Wall clock time and date at job start Tue Mar 31 2020 15:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48499 * 109.46853 * 270.00175 * 3 2 1 5 5 H 1.48502 * 109.47255 * 29.99526 * 3 2 1 6 6 H 1.48495 * 109.47413 * 149.99908 * 3 2 1 7 7 C 1.37875 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99603 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46640 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47007 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99898 * 179.97438 * 11 10 9 14 14 C 1.40086 * 119.99606 * 184.59445 * 13 11 10 15 15 C 1.39303 * 119.86555 * 144.87213 * 14 13 11 16 16 C 1.37817 * 120.41264 * 179.97438 * 15 14 13 17 17 C 1.38706 * 119.96438 * 0.02562 * 16 15 14 18 18 O 1.35186 * 133.84209 * 180.02562 * 17 16 15 19 19 C 1.34216 * 108.15907 * 179.97438 * 18 17 16 20 20 C 1.50698 * 124.85425 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.47076 * 270.00363 * 20 19 18 22 22 F 1.39897 * 109.47217 * 30.00244 * 20 19 18 23 23 F 1.39897 * 109.47390 * 150.00217 * 20 19 18 24 24 N 1.29913 * 110.29162 * 0.02562 * 19 18 17 25 25 C 1.36070 * 108.81218 * 359.97438 * 24 19 18 26 26 C 1.38281 * 119.86778 * 324.87345 * 14 13 11 27 27 H 0.97000 * 119.99370 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46868 * 60.00493 * 9 7 2 29 29 H 1.08992 * 109.47500 * 299.99987 * 9 7 2 30 30 H 1.08996 * 109.47785 * 60.00080 * 10 9 7 31 31 H 1.09005 * 109.47285 * 300.00004 * 10 9 7 32 32 H 0.96994 * 120.00336 * 4.59891 * 13 11 10 33 33 H 1.08001 * 119.78964 * 0.26401 * 15 14 13 34 34 H 1.07993 * 120.01578 * 180.02562 * 16 15 14 35 35 H 1.08005 * 120.16549 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4918 -4.9672 0.0033 12 8 0.2788 -4.9672 0.0033 13 7 2.1657 -6.1344 0.0037 14 6 1.4686 -7.3456 -0.0930 15 6 2.0259 -8.4126 -0.7941 16 6 1.3502 -9.6095 -0.8958 17 6 0.1070 -9.7562 -0.2983 18 8 -0.7800 -10.7733 -0.2199 19 6 -1.8353 -10.3537 0.4955 20 6 -3.0478 -11.1903 0.8134 21 9 -4.0045 -11.0266 -0.1941 22 9 -2.6777 -12.5372 0.8907 23 9 -3.5866 -10.7838 2.0388 24 7 -1.6626 -9.1229 0.8738 25 6 -0.4609 -8.6855 0.4087 26 6 0.2301 -7.4772 0.5078 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5574 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8719 -3.6036 0.8926 31 1 2.8720 -3.6051 -0.8873 32 1 3.1333 -6.1357 0.0710 33 1 2.9955 -8.3027 -1.2567 34 1 1.7883 -10.4326 -1.4405 35 1 -0.2006 -6.6487 1.0506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292181216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:11 Heat of formation + Delta-G solvation = -140.459795 kcal Electronic energy + Delta-G solvation = -26344.036800 eV Core-core repulsion = 21701.162783 eV Total energy + Delta-G solvation = -4642.874016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.79659 -48.32290 -48.28450 -43.77998 -40.28934 -37.97694 -35.45820 -34.42761 -33.60026 -31.33151 -31.03404 -29.85037 -27.51363 -25.86938 -23.72778 -23.19600 -22.35817 -21.72647 -20.04896 -19.54538 -19.25393 -18.96939 -18.35114 -17.75894 -17.13333 -16.95264 -15.93158 -15.72532 -15.24021 -15.09401 -15.05724 -14.86617 -14.67211 -14.48837 -14.39396 -14.38306 -14.14176 -13.69765 -13.35520 -13.28784 -13.03095 -12.44300 -12.26838 -12.22942 -12.06042 -11.29877 -11.10815 -10.99390 -10.66760 -10.41140 -10.08674 -9.80194 -9.39619 -9.17742 -9.02088 -8.40925 -8.33615 -6.02921 -4.08200 0.01772 0.80990 1.07540 1.70819 2.18843 2.72627 2.81095 3.05613 3.29146 3.33961 3.35887 3.37874 3.56560 3.64720 4.04201 4.27632 4.41859 4.58481 4.66879 4.83224 5.13915 5.20419 5.32365 5.59399 5.62653 5.78284 5.85705 5.95915 6.03292 6.09006 6.56606 6.70851 6.91296 7.43486 7.65318 7.73687 7.97367 8.25036 8.40965 8.99544 9.56084 11.07898 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002234 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.561438 B =12532.784534 C =13507.440688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.508 3.492 12 O -0.508 6.508 13 N -0.683 5.683 14 C 0.155 3.845 15 C -0.094 4.094 16 C -0.079 4.079 17 C 0.013 3.987 18 O -0.188 6.188 19 C 0.140 3.860 20 C 0.585 3.415 21 F -0.151 7.151 22 F -0.155 7.155 23 F -0.140 7.140 24 N -0.398 5.398 25 C 0.032 3.968 26 C -0.053 4.053 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.414 0.586 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -25.856 -0.280 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.167 4.167 11 C 0.299 3.701 12 O -0.381 6.381 13 N -0.330 5.330 14 C 0.058 3.942 15 C -0.114 4.114 16 C -0.099 4.099 17 C -0.037 4.037 18 O -0.078 6.078 19 C -0.075 4.075 20 C 0.529 3.471 21 F -0.132 7.132 22 F -0.137 7.137 23 F -0.121 7.121 24 N -0.128 5.128 25 C -0.081 4.081 26 C -0.074 4.074 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.182 -25.308 0.071 25.335 hybrid contribution 1.145 0.379 -0.391 1.268 sum 2.327 -24.929 -0.320 25.040 Atomic orbital electron populations 1.69992 1.06078 1.26749 1.49825 1.25027 0.94837 0.99310 0.95170 0.86574 0.79751 0.83422 0.78102 1.20638 1.21179 1.19862 1.21172 0.92934 0.90859 1.51869 0.92503 1.18937 0.93135 0.89300 0.98832 1.21930 1.00874 0.90815 1.03078 1.22004 0.88926 0.85410 0.73809 1.90706 1.14366 1.86945 1.46040 1.43975 1.10879 1.03635 1.74528 1.17524 0.93196 0.86990 0.96518 1.20963 1.01152 0.91359 0.97940 1.19629 0.90006 0.98929 1.01321 1.20374 0.93693 0.86180 1.03494 1.84440 1.25208 1.38309 1.59844 1.25467 0.91449 0.92203 0.98337 1.16025 0.78964 0.76434 0.75657 1.93332 1.64552 1.95146 1.60213 1.93301 1.91294 1.33065 1.96004 1.93334 1.85961 1.90242 1.42587 1.70464 1.16216 1.07069 1.19065 1.19520 0.91299 0.96044 1.01266 1.20527 0.93605 0.95120 0.98176 0.92834 0.95677 0.95644 0.89574 0.89587 0.74940 0.83108 0.83628 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.13 -2.30 5.64 -27.88 -0.16 -2.45 16 11 C 0.51 8.65 7.67 -10.98 -0.08 8.57 16 12 O -0.51 -10.89 13.41 5.55 0.07 -10.82 16 13 N -0.68 -8.12 5.34 -9.86 -0.05 -8.17 16 14 C 0.15 1.88 6.30 -83.67 -0.53 1.35 16 15 C -0.09 -0.81 9.94 -39.34 -0.39 -1.20 16 16 C -0.08 -0.71 10.05 -39.56 -0.40 -1.10 16 17 C 0.01 0.16 7.43 -38.63 -0.29 -0.13 16 18 O -0.19 -2.27 10.73 3.45 0.04 -2.23 16 19 C 0.14 1.74 7.48 -13.09 -0.10 1.64 16 20 C 0.59 5.88 3.57 36.00 0.13 6.01 16 21 F -0.15 -1.51 17.30 2.25 0.04 -1.47 16 22 F -0.16 -1.39 17.27 2.25 0.04 -1.35 16 23 F -0.14 -1.46 17.22 2.25 0.04 -1.42 16 24 N -0.40 -5.93 11.22 -8.71 -0.10 -6.03 16 25 C 0.03 0.46 7.23 -84.72 -0.61 -0.15 16 26 C -0.05 -0.79 8.74 -39.08 -0.34 -1.13 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 3.22 8.82 -40.82 -0.36 2.86 16 33 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.16 2.81 6.21 -52.48 -0.33 2.48 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -33.80 329.20 -5.30 -39.11 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -2.76 Total: -1.62 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.30 Total: -0.98 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.59 Total: -40.26 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.11 Total: -13.05 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.12 Total: -4.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.80 -5.30 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292181216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.354 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds