Wall clock time and date at job start Tue Mar 31 2020 15:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48495 * 109.47237 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.47294 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.46779 * 150.00100 * 3 2 1 7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.30969 * 126.43585 * 90.00164 * 11 10 9 13 13 C 1.35234 * 105.58296 * 180.02562 * 12 11 10 14 14 C 1.48347 * 126.42077 * 179.97438 * 13 12 11 15 15 C 1.39396 * 120.06462 * 179.97438 * 14 13 12 16 16 C 1.37874 * 119.93593 * 179.97438 * 15 14 13 17 17 C 1.38857 * 120.06262 * 0.25804 * 16 15 14 18 18 O 1.35836 * 119.93794 * 179.73842 * 17 16 15 19 19 C 1.42895 * 117.00070 * 179.97438 * 18 17 16 20 20 F 1.39906 * 109.47095 * 60.01001 * 19 18 17 21 21 F 1.39902 * 109.47228 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47635 * 300.00795 * 19 18 17 23 23 C 1.38874 * 120.12862 * 359.48839 * 17 16 15 24 24 C 1.37866 * 120.06055 * 0.50948 * 23 17 16 25 25 N 1.30800 * 107.16163 * 0.22244 * 13 12 11 26 26 O 1.21290 * 110.08945 * 359.61202 * 25 13 12 27 27 H 0.96997 * 120.00070 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46789 * 60.00213 * 9 7 2 29 29 H 1.09001 * 109.47467 * 300.00383 * 9 7 2 30 30 H 1.09006 * 109.47211 * 60.00262 * 10 9 7 31 31 H 1.09006 * 109.47456 * 300.00612 * 10 9 7 32 32 H 1.07999 * 120.03214 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.96560 * 179.97438 * 16 15 14 34 34 H 1.08000 * 119.96592 * 180.23325 * 23 17 16 35 35 H 1.08007 * 120.02840 * 179.77152 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 7 1.1032 -5.6405 -1.0552 13 6 0.4706 -6.7348 -0.5743 14 6 -0.1538 -7.8150 -1.3768 15 6 -0.7738 -8.8887 -0.7400 16 6 -1.3538 -9.8910 -1.4885 17 6 -1.3158 -9.8341 -2.8753 18 8 -1.8833 -10.8255 -3.6103 19 6 -1.8084 -10.7034 -5.0320 20 9 -0.4667 -10.6641 -5.4266 21 9 -2.4382 -11.8012 -5.6282 22 9 -2.4472 -9.5253 -5.4333 23 6 -0.7034 -8.7629 -3.5126 24 6 -0.1219 -7.7579 -2.7693 25 7 0.5078 -6.6596 0.7310 26 8 1.0939 -5.6547 1.0739 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5572 0.8896 30 1 2.8718 -3.6044 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 -0.8000 -8.9356 0.3387 33 1 -1.8340 -10.7233 -0.9955 34 1 -0.6787 -8.7194 -4.5914 35 1 0.3575 -6.9269 -3.2654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291143957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:05 Heat of formation + Delta-G solvation = -127.927200 kcal Electronic energy + Delta-G solvation = -26224.342743 eV Core-core repulsion = 21582.012181 eV Total energy + Delta-G solvation = -4642.330562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.53214 -49.24058 -49.12711 -46.55956 -41.46586 -39.13316 -37.01240 -36.11857 -34.41902 -32.54043 -32.23338 -31.11552 -27.75383 -27.38472 -25.60914 -24.72334 -23.83944 -23.36035 -22.07478 -20.86088 -20.24748 -20.05601 -19.23060 -18.88044 -18.36329 -17.86807 -17.23040 -16.50502 -16.39044 -16.37935 -15.90844 -15.64846 -15.62771 -15.61843 -15.52989 -15.23783 -15.23670 -15.03323 -14.52841 -14.41628 -14.26946 -13.97024 -13.82164 -13.49495 -13.27218 -12.82794 -12.74618 -12.50608 -12.42082 -12.08573 -11.93356 -11.90026 -11.33945 -11.00864 -10.55765 -10.35100 -9.62667 -8.19581 -6.31322 -0.58871 0.04186 0.24233 0.31437 1.26767 1.47261 1.47727 1.58836 1.70812 1.80452 2.38839 2.44548 2.46638 2.65416 2.88172 2.88934 3.16194 3.41454 3.53975 3.87078 3.90223 4.08233 4.22370 4.37711 4.50726 4.54143 4.68960 4.77154 4.80751 4.92673 5.01391 5.10361 5.22289 5.45027 5.54402 5.61406 5.78781 6.14114 6.84753 7.04036 7.38961 8.92853 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.002168 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.165650 B =12913.744839 C =13721.402112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.033 3.967 10 C -0.015 4.015 11 C 0.217 3.783 12 N -0.504 5.504 13 C 0.205 3.795 14 C -0.055 4.055 15 C -0.044 4.044 16 C -0.114 4.114 17 C 0.119 3.881 18 O -0.308 6.308 19 C 0.607 3.393 20 F -0.163 7.163 21 F -0.127 7.127 22 F -0.164 7.164 23 C -0.192 4.192 24 C -0.038 4.038 25 N -0.396 5.396 26 O 0.067 5.933 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.002 1.002 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.152 0.848 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -23.854 -7.717 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.574 4.574 8 H 0.097 0.903 9 C -0.005 4.005 10 C -0.054 4.054 11 C -0.003 4.003 12 N -0.238 5.238 13 C -0.065 4.065 14 C -0.057 4.057 15 C -0.064 4.064 16 C -0.132 4.132 17 C 0.075 3.925 18 O -0.227 6.227 19 C 0.517 3.483 20 F -0.145 7.145 21 F -0.108 7.108 22 F -0.146 7.146 23 C -0.210 4.210 24 C -0.058 4.058 25 N -0.106 5.106 26 O 0.011 5.989 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.169 0.831 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.432 -24.568 -7.576 25.824 hybrid contribution 0.070 1.330 -0.346 1.376 sum -2.363 -23.237 -7.922 24.664 Atomic orbital electron populations 1.70114 1.08078 1.27916 1.51474 1.25996 0.95658 1.03595 0.94632 0.85385 0.78809 0.78114 0.78376 1.20022 1.21418 1.17941 1.21571 0.94206 0.90927 1.50742 0.90254 1.18957 0.94003 0.91896 0.95680 1.20568 0.96731 0.81454 1.06597 1.29489 0.94107 0.97027 0.79651 1.72017 1.17037 1.05467 1.29242 1.24236 0.99048 0.95328 0.87898 1.17568 1.02902 0.92866 0.92354 1.21162 0.93275 0.90639 1.01352 1.20558 1.02543 1.01276 0.88788 1.18990 0.95063 0.86937 0.91498 1.86399 1.74816 1.46327 1.15183 1.19284 0.74770 0.74710 0.79563 1.93324 1.34219 1.95981 1.90953 1.93329 1.82233 1.53558 1.81706 1.93325 1.82200 1.48312 1.90786 1.21559 1.02920 0.94921 1.01596 1.21038 0.95223 0.97884 0.91683 1.74771 1.16489 1.04356 1.15027 1.85242 1.52186 1.25250 1.36185 0.92799 0.98783 0.98340 0.86333 0.86598 0.82788 0.80568 0.83095 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.43 13.29 21.45 0.28 -55.14 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.54 -27.95 9.11 25.60 0.23 -27.72 16 8 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.62 4.95 29.85 0.15 1.76 16 10 C -0.01 -0.53 5.78 29.84 0.17 -0.36 16 11 C 0.22 7.93 7.75 88.35 0.68 8.61 16 12 N -0.50 -18.62 11.25 -302.47 -3.40 -22.02 16 13 C 0.20 6.91 7.80 137.26 1.07 7.98 16 14 C -0.05 -1.48 5.88 -20.03 -0.12 -1.60 16 15 C -0.04 -0.93 9.69 22.46 0.22 -0.71 16 16 C -0.11 -1.88 9.97 22.33 0.22 -1.65 16 17 C 0.12 2.18 6.49 22.57 0.15 2.32 16 18 O -0.31 -5.11 10.37 -91.71 -0.95 -6.06 16 19 C 0.61 9.25 3.42 113.37 0.39 9.63 16 20 F -0.16 -2.52 15.57 44.97 0.70 -1.82 16 21 F -0.13 -1.81 17.53 44.97 0.79 -1.02 16 22 F -0.16 -2.67 15.54 44.97 0.70 -1.97 16 23 C -0.19 -3.83 8.24 22.33 0.18 -3.65 16 24 C -0.04 -0.93 9.69 22.46 0.22 -0.71 16 25 N -0.40 -13.73 11.85 -59.08 -0.70 -14.43 16 26 O 0.07 2.42 11.29 74.60 0.84 3.27 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.12 3.69 8.14 -2.38 -0.02 3.67 16 31 H 0.12 3.87 8.14 -2.38 -0.02 3.85 16 32 H 0.15 2.94 7.86 -2.91 -0.02 2.91 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.15 2.61 5.08 -2.91 -0.01 2.60 16 35 H 0.14 3.57 7.87 -2.91 -0.02 3.54 16 Total: -1.00 -63.05 329.27 5.48 -57.57 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.17 Total: 3.27 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.03 Total: -5.68 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.82 Total: -91.59 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.11 Total: -2.79 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 2.19 Total: -4.81 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -63.05 5.48 -57.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291143957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.355 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds