Wall clock time and date at job start Tue Mar 31 2020 15:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48495 * 109.47237 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.47294 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.46779 * 150.00100 * 3 2 1 7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.30969 * 126.43585 * 90.00164 * 11 10 9 13 13 C 1.35234 * 105.58296 * 180.02562 * 12 11 10 14 14 C 1.48347 * 126.42077 * 179.97438 * 13 12 11 15 15 C 1.39396 * 120.06462 * 179.97438 * 14 13 12 16 16 C 1.37874 * 119.93593 * 179.97438 * 15 14 13 17 17 C 1.38857 * 120.06262 * 0.25804 * 16 15 14 18 18 O 1.35836 * 119.93794 * 179.73842 * 17 16 15 19 19 C 1.42895 * 117.00070 * 179.97438 * 18 17 16 20 20 F 1.39906 * 109.47095 * 60.01001 * 19 18 17 21 21 F 1.39902 * 109.47228 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47635 * 300.00795 * 19 18 17 23 23 C 1.38874 * 120.12862 * 359.48839 * 17 16 15 24 24 C 1.37866 * 120.06055 * 0.50948 * 23 17 16 25 25 N 1.30800 * 107.16163 * 0.22244 * 13 12 11 26 26 O 1.21290 * 110.08945 * 359.61202 * 25 13 12 27 27 H 0.96997 * 120.00070 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46789 * 60.00213 * 9 7 2 29 29 H 1.09001 * 109.47467 * 300.00383 * 9 7 2 30 30 H 1.09006 * 109.47211 * 60.00262 * 10 9 7 31 31 H 1.09006 * 109.47456 * 300.00612 * 10 9 7 32 32 H 1.07999 * 120.03214 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.96560 * 179.97438 * 16 15 14 34 34 H 1.08000 * 119.96592 * 180.23325 * 23 17 16 35 35 H 1.08007 * 120.02840 * 179.77152 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 7 1.1032 -5.6405 -1.0552 13 6 0.4706 -6.7348 -0.5743 14 6 -0.1538 -7.8150 -1.3768 15 6 -0.7738 -8.8887 -0.7400 16 6 -1.3538 -9.8910 -1.4885 17 6 -1.3158 -9.8341 -2.8753 18 8 -1.8833 -10.8255 -3.6103 19 6 -1.8084 -10.7034 -5.0320 20 9 -0.4667 -10.6641 -5.4266 21 9 -2.4382 -11.8012 -5.6282 22 9 -2.4472 -9.5253 -5.4333 23 6 -0.7034 -8.7629 -3.5126 24 6 -0.1219 -7.7579 -2.7693 25 7 0.5078 -6.6596 0.7310 26 8 1.0939 -5.6547 1.0739 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5572 0.8896 30 1 2.8718 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 -0.8000 -8.9356 0.3387 33 1 -1.8340 -10.7233 -0.9955 34 1 -0.6787 -8.7194 -4.5914 35 1 0.3575 -6.9269 -3.2654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291143957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:05 Heat of formation + Delta-G solvation = -110.881946 kcal Electronic energy + Delta-G solvation = -26223.603605 eV Core-core repulsion = 21582.012181 eV Total energy + Delta-G solvation = -4641.591424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.83916 -48.56435 -48.42407 -45.19913 -40.63767 -38.25002 -35.60434 -34.49854 -32.69712 -31.60838 -30.87383 -29.85225 -26.60084 -25.92512 -24.46064 -23.56208 -22.67285 -21.95377 -20.73415 -20.05404 -19.54892 -19.30887 -17.82885 -17.57841 -17.02819 -16.45057 -16.13578 -15.64896 -15.49459 -15.19524 -14.90374 -14.83528 -14.80515 -14.58198 -14.53815 -14.44556 -14.11050 -13.74097 -13.62246 -13.36715 -12.94672 -12.62531 -12.48521 -12.06665 -11.67138 -11.50310 -11.33823 -11.03127 -10.84497 -10.71701 -10.22352 -10.18087 -9.51131 -9.49109 -9.32682 -8.62198 -8.48636 -6.12914 -4.17942 0.42382 0.89682 1.05293 1.58803 2.42775 2.49772 3.20434 3.26676 3.33592 3.35728 3.35907 3.38218 3.59846 3.61844 4.11552 4.24612 4.36418 4.41515 4.73883 4.92450 5.04948 5.19040 5.23863 5.54700 5.60683 5.71506 5.89831 5.91097 5.99839 6.14547 6.18328 6.28827 6.46808 6.55811 7.44294 7.50716 7.82240 8.17193 8.41802 8.87325 9.47324 10.98311 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.002168 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.165650 B =12913.744839 C =13721.402112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.030 4.030 11 C 0.222 3.778 12 N -0.489 5.489 13 C 0.201 3.799 14 C -0.024 4.024 15 C -0.050 4.050 16 C -0.124 4.124 17 C 0.114 3.886 18 O -0.310 6.310 19 C 0.603 3.397 20 F -0.164 7.164 21 F -0.132 7.132 22 F -0.163 7.163 23 C -0.192 4.192 24 C -0.033 4.033 25 N -0.387 5.387 26 O 0.075 5.925 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -22.693 -7.389 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.069 4.069 11 C 0.003 3.997 12 N -0.222 5.222 13 C -0.069 4.069 14 C -0.026 4.026 15 C -0.070 4.070 16 C -0.143 4.143 17 C 0.071 3.929 18 O -0.229 6.229 19 C 0.513 3.487 20 F -0.146 7.146 21 F -0.113 7.113 22 F -0.145 7.145 23 C -0.211 4.211 24 C -0.053 4.053 25 N -0.096 5.096 26 O 0.016 5.984 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.182 -23.398 -7.256 24.703 hybrid contribution 0.381 1.119 -0.372 1.239 sum -2.801 -22.279 -7.628 23.714 Atomic orbital electron populations 1.69963 1.06170 1.27038 1.49759 1.25014 0.94874 0.99479 0.94879 0.86502 0.79770 0.82991 0.78214 1.20536 1.21168 1.19681 1.21056 0.93169 0.90157 1.52082 0.91987 1.19169 0.93565 0.89803 0.98541 1.20815 0.98013 0.83457 1.04595 1.29604 0.93862 0.96863 0.79358 1.72020 1.16591 1.04733 1.28902 1.23704 1.00032 0.95304 0.87857 1.17397 1.00858 0.92404 0.91977 1.21049 0.93940 0.91175 1.00801 1.20281 1.03687 1.01209 0.89110 1.18850 0.95846 0.87169 0.91001 1.86395 1.75080 1.46749 1.14712 1.19353 0.74768 0.74661 0.79927 1.93318 1.34242 1.95984 1.91015 1.93312 1.82323 1.53817 1.81883 1.93323 1.82161 1.48153 1.90822 1.21471 1.03276 0.95237 1.01077 1.21073 0.94781 0.97463 0.92014 1.74800 1.15844 1.04308 1.14690 1.85264 1.51900 1.24960 1.36228 0.92703 0.95488 0.95744 0.88871 0.88039 0.83582 0.83649 0.84221 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.66 4.95 -27.88 -0.14 0.52 16 10 C -0.03 -0.54 5.78 -27.89 -0.16 -0.70 16 11 C 0.22 4.03 7.75 -12.99 -0.10 3.93 16 12 N -0.49 -8.93 11.25 -9.88 -0.11 -9.04 16 13 C 0.20 3.37 7.80 -156.10 -1.22 2.16 16 14 C -0.02 -0.33 5.88 -104.87 -0.62 -0.95 16 15 C -0.05 -0.56 9.69 -39.28 -0.38 -0.94 16 16 C -0.12 -1.19 9.97 -39.49 -0.39 -1.58 16 17 C 0.11 1.18 6.49 -39.12 -0.25 0.92 16 18 O -0.31 -2.95 10.37 -19.23 -0.20 -3.15 16 19 C 0.60 5.19 3.42 101.05 0.35 5.53 16 20 F -0.16 -1.42 15.57 2.25 0.04 -1.38 16 21 F -0.13 -1.07 17.53 2.25 0.04 -1.03 16 22 F -0.16 -1.46 15.54 2.25 0.03 -1.42 16 23 C -0.19 -2.05 8.24 -39.48 -0.33 -2.38 16 24 C -0.03 -0.41 9.69 -39.29 -0.38 -0.79 16 25 N -0.39 -6.71 11.85 30.97 0.37 -6.34 16 26 O 0.08 1.34 11.29 18.03 0.20 1.55 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.15 1.50 7.86 -52.49 -0.41 1.09 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.31 5.08 -52.49 -0.27 1.04 16 35 H 0.15 1.83 7.87 -52.48 -0.41 1.42 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -29.13 329.27 -5.73 -34.86 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.75 Total: -2.72 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.03 Total: -6.81 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.99 Total: -40.41 kcal Atomic # 8 Polarization: -1.61 SS G_CDS: 0.00 Total: -1.60 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.11 Total: -3.83 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.13 -5.73 -34.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291143957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.024 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds