Wall clock time and date at job start Tue Mar 31 2020 15:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39679 * 120.15924 * 186.92755 * 3 2 1 5 5 C 1.38417 * 119.83171 * 180.29792 * 4 3 2 6 6 N 1.40130 * 119.92734 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99844 * 324.88635 * 6 5 4 8 8 O 1.21297 * 119.99912 * 4.61132 * 7 6 5 9 9 C 1.50695 * 119.99818 * 184.60703 * 7 6 5 10 10 C 1.53002 * 109.46814 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47007 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00131 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99788 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00216 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99639 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47164 * 90.00181 * 15 13 11 17 17 H 1.48507 * 109.46860 * 209.99682 * 15 13 11 18 18 H 1.48491 * 109.47352 * 329.99741 * 15 13 11 19 19 C 1.39083 * 120.15090 * 359.97438 * 5 4 3 20 20 C 1.38034 * 120.32253 * 359.97438 * 19 5 4 21 21 C 1.38637 * 120.17047 * 0.02864 * 20 19 5 22 22 O 1.35773 * 120.07854 * 179.97438 * 21 20 19 23 23 C 1.42900 * 116.99981 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.47573 * 59.99476 * 23 22 21 25 25 F 1.39903 * 109.47431 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.47059 * 299.99474 * 23 22 21 27 27 H 1.08000 * 120.08215 * 0.27552 * 4 3 2 28 28 H 0.97001 * 120.00097 * 144.89013 * 6 5 4 29 29 H 1.09005 * 109.46988 * 299.99763 * 9 7 6 30 30 H 1.08996 * 109.47458 * 60.00673 * 9 7 6 31 31 H 1.08997 * 109.47037 * 299.99827 * 10 9 7 32 32 H 1.09002 * 109.47465 * 59.99940 * 10 9 7 33 33 H 0.97005 * 120.00324 * 180.02562 * 14 13 11 34 34 H 1.08000 * 119.83640 * 179.97438 * 19 5 4 35 35 H 1.08006 * 119.91514 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 1.1998 0.1457 5 6 4.6533 1.1934 0.1385 6 7 5.3588 2.3954 0.2840 7 6 4.8701 3.5324 -0.2497 8 8 3.7806 3.5327 -0.7829 9 6 5.6771 4.8033 -0.1838 10 6 4.8999 5.9364 -0.8568 11 6 5.7067 7.2076 -0.7904 12 1 6.6765 7.2074 -0.3153 13 6 5.2061 8.3710 -1.3353 14 7 4.0249 8.3714 -1.9134 15 14 6.2059 9.9468 -1.2523 16 1 7.0703 10.0485 -2.4555 17 1 5.2881 11.1132 -1.2022 18 1 7.0539 9.9314 -0.0334 19 6 5.3455 -0.0034 -0.0127 20 6 4.6590 -1.1923 -0.1561 21 6 3.2726 -1.2013 -0.1509 22 8 2.5992 -2.3717 -0.2926 23 6 3.3830 -3.5571 -0.4422 24 9 4.1950 -3.7247 0.6846 25 9 2.5359 -4.6627 -0.5745 26 9 4.1854 -3.4448 -1.5827 27 1 2.7327 2.1298 0.2632 28 1 6.1990 2.4090 0.7686 29 1 5.8647 5.0610 0.8586 30 1 6.6267 4.6579 -0.6987 31 1 4.7120 5.6790 -1.8991 32 1 3.9504 6.0818 -0.3416 33 1 3.6729 9.1898 -2.2971 34 1 6.4255 -0.0026 -0.0180 35 1 5.2032 -2.1179 -0.2726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291825152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:03 Heat of formation + Delta-G solvation = -176.261085 kcal Electronic energy + Delta-G solvation = -26485.607935 eV Core-core repulsion = 21841.181458 eV Total energy + Delta-G solvation = -4644.426477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.87642 -48.58604 -48.46800 -41.09636 -39.87596 -37.94716 -36.62678 -34.50514 -33.61631 -31.88038 -31.30417 -29.53627 -26.60467 -25.70280 -24.59702 -23.36472 -21.85726 -20.40797 -20.18104 -19.59925 -19.58803 -18.90573 -17.27698 -17.03570 -16.46832 -16.08253 -15.85846 -15.64682 -15.36938 -15.14845 -14.99710 -14.88176 -14.81741 -14.59523 -14.50122 -14.20645 -13.84138 -13.72532 -13.59905 -13.39136 -13.29317 -12.92565 -12.56315 -12.28233 -12.21806 -11.85348 -11.29750 -11.00173 -10.67719 -10.32971 -10.09993 -9.84803 -9.55454 -9.34642 -9.18550 -8.41365 -8.29696 -6.04172 -4.09401 0.29893 0.73590 0.99725 2.35635 2.47533 2.50887 2.92196 3.04077 3.28460 3.31260 3.35314 3.37121 3.41139 3.55822 3.60480 4.19719 4.30973 4.40624 4.65361 4.87125 5.05602 5.16044 5.31292 5.40270 5.52259 5.78945 5.92137 6.01570 6.04582 6.06920 6.58347 6.69176 7.31515 7.40204 7.63926 7.72060 7.95857 8.22701 8.38011 8.98360 9.55026 11.06609 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.002261 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.575148 B =12380.628717 C =13025.445972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.259 3.741 3 C -0.008 4.008 4 C -0.044 4.044 5 C 0.145 3.855 6 N -0.684 5.684 7 C 0.510 3.490 8 O -0.510 6.510 9 C -0.128 4.128 10 C 0.035 3.965 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.079 4.079 20 C -0.170 4.170 21 C 0.124 3.876 22 O -0.307 6.307 23 C 0.605 3.395 24 F -0.163 7.163 25 F -0.130 7.130 26 F -0.162 7.162 27 H 0.167 0.833 28 H 0.414 0.586 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.146 0.854 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -25.246 6.129 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.057 4.057 3 C -0.012 4.012 4 C -0.066 4.066 5 C 0.049 3.951 6 N -0.331 5.331 7 C 0.300 3.700 8 O -0.383 6.383 9 C -0.168 4.168 10 C -0.002 4.002 11 C -0.568 4.568 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.101 4.101 20 C -0.190 4.190 21 C 0.078 3.922 22 O -0.227 6.227 23 C 0.514 3.486 24 F -0.145 7.145 25 F -0.111 7.111 26 F -0.144 7.144 27 H 0.184 0.816 28 H 0.251 0.749 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.742 -25.088 5.615 25.855 hybrid contribution 1.602 0.527 0.122 1.691 sum 4.344 -24.561 5.738 25.594 Atomic orbital electron populations 1.81227 1.11667 1.06654 1.08061 1.25135 0.92126 0.94197 0.94256 1.15005 0.84986 0.90786 1.10453 1.21380 0.93134 0.96936 0.95177 1.17642 0.90811 0.86653 0.99953 1.44012 1.26208 1.06176 1.56692 1.21991 0.87306 0.84862 0.75798 1.90694 1.20965 1.84721 1.41937 1.21931 0.99794 0.91451 1.03590 1.18938 0.95148 0.89787 0.96334 1.21171 1.03716 0.93970 1.37991 0.92502 1.25022 0.94982 0.99097 0.95221 1.69984 1.17148 1.27970 1.37555 0.86581 0.79908 0.82995 0.78402 1.20631 1.21197 1.19856 1.20949 1.00869 0.90130 0.98119 1.21195 0.91020 1.00541 1.06198 1.18460 0.90738 0.82052 1.00973 1.86427 1.35201 1.13301 1.87722 1.19328 0.74965 0.79365 0.74906 1.93311 1.73329 1.95367 1.52489 1.93324 1.71704 1.50464 1.95635 1.93321 1.73817 1.95661 1.51590 0.81594 0.74907 0.89554 0.89538 0.95658 0.95660 0.92829 0.83619 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.33 18.54 41.84 0.78 -5.56 16 2 C 0.26 3.59 14.86 -22.48 -0.33 3.25 16 3 C -0.01 -0.09 5.75 -106.72 -0.61 -0.70 16 4 C -0.04 -0.53 8.40 -38.98 -0.33 -0.86 16 5 C 0.15 1.51 6.30 -83.68 -0.53 0.98 16 6 N -0.68 -7.23 5.34 -9.87 -0.05 -7.28 16 7 C 0.51 8.06 7.67 -10.99 -0.08 7.97 16 8 O -0.51 -10.17 13.42 5.54 0.07 -10.10 16 9 C -0.13 -2.20 5.64 -27.88 -0.16 -2.36 16 10 C 0.04 0.88 4.26 -27.88 -0.12 0.76 16 11 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 12 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.08 -0.59 9.95 -39.34 -0.39 -0.98 16 20 C -0.17 -1.34 8.24 -39.51 -0.33 -1.67 16 21 C 0.12 1.24 6.49 -38.72 -0.25 0.99 16 22 O -0.31 -3.09 9.80 -19.03 -0.19 -3.28 16 23 C 0.60 4.84 3.42 101.05 0.35 5.19 16 24 F -0.16 -1.17 15.56 2.25 0.04 -1.13 16 25 F -0.13 -1.06 17.53 2.25 0.04 -1.02 16 26 F -0.16 -1.25 15.56 2.25 0.04 -1.21 16 27 H 0.17 2.39 6.21 -52.49 -0.33 2.06 16 28 H 0.41 2.79 8.82 -40.82 -0.36 2.43 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.15 0.88 5.08 -52.48 -0.27 0.62 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -32.91 332.16 -4.36 -37.26 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -2.60 Total: -2.43 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.20 Total: -0.38 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.46 Total: -38.59 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.11 Total: -13.38 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.11 Total: -3.36 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.91 -4.36 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.997 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds