Wall clock time and date at job start Tue Mar 31 2020 15:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46902 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47167 * 300.00193 * 3 2 1 6 6 H 1.48499 * 109.46891 * 60.00685 * 3 2 1 7 7 C 1.40150 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.41599 * 119.99915 * 0.02562 * 7 2 1 10 10 O 1.21815 * 120.00275 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00207 * 180.02562 * 9 7 2 12 12 C 1.39375 * 120.00487 * 184.48571 * 11 9 7 13 13 C 1.38956 * 120.10329 * 325.28827 * 12 11 9 14 14 C 1.38205 * 119.97890 * 179.72174 * 13 12 11 15 15 F 1.35105 * 119.90485 * 180.02562 * 14 13 12 16 16 C 1.38859 * 120.19649 * 359.97438 * 14 13 12 17 17 Cl 1.73597 * 119.89786 * 180.02562 * 16 14 13 18 18 C 1.38261 * 120.20322 * 0.02562 * 16 14 13 19 19 C 1.38748 * 120.01989 * 359.97438 * 18 16 14 20 20 N 1.39661 * 120.09219 * 180.02562 * 19 18 16 21 21 C 1.47015 * 111.00230 * 63.61463 * 20 19 18 22 22 C 1.53092 * 109.25611 * 177.60851 * 21 20 19 23 23 O 1.43013 * 109.26068 * 56.84678 * 22 21 20 24 24 C 1.43016 * 113.73995 * 301.32477 * 23 22 21 25 25 C 1.47012 * 110.99705 * 299.97522 * 20 19 18 26 26 H 0.97005 * 119.99951 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99314 * 4.49045 * 11 9 7 28 28 H 1.08003 * 120.01567 * 359.74435 * 13 12 11 29 29 H 1.08006 * 119.98752 * 179.97438 * 18 16 14 30 30 H 1.08997 * 109.50491 * 297.54296 * 21 20 19 31 31 H 1.09001 * 109.50299 * 57.67040 * 21 20 19 32 32 H 1.09009 * 109.50704 * 296.90824 * 22 21 20 33 33 H 1.09006 * 109.53805 * 176.80759 * 22 21 20 34 34 H 1.08991 * 109.50904 * 298.74297 * 24 23 22 35 35 H 1.08994 * 109.53925 * 178.62303 * 24 23 22 36 36 H 1.08991 * 109.51202 * 302.33037 * 25 20 19 37 37 H 1.09007 * 109.50479 * 62.42122 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3963 1.2126 7 6 2.0071 -1.2137 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.2990 -2.4400 -0.0016 10 8 0.0809 -2.4400 -0.0016 11 7 1.9728 -3.6072 -0.0016 12 6 1.2792 -4.8124 -0.0971 13 6 0.0310 -4.9472 0.4985 14 6 -0.6570 -6.1416 0.3973 15 9 -1.8707 -6.2709 0.9765 16 6 -0.1050 -7.2088 -0.2988 17 17 -0.9763 -8.7052 -0.4216 18 6 1.1364 -7.0832 -0.8944 19 6 1.8347 -5.8881 -0.7983 20 7 3.0886 -5.7595 -1.3999 21 6 2.9879 -5.8891 -2.8608 22 6 4.3716 -5.6827 -3.4825 23 8 5.2879 -6.6240 -2.9173 24 6 5.4111 -6.5253 -1.4959 25 6 4.0379 -6.7403 -0.8539 26 1 -0.4850 0.8401 0.0004 27 1 2.9406 -3.6085 0.0649 28 1 -0.4015 -4.1189 1.0400 29 1 1.5626 -7.9157 -1.4347 30 1 2.6200 -6.8835 -3.1134 31 1 2.2996 -5.1369 -3.2463 32 1 4.7163 -4.6695 -3.2753 33 1 4.3131 -5.8338 -4.5605 34 1 5.7860 -5.5368 -1.2308 35 1 6.1041 -7.2859 -1.1363 36 1 4.1162 -6.6095 0.2253 37 1 3.6864 -7.7484 -1.0739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293821526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:53 Heat of formation + Delta-G solvation = -92.664692 kcal Electronic energy + Delta-G solvation = -25992.098836 eV Core-core repulsion = 21903.094051 eV Total energy + Delta-G solvation = -4089.004785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.55055 -40.41910 -38.83382 -37.37998 -36.36428 -35.09513 -33.54472 -32.50420 -31.25729 -29.94522 -29.14812 -26.83027 -25.92557 -24.05346 -23.15979 -21.85649 -20.35273 -20.10763 -17.98148 -17.43672 -17.09773 -16.29112 -16.18834 -15.62133 -15.45838 -15.32511 -15.11292 -15.05284 -14.83393 -14.25634 -14.02032 -13.69671 -13.27568 -13.05612 -12.77247 -12.65578 -12.40952 -12.27464 -11.72361 -11.67408 -11.46772 -11.39311 -11.26585 -10.93183 -10.85594 -10.72600 -10.59256 -10.39060 -9.80084 -9.37835 -8.98652 -8.56960 -8.48133 -7.83105 -7.28536 -6.48576 -5.01949 1.28533 1.45395 2.29064 2.97992 3.07587 3.11869 3.60648 3.68440 3.81949 3.89448 4.27002 4.31675 4.62771 4.81713 4.89830 5.02657 5.07299 5.11121 5.18662 5.43341 5.48730 5.56340 5.58726 5.65529 5.73446 5.81355 5.86296 6.01717 6.11538 6.31910 6.45550 6.80005 7.01122 7.04313 7.14443 7.27803 7.71575 7.89306 8.02129 8.69668 9.13263 10.25288 10.44390 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009628 B = 0.005000 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.353111 B = 5598.724320 C = 8104.399382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.087 3.913 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.539 3.461 10 O -0.566 6.566 11 N -0.678 5.678 12 C 0.258 3.742 13 C -0.156 4.156 14 C 0.132 3.868 15 F -0.131 7.131 16 C -0.113 4.113 17 Cl -0.074 7.074 18 C -0.087 4.087 19 C 0.018 3.982 20 N -0.483 5.483 21 C 0.025 3.975 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.019 3.981 26 H 0.274 0.726 27 H 0.402 0.598 28 H 0.169 0.831 29 H 0.131 0.869 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -11.706 -2.624 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.349 3.651 10 O -0.450 6.450 11 N -0.318 5.318 12 C 0.154 3.846 13 C -0.179 4.179 14 C 0.111 3.889 15 F -0.109 7.109 16 C -0.142 4.142 17 Cl -0.046 7.046 18 C -0.109 4.109 19 C -0.080 4.080 20 N -0.205 5.205 21 C -0.102 4.102 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.108 4.108 26 H 0.085 0.915 27 H 0.237 0.763 28 H 0.186 0.814 29 H 0.149 0.851 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.940 -11.220 -2.638 13.454 hybrid contribution 0.035 -0.026 0.032 0.054 sum 6.975 -11.246 -2.606 13.488 Atomic orbital electron populations 1.70011 1.07326 1.28025 1.31707 1.25779 0.94660 1.00786 0.92390 0.86211 0.80565 0.80980 0.78521 1.18463 1.19882 1.19860 1.20028 0.94505 0.89755 1.52268 0.90923 1.17126 0.87633 0.82023 0.78325 1.90667 1.13537 1.85665 1.55162 1.44142 1.10307 1.03358 1.74042 1.17564 0.91107 0.86298 0.89640 1.21445 0.96235 0.96558 1.03671 1.17317 0.82000 0.93432 0.96149 1.91499 1.41067 1.96274 1.82095 1.20521 0.96348 0.88246 1.09105 1.98328 1.76482 1.32342 1.97442 1.20967 0.92688 0.98073 0.99146 1.18370 0.93013 0.93679 1.02969 1.59542 1.06450 1.50053 1.04438 1.22854 0.98800 1.01571 0.87003 1.22696 0.87573 0.93329 0.97682 1.87958 1.63562 1.58374 1.20745 1.22671 0.95463 1.02357 0.80786 1.22918 0.93207 0.94012 1.00669 0.91523 0.76302 0.81350 0.85078 0.93652 0.89090 0.91779 0.88405 0.91936 0.88509 0.89371 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.57 11.73 55.56 0.65 -19.92 16 2 C 0.09 2.23 5.50 -17.34 -0.10 2.14 16 3 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.53 -13.63 9.30 -37.58 -0.35 -13.98 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 13.96 7.41 -14.98 -0.11 13.85 16 10 O -0.57 -16.66 12.28 5.09 0.06 -16.60 16 11 N -0.68 -14.11 5.13 -12.31 -0.06 -14.18 16 12 C 0.26 5.00 6.33 -83.54 -0.53 4.47 16 13 C -0.16 -3.20 8.65 -39.33 -0.34 -3.54 16 14 C 0.13 2.44 7.27 -39.36 -0.29 2.16 16 15 F -0.13 -2.46 16.82 2.25 0.04 -2.42 16 16 C -0.11 -1.83 6.33 -39.34 -0.25 -2.08 16 17 Cl -0.07 -1.08 28.60 -51.86 -1.48 -2.57 16 18 C -0.09 -1.30 8.39 -39.38 -0.33 -1.63 16 19 C 0.02 0.28 4.76 -83.48 -0.40 -0.11 16 20 N -0.48 -6.65 4.18 -170.54 -0.71 -7.36 16 21 C 0.02 0.31 5.40 -3.71 -0.02 0.29 16 22 C 0.06 0.71 7.01 37.21 0.26 0.98 16 23 O -0.39 -4.63 10.83 -35.23 -0.38 -5.02 16 24 C 0.06 0.65 7.01 37.21 0.26 0.91 16 25 C 0.02 0.21 5.36 -3.71 -0.02 0.19 16 26 H 0.27 6.83 8.29 -40.82 -0.34 6.50 16 27 H 0.40 7.42 8.47 -40.82 -0.35 7.07 16 28 H 0.17 3.95 6.20 -52.48 -0.33 3.63 16 29 H 0.13 1.69 7.03 -52.48 -0.37 1.32 16 30 H 0.05 0.55 7.41 -51.93 -0.38 0.17 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.51 7.21 -51.92 -0.37 0.14 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -29.90 330.49 -8.02 -37.93 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.88 Total: 8.00 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.21 Total: 3.65 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.13 Total: -41.45 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.32 Total: -21.61 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.48 Total: -2.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.90 -8.02 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293821526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.739 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds