Wall clock time and date at job start Tue Mar 31 2020 15:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48499 * 109.46853 * 270.00175 * 3 2 1 5 5 H 1.48502 * 109.47255 * 29.99526 * 3 2 1 6 6 H 1.48495 * 109.47413 * 149.99908 * 3 2 1 7 7 C 1.37875 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99603 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46640 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47007 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99898 * 179.97438 * 11 10 9 14 14 C 1.40086 * 119.99606 * 184.59445 * 13 11 10 15 15 C 1.39303 * 119.86555 * 144.87213 * 14 13 11 16 16 C 1.37817 * 120.41264 * 179.97438 * 15 14 13 17 17 C 1.38706 * 119.96438 * 0.02562 * 16 15 14 18 18 O 1.35186 * 133.84209 * 180.02562 * 17 16 15 19 19 C 1.34216 * 108.15907 * 179.97438 * 18 17 16 20 20 C 1.50698 * 124.85425 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.47076 * 270.00363 * 20 19 18 22 22 F 1.39897 * 109.47217 * 30.00244 * 20 19 18 23 23 F 1.39897 * 109.47390 * 150.00217 * 20 19 18 24 24 N 1.29913 * 110.29162 * 0.02562 * 19 18 17 25 25 C 1.36070 * 108.81218 * 359.97438 * 24 19 18 26 26 C 1.38281 * 119.86778 * 324.87345 * 14 13 11 27 27 H 0.97000 * 119.99370 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46868 * 60.00493 * 9 7 2 29 29 H 1.08992 * 109.47500 * 299.99987 * 9 7 2 30 30 H 1.08996 * 109.47785 * 60.00080 * 10 9 7 31 31 H 1.09005 * 109.47285 * 300.00004 * 10 9 7 32 32 H 0.96994 * 120.00336 * 4.59891 * 13 11 10 33 33 H 1.08001 * 119.78964 * 0.26401 * 15 14 13 34 34 H 1.07993 * 120.01578 * 180.02562 * 16 15 14 35 35 H 1.08005 * 120.16549 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4918 -4.9672 0.0033 12 8 0.2788 -4.9672 0.0033 13 7 2.1657 -6.1344 0.0037 14 6 1.4686 -7.3456 -0.0930 15 6 2.0259 -8.4126 -0.7941 16 6 1.3502 -9.6095 -0.8958 17 6 0.1070 -9.7562 -0.2983 18 8 -0.7800 -10.7733 -0.2199 19 6 -1.8353 -10.3537 0.4955 20 6 -3.0478 -11.1903 0.8134 21 9 -4.0045 -11.0266 -0.1941 22 9 -2.6777 -12.5372 0.8907 23 9 -3.5866 -10.7838 2.0388 24 7 -1.6626 -9.1229 0.8738 25 6 -0.4609 -8.6855 0.4087 26 6 0.2301 -7.4772 0.5078 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5574 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8719 -3.6036 0.8926 31 1 2.8720 -3.6051 -0.8873 32 1 3.1333 -6.1357 0.0710 33 1 2.9955 -8.3027 -1.2567 34 1 1.7883 -10.4326 -1.4405 35 1 -0.2006 -6.6487 1.0506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292181216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:10 Heat of formation + Delta-G solvation = -165.807696 kcal Electronic energy + Delta-G solvation = -26345.135967 eV Core-core repulsion = 21701.162783 eV Total energy + Delta-G solvation = -4643.973184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.62216 -49.12802 -49.11933 -44.72776 -41.49850 -39.07372 -36.46566 -35.64184 -35.50619 -33.11860 -31.92277 -30.99962 -28.54308 -27.58290 -24.94894 -24.13478 -23.46124 -23.17409 -21.37837 -20.48618 -20.09126 -19.86011 -19.30376 -18.95662 -18.49276 -18.07606 -17.49424 -16.88850 -16.52436 -16.40234 -15.97532 -15.89556 -15.77982 -15.48874 -15.21339 -15.20004 -15.19646 -15.04548 -14.48195 -14.22436 -14.14099 -14.06966 -13.80899 -13.29961 -13.17992 -13.03705 -12.81552 -12.47932 -12.10853 -11.91644 -11.64737 -11.51318 -11.29938 -10.81169 -10.56469 -9.92158 -9.37486 -8.18054 -6.31917 -0.88719 -0.14738 0.18318 0.79412 1.30092 1.43235 1.45487 1.52626 1.56312 1.83750 1.99905 2.38914 2.43760 2.74163 2.81002 3.11916 3.15827 3.29868 3.73839 3.91258 3.94130 3.99456 4.31623 4.46358 4.56068 4.60822 4.79381 4.89919 5.00604 5.05875 5.10487 5.49133 5.54563 5.62730 5.85583 5.94706 6.16594 6.40186 6.87264 7.15422 7.38866 8.94536 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002234 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.561438 B =12532.784534 C =13507.440688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.253 1.253 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.038 3.962 10 C -0.114 4.114 11 C 0.511 3.489 12 O -0.564 6.564 13 N -0.655 5.655 14 C 0.149 3.851 15 C -0.069 4.069 16 C -0.061 4.061 17 C 0.008 3.992 18 O -0.183 6.183 19 C 0.142 3.858 20 C 0.596 3.404 21 F -0.149 7.149 22 F -0.144 7.144 23 F -0.143 7.143 24 N -0.438 5.438 25 C 0.001 3.999 26 C -0.088 4.088 27 H 0.262 0.738 28 H -0.018 1.018 29 H -0.018 1.018 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.438 0.562 33 H 0.204 0.796 34 H 0.193 0.807 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -27.492 -1.558 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.177 1.177 7 C -0.578 4.578 8 H 0.099 0.901 9 C 0.000 4.000 10 C -0.154 4.154 11 C 0.302 3.698 12 O -0.441 6.441 13 N -0.303 5.303 14 C 0.052 3.948 15 C -0.088 4.088 16 C -0.080 4.080 17 C -0.042 4.042 18 O -0.072 6.072 19 C -0.073 4.073 20 C 0.540 3.460 21 F -0.131 7.131 22 F -0.125 7.125 23 F -0.124 7.124 24 N -0.169 5.169 25 C -0.111 4.111 26 C -0.110 4.110 27 H 0.070 0.930 28 H 0.001 0.999 29 H 0.000 1.000 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.280 0.720 33 H 0.221 0.779 34 H 0.210 0.790 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.229 -26.994 -1.204 27.522 hybrid contribution -0.100 0.794 0.005 0.800 sum 5.129 -26.200 -1.200 26.725 Atomic orbital electron populations 1.70184 1.08385 1.27754 1.51629 1.26144 0.95668 1.04026 0.94775 0.85336 0.78729 0.77791 0.78482 1.19749 1.21584 1.17661 1.21726 0.94162 0.91425 1.50491 0.90140 1.18729 0.93832 0.92609 0.94781 1.21670 0.99231 0.88594 1.05892 1.21745 0.88030 0.86660 0.73408 1.90718 1.16805 1.87790 1.48824 1.43483 1.11833 1.02222 1.72807 1.17746 0.92422 0.87749 0.96877 1.21463 1.02428 0.89272 0.95683 1.20279 0.88037 1.00134 0.99533 1.20870 0.94687 0.85218 1.03461 1.84440 1.25062 1.38138 1.59596 1.25818 0.91970 0.91833 0.97640 1.15785 0.78230 0.76486 0.75486 1.93335 1.64350 1.95182 1.60192 1.93323 1.91183 1.32081 1.95946 1.93329 1.85893 1.90359 1.42802 1.70398 1.17374 1.08501 1.20672 1.19659 0.91760 0.96906 1.02813 1.20343 0.95619 0.94606 1.00434 0.92965 0.99916 1.00005 0.86755 0.86500 0.72004 0.77871 0.78992 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.08 13.29 21.45 0.28 -58.79 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.04 2.02 4.26 29.85 0.13 2.15 16 10 C -0.11 -4.03 5.64 29.85 0.17 -3.87 16 11 C 0.51 17.56 7.67 87.66 0.67 18.23 16 12 O -0.56 -26.03 13.41 -3.06 -0.04 -26.07 16 13 N -0.65 -14.27 5.34 -303.48 -1.62 -15.89 16 14 C 0.15 3.38 6.30 38.09 0.24 3.62 16 15 C -0.07 -0.86 9.94 22.43 0.22 -0.64 16 16 C -0.06 -0.81 10.05 22.28 0.22 -0.59 16 17 C 0.01 0.18 7.43 22.89 0.17 0.35 16 18 O -0.18 -4.19 10.73 -10.56 -0.11 -4.31 16 19 C 0.14 3.58 7.48 88.39 0.66 4.24 16 20 C 0.60 11.95 3.57 71.24 0.25 12.21 16 21 F -0.15 -2.98 17.30 44.97 0.78 -2.20 16 22 F -0.14 -2.44 17.27 44.97 0.78 -1.67 16 23 F -0.14 -3.04 17.22 44.97 0.77 -2.27 16 24 N -0.44 -13.87 11.22 -296.30 -3.33 -17.20 16 25 C 0.00 0.04 7.23 39.31 0.28 0.32 16 26 C -0.09 -2.78 8.74 22.60 0.20 -2.58 16 27 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 28 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 29 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 30 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 32 H 0.44 5.03 8.82 -92.71 -0.82 4.21 16 33 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.12 4.76 6.21 -2.91 -0.02 4.74 16 Total: -1.00 -82.16 329.20 3.82 -78.34 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 0.37 Total: 0.54 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.92 Total: 4.15 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.66 Total: -91.88 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.15 Total: -30.37 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.33 Total: -6.13 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -82.16 3.82 -78.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292181216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.471 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds