.64517 -16.07307 -15.91756 -15.84257 -15.57413 -15.47731 -15.20236 -15.10857 -15.01105 -14.79030 -14.74554 -14.63244 -14.38985 -14.12416 -14.11458 -13.56248 -13.44868 -12.86573 -12.81591 -12.78055 -12.55910 -12.46051 -12.39887 -12.06667 -12.04699 -11.48123 -11.43551 -10.98593 -9.74542 -9.18260 -8.58879 -6.28896 -0.50769 0.58450 0.62131 1.26462 1.28242 1.30108 1.51991 1.67692 1.80439 2.22521 2.39138 2.70551 2.78294 2.83541 2.91038 3.01268 3.05146 3.09271 3.71826 3.79094 3.96232 4.06329 4.16798 4.28384 4.45949 4.47309 4.55580 4.63171 4.71831 4.82730 4.84825 5.06288 5.29370 5.49301 5.57245 5.68591 5.80481 6.08245 6.75914 7.07392 7.44439 8.50889 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003581 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.777340 B = 7818.228249 C = 9600.976500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.396 4.396 8 H 0.100 0.900 9 O -0.222 6.222 10 C 0.160 3.840 11 C -0.239 4.239 12 C -0.031 4.031 13 C -0.182 4.182 14 C -0.012 4.012 15 C -0.139 4.139 16 C 0.255 3.745 17 N -0.493 5.493 18 C 0.179 3.821 19 C -0.024 4.024 20 C -0.157 4.157 21 C 0.466 3.534 22 F -0.181 7.181 23 F -0.186 7.186 24 F -0.186 7.186 25 N -0.420 5.420 26 O 0.059 5.941 27 H 0.287 0.713 28 H 0.127 0.873 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.356 -4.145 -2.915 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.472 4.472 8 H 0.118 0.882 9 O -0.126 6.126 10 C 0.107 3.893 11 C -0.258 4.258 12 C -0.049 4.049 13 C -0.200 4.200 14 C -0.031 4.031 15 C -0.143 4.143 16 C 0.041 3.959 17 N -0.229 5.229 18 C -0.095 4.095 19 C -0.062 4.062 20 C -0.196 4.196 21 C 0.412 3.588 22 F -0.163 7.163 23 F -0.167 7.167 24 F -0.168 7.168 25 N -0.135 5.135 26 O 0.007 5.993 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.612 -3.019 -2.881 20.051 hybrid contribution -0.541 1.013 0.046 1.149 sum 19.072 -2.005 -2.835 19.385 Atomic orbital electron populations 1.69669 1.06503 1.29686 1.48658 1.24998 0.95554 1.01226 0.95288 0.85604 0.79555 0.78951 0.79276 1.19831 1.19314 1.18240 1.20811 0.77409 0.96557 1.52446 0.88240 1.83563 1.21984 1.27061 1.79974 1.19594 0.91111 0.86250 0.92383 1.21333 1.01012 0.92264 1.11151 1.21554 0.95459 0.96746 0.91162 1.21246 0.93232 0.98880 1.06642 1.21149 1.00963 0.88553 0.92480 1.16752 0.87786 0.88561 1.21241 1.26515 0.88723 0.87491 0.93147 1.72089 1.09384 1.17320 1.24133 1.25929 0.97418 0.86685 0.99471 1.19981 0.86783 1.02923 0.96555 1.22786 0.92008 1.05670 0.99172 1.20281 0.88766 0.76441 0.73297 1.93199 1.68177 1.68922 1.85996 1.93198 1.94371 1.94494 1.34639 1.93199 1.97021 1.47917 1.78635 1.74619 0.97177 1.17957 1.23707 1.85597 1.32059 1.15184 1.66415 0.90341 0.85546 0.82313 0.81305 0.82670 0.86897 0.85471 0.85445 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.71 13.96 21.62 0.30 -51.41 16 2 C 0.03 1.70 5.49 84.84 0.47 2.17 16 3 Si 0.94 45.68 28.62 68.60 1.96 47.64 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.40 -21.74 9.95 67.93 0.68 -21.06 16 8 H 0.10 5.50 5.44 -2.91 -0.02 5.49 16 9 O -0.22 -11.30 7.04 -2.88 -0.02 -11.32 16 10 C 0.16 6.85 6.66 22.89 0.15 7.00 16 11 C -0.24 -8.83 9.16 22.36 0.20 -8.62 16 12 C -0.03 -0.80 10.03 22.30 0.22 -0.58 16 13 C -0.18 -4.13 10.03 22.25 0.22 -3.91 16 14 C -0.01 -0.33 9.70 22.51 0.22 -0.11 16 15 C -0.14 -5.13 5.89 -19.99 -0.12 -5.25 16 16 C 0.25 9.84 7.96 87.22 0.69 10.54 16 17 N -0.49 -16.30 11.26 -302.62 -3.41 -19.71 16 18 C 0.18 5.53 7.45 138.53 1.03 6.56 16 19 C -0.02 -0.48 5.60 29.85 0.17 -0.31 16 20 C -0.16 -2.63 5.24 30.59 0.16 -2.47 16 21 C 0.47 7.82 3.16 71.98 0.23 8.05 16 22 F -0.18 -3.13 16.80 44.97 0.76 -2.38 16 23 F -0.19 -3.41 17.32 44.97 0.78 -2.63 16 24 F -0.19 -3.46 16.80 44.97 0.76 -2.70 16 25 N -0.42 -16.24 12.15 -58.46 -0.71 -16.95 16 26 O 0.06 2.61 10.01 86.89 0.87 3.48 16 27 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.13 5.08 5.64 -2.91 -0.02 5.06 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.16 3.54 7.88 -2.91 -0.02 3.51 16 32 H 0.11 2.07 7.80 -2.39 -0.02 2.05 16 33 H 0.13 2.07 7.80 -2.39 -0.02 2.06 16 34 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.18 326.85 6.79 -58.40 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.17 Total: 5.59 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 4.33 Total: -8.00 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.82 Total: -88.07 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.85 Total: -7.85 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 2.29 Total: -7.71 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.96 Total: 47.64 kcal Total: -65.18 6.79 -58.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290137121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.085 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds