Wall clock time and date at job start Tue Mar 31 2020 15:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39679 * 120.15924 * 186.92755 * 3 2 1 5 5 C 1.38417 * 119.83171 * 180.29792 * 4 3 2 6 6 N 1.40130 * 119.92734 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99844 * 324.88635 * 6 5 4 8 8 O 1.21297 * 119.99912 * 4.61132 * 7 6 5 9 9 C 1.50695 * 119.99818 * 184.60703 * 7 6 5 10 10 C 1.53002 * 109.46814 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47007 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00131 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99788 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00216 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99639 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47164 * 90.00181 * 15 13 11 17 17 H 1.48507 * 109.46860 * 209.99682 * 15 13 11 18 18 H 1.48491 * 109.47352 * 329.99741 * 15 13 11 19 19 C 1.39083 * 120.15090 * 359.97438 * 5 4 3 20 20 C 1.38034 * 120.32253 * 359.97438 * 19 5 4 21 21 C 1.38637 * 120.17047 * 0.02864 * 20 19 5 22 22 O 1.35773 * 120.07854 * 179.97438 * 21 20 19 23 23 C 1.42900 * 116.99981 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.47573 * 59.99476 * 23 22 21 25 25 F 1.39903 * 109.47431 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.47059 * 299.99474 * 23 22 21 27 27 H 1.08000 * 120.08215 * 0.27552 * 4 3 2 28 28 H 0.97001 * 120.00097 * 144.89013 * 6 5 4 29 29 H 1.09005 * 109.46988 * 299.99763 * 9 7 6 30 30 H 1.08996 * 109.47458 * 60.00673 * 9 7 6 31 31 H 1.08997 * 109.47037 * 299.99827 * 10 9 7 32 32 H 1.09002 * 109.47465 * 59.99940 * 10 9 7 33 33 H 0.97005 * 120.00324 * 180.02562 * 14 13 11 34 34 H 1.08000 * 119.83640 * 179.97438 * 19 5 4 35 35 H 1.08006 * 119.91514 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 1.1998 0.1457 5 6 4.6533 1.1934 0.1385 6 7 5.3588 2.3954 0.2840 7 6 4.8701 3.5324 -0.2497 8 8 3.7806 3.5327 -0.7829 9 6 5.6771 4.8033 -0.1838 10 6 4.8999 5.9364 -0.8568 11 6 5.7067 7.2076 -0.7904 12 1 6.6765 7.2074 -0.3153 13 6 5.2061 8.3710 -1.3353 14 7 4.0249 8.3714 -1.9134 15 14 6.2059 9.9468 -1.2523 16 1 7.0703 10.0485 -2.4555 17 1 5.2881 11.1132 -1.2022 18 1 7.0539 9.9314 -0.0334 19 6 5.3455 -0.0034 -0.0127 20 6 4.6590 -1.1923 -0.1561 21 6 3.2726 -1.2013 -0.1509 22 8 2.5992 -2.3717 -0.2926 23 6 3.3830 -3.5571 -0.4422 24 9 4.1950 -3.7247 0.6846 25 9 2.5359 -4.6627 -0.5745 26 9 4.1854 -3.4448 -1.5827 27 1 2.7327 2.1298 0.2632 28 1 6.1990 2.4090 0.7686 29 1 5.8647 5.0610 0.8586 30 1 6.6267 4.6579 -0.6987 31 1 4.7120 5.6790 -1.8991 32 1 3.9504 6.0818 -0.3416 33 1 3.6729 9.1898 -2.2971 34 1 6.4255 -0.0026 -0.0180 35 1 5.2032 -2.1179 -0.2726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291825152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:02 Heat of formation + Delta-G solvation = -198.230558 kcal Electronic energy + Delta-G solvation = -26486.560603 eV Core-core repulsion = 21841.181458 eV Total energy + Delta-G solvation = -4645.379144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.50194 -49.21952 -49.07460 -41.97836 -40.91436 -38.90604 -37.74847 -35.62096 -35.48679 -33.05284 -32.70329 -30.56548 -27.84100 -26.95090 -25.45252 -24.51423 -23.24603 -21.41290 -21.16287 -20.49142 -20.22514 -19.73710 -18.79037 -17.93493 -17.54771 -17.34382 -16.89226 -16.47080 -16.44487 -16.27714 -15.88945 -15.69594 -15.62554 -15.50377 -15.22663 -15.09166 -15.02584 -14.75709 -14.53946 -14.41107 -14.33840 -14.23889 -14.02774 -13.61962 -13.33027 -13.21431 -12.79956 -12.63441 -12.46059 -11.86683 -11.60960 -11.31874 -11.25546 -10.78687 -10.53689 -10.28776 -9.17847 -8.15797 -6.28920 -0.53217 -0.07564 0.30240 1.39665 1.44967 1.46600 1.47628 1.57403 1.68546 1.80868 2.04569 2.45343 2.54437 2.60495 2.65675 2.92944 3.18391 3.50663 3.53293 3.89722 3.96645 4.08918 4.36057 4.49326 4.58171 4.62193 4.82723 4.99611 5.08500 5.14798 5.26730 5.54413 5.68230 5.69386 5.89529 6.20244 6.23754 6.47713 6.90854 7.22359 7.41721 8.96571 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.002261 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.575148 B =12380.628717 C =13025.445972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.273 3.727 3 C -0.028 4.028 4 C -0.056 4.056 5 C 0.129 3.871 6 N -0.656 5.656 7 C 0.514 3.486 8 O -0.563 6.563 9 C -0.116 4.116 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.080 0.920 13 C -0.008 4.008 14 N -0.939 5.939 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.253 1.253 19 C -0.043 4.043 20 C -0.163 4.163 21 C 0.132 3.868 22 O -0.323 6.323 23 C 0.611 3.389 24 F -0.154 7.154 25 F -0.131 7.131 26 F -0.157 7.157 27 H 0.135 0.865 28 H 0.437 0.563 29 H 0.114 0.886 30 H 0.115 0.885 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.261 0.739 34 H 0.193 0.807 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -26.768 7.165 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.041 4.041 3 C -0.032 4.032 4 C -0.079 4.079 5 C 0.034 3.966 6 N -0.304 5.304 7 C 0.304 3.696 8 O -0.441 6.441 9 C -0.156 4.156 10 C 0.000 4.000 11 C -0.577 4.577 12 H 0.098 0.902 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.177 1.177 19 C -0.064 4.064 20 C -0.181 4.181 21 C 0.086 3.914 22 O -0.243 6.243 23 C 0.521 3.479 24 F -0.136 7.136 25 F -0.113 7.113 26 F -0.139 7.139 27 H 0.153 0.847 28 H 0.279 0.721 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.070 0.930 34 H 0.210 0.790 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.976 -26.665 6.698 28.364 hybrid contribution 0.334 0.864 -0.191 0.946 sum 7.309 -25.801 6.507 27.594 Atomic orbital electron populations 1.81211 1.12986 1.08137 1.10081 1.25606 0.92730 0.92875 0.92934 1.14952 0.83710 0.91710 1.12876 1.21143 0.94358 0.95927 0.96446 1.17727 0.90042 0.87393 1.01416 1.43479 1.26597 1.04822 1.55514 1.21622 0.86340 0.85914 0.75698 1.90704 1.23109 1.85606 1.44639 1.21658 0.99618 0.89724 1.04570 1.18733 0.94424 0.92632 0.94209 1.21744 1.04457 0.94532 1.36946 0.90236 1.26106 0.96053 1.03436 0.94940 1.70171 1.19541 1.28922 1.39303 0.85380 0.78187 0.77764 0.79278 1.19831 1.21711 1.17691 1.21349 1.02868 0.88070 0.94096 1.21529 0.89837 1.01838 1.04934 1.18557 0.91587 0.81432 0.99872 1.86410 1.36346 1.13891 1.87646 1.19189 0.74884 0.78666 0.75182 1.93331 1.72921 1.95253 1.52056 1.93328 1.71888 1.50383 1.95661 1.93334 1.73532 1.95594 1.51391 0.84699 0.72135 0.86844 0.86676 0.99790 0.99847 0.93033 0.78968 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.12 18.54 19.00 0.35 -14.76 16 2 C 0.27 8.03 14.86 88.33 1.31 9.35 16 3 C -0.03 -0.66 5.75 -21.22 -0.12 -0.78 16 4 C -0.06 -1.38 8.40 22.66 0.19 -1.19 16 5 C 0.13 2.38 6.30 38.06 0.24 2.62 16 6 N -0.66 -12.10 5.34 -303.52 -1.62 -13.72 16 7 C 0.51 15.99 7.67 87.65 0.67 16.66 16 8 O -0.56 -23.64 13.42 -3.08 -0.04 -23.68 16 9 C -0.12 -3.86 5.64 29.85 0.17 -3.69 16 10 C 0.04 1.93 4.26 29.85 0.13 2.06 16 11 C -0.54 -28.79 9.11 25.60 0.23 -28.56 16 12 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 13 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 14 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 15 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.04 -0.44 9.95 22.42 0.22 -0.22 16 20 C -0.16 -1.90 8.24 22.32 0.18 -1.72 16 21 C 0.13 2.41 6.49 22.83 0.15 2.56 16 22 O -0.32 -6.06 9.80 -91.00 -0.89 -6.95 16 23 C 0.61 8.34 3.42 113.37 0.39 8.73 16 24 F -0.15 -1.71 15.56 44.97 0.70 -1.01 16 25 F -0.13 -1.93 17.53 44.97 0.79 -1.14 16 26 F -0.16 -1.94 15.56 44.97 0.70 -1.24 16 27 H 0.14 4.25 6.21 -2.91 -0.02 4.23 16 28 H 0.44 3.89 8.82 -92.71 -0.82 3.08 16 29 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 30 H 0.12 3.17 8.14 -2.39 -0.02 3.16 16 31 H -0.02 -0.96 8.10 -2.39 -0.02 -0.98 16 32 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 33 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 34 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.17 1.19 5.08 -2.91 -0.01 1.18 16 Total: -1.00 -78.11 332.16 6.90 -71.21 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 0.38 Total: -1.40 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.23 Total: 5.83 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -0.98 Total: -86.42 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.93 Total: -30.63 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 2.19 Total: -3.39 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -78.11 6.90 -71.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.017 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds