Wall clock time and date at job start Tue Mar 31 2020 15:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46902 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47167 * 300.00193 * 3 2 1 6 6 H 1.48499 * 109.46891 * 60.00685 * 3 2 1 7 7 C 1.40150 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.41599 * 119.99915 * 0.02562 * 7 2 1 10 10 O 1.21815 * 120.00275 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00207 * 180.02562 * 9 7 2 12 12 C 1.39375 * 120.00487 * 184.48571 * 11 9 7 13 13 C 1.38956 * 120.10329 * 325.28827 * 12 11 9 14 14 C 1.38205 * 119.97890 * 179.72174 * 13 12 11 15 15 F 1.35105 * 119.90485 * 180.02562 * 14 13 12 16 16 C 1.38859 * 120.19649 * 359.97438 * 14 13 12 17 17 Cl 1.73597 * 119.89786 * 180.02562 * 16 14 13 18 18 C 1.38261 * 120.20322 * 0.02562 * 16 14 13 19 19 C 1.38748 * 120.01989 * 359.97438 * 18 16 14 20 20 N 1.39661 * 120.09219 * 180.02562 * 19 18 16 21 21 C 1.47015 * 111.00230 * 63.61463 * 20 19 18 22 22 C 1.53092 * 109.25611 * 177.60851 * 21 20 19 23 23 O 1.43013 * 109.26068 * 56.84678 * 22 21 20 24 24 C 1.43016 * 113.73995 * 301.32477 * 23 22 21 25 25 C 1.47012 * 110.99705 * 299.97522 * 20 19 18 26 26 H 0.97005 * 119.99951 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99314 * 4.49045 * 11 9 7 28 28 H 1.08003 * 120.01567 * 359.74435 * 13 12 11 29 29 H 1.08006 * 119.98752 * 179.97438 * 18 16 14 30 30 H 1.08997 * 109.50491 * 297.54296 * 21 20 19 31 31 H 1.09001 * 109.50299 * 57.67040 * 21 20 19 32 32 H 1.09009 * 109.50704 * 296.90824 * 22 21 20 33 33 H 1.09006 * 109.53805 * 176.80759 * 22 21 20 34 34 H 1.08991 * 109.50904 * 298.74297 * 24 23 22 35 35 H 1.08994 * 109.53925 * 178.62303 * 24 23 22 36 36 H 1.08991 * 109.51202 * 302.33037 * 25 20 19 37 37 H 1.09007 * 109.50479 * 62.42122 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3963 1.2126 7 6 2.0071 -1.2137 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.2990 -2.4400 -0.0016 10 8 0.0809 -2.4400 -0.0016 11 7 1.9728 -3.6072 -0.0016 12 6 1.2792 -4.8124 -0.0971 13 6 0.0310 -4.9472 0.4985 14 6 -0.6570 -6.1416 0.3973 15 9 -1.8707 -6.2709 0.9765 16 6 -0.1050 -7.2088 -0.2988 17 17 -0.9763 -8.7052 -0.4216 18 6 1.1364 -7.0832 -0.8944 19 6 1.8347 -5.8881 -0.7983 20 7 3.0886 -5.7595 -1.3999 21 6 2.9879 -5.8891 -2.8608 22 6 4.3716 -5.6827 -3.4825 23 8 5.2879 -6.6240 -2.9173 24 6 5.4111 -6.5253 -1.4959 25 6 4.0379 -6.7403 -0.8539 26 1 -0.4850 0.8401 0.0004 27 1 2.9406 -3.6085 0.0649 28 1 -0.4015 -4.1189 1.0400 29 1 1.5626 -7.9157 -1.4347 30 1 2.6200 -6.8835 -3.1134 31 1 2.2996 -5.1369 -3.2463 32 1 4.7163 -4.6695 -3.2753 33 1 4.3131 -5.8338 -4.5605 34 1 5.7860 -5.5368 -1.2308 35 1 6.1041 -7.2859 -1.1363 36 1 4.1162 -6.6095 0.2253 37 1 3.6864 -7.7484 -1.0739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293821526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:53 Heat of formation + Delta-G solvation = -112.823495 kcal Electronic energy + Delta-G solvation = -25992.972987 eV Core-core repulsion = 21903.094051 eV Total energy + Delta-G solvation = -4089.878936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.04498 -41.68642 -40.15402 -38.95658 -37.64166 -36.29358 -35.28815 -34.45739 -32.13958 -31.34432 -30.60496 -28.55350 -27.18653 -24.95568 -24.63937 -23.25250 -21.90749 -21.32400 -19.68709 -18.86788 -18.39736 -17.93809 -17.33022 -17.08688 -16.87083 -16.79953 -16.18397 -16.10184 -15.87654 -15.85354 -15.33641 -15.12731 -14.68965 -14.64384 -14.37594 -13.97340 -13.83508 -13.35503 -13.30548 -13.03779 -12.89522 -12.72337 -12.64945 -12.35246 -12.23417 -12.08328 -11.98345 -11.53373 -11.07075 -10.79107 -10.68523 -10.04641 -9.76829 -9.58239 -8.87221 -8.40364 -7.03300 -0.14240 0.03252 0.95680 1.38621 1.41304 1.58864 2.15319 2.20482 2.47273 2.55110 2.74760 2.97502 3.12973 3.56383 3.68826 3.92843 3.94449 4.10296 4.17524 4.21348 4.28007 4.32398 4.59525 4.62588 4.67688 4.75777 4.80311 4.84361 4.93311 5.00853 5.08425 5.21654 5.47777 5.81175 5.87185 5.97597 6.12062 6.19443 6.35375 6.73086 7.34470 8.34715 8.53803 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009628 B = 0.005000 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.353111 B = 5598.724320 C = 8104.399382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.092 0.908 9 C 0.528 3.472 10 O -0.613 6.613 11 N -0.670 5.670 12 C 0.232 3.768 13 C -0.175 4.175 14 C 0.119 3.881 15 F -0.137 7.137 16 C -0.101 4.101 17 Cl -0.051 7.051 18 C -0.074 4.074 19 C 0.044 3.956 20 N -0.496 5.496 21 C 0.025 3.975 22 C 0.069 3.931 23 O -0.397 6.397 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.279 0.721 27 H 0.413 0.587 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -13.148 -3.664 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.184 4.184 3 Si 0.817 3.183 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.110 0.890 9 C 0.339 3.661 10 O -0.500 6.500 11 N -0.312 5.312 12 C 0.129 3.871 13 C -0.198 4.198 14 C 0.098 3.902 15 F -0.115 7.115 16 C -0.130 4.130 17 Cl -0.022 7.022 18 C -0.095 4.095 19 C -0.054 4.054 20 N -0.219 5.219 21 C -0.102 4.102 22 C -0.008 4.008 23 O -0.315 6.315 24 C -0.012 4.012 25 C -0.107 4.107 26 H 0.089 0.911 27 H 0.250 0.750 28 H 0.146 0.854 29 H 0.182 0.818 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.509 -12.730 -3.679 16.309 hybrid contribution -0.765 0.225 0.343 0.868 sum 8.744 -12.504 -3.336 15.619 Atomic orbital electron populations 1.70163 1.09691 1.29501 1.33332 1.26987 0.95409 1.05073 0.90969 0.84949 0.79570 0.75139 0.78594 1.16669 1.19357 1.19343 1.20532 0.95589 0.90310 1.52551 0.88986 1.17419 0.87253 0.83652 0.77804 1.90638 1.15478 1.86837 1.57052 1.43584 1.10517 1.02876 1.74241 1.17719 0.91183 0.86801 0.91367 1.21131 0.97418 0.96445 1.04854 1.17327 0.81954 0.93682 0.97222 1.91475 1.41419 1.96282 1.82362 1.20597 0.96595 0.88371 1.07481 1.98342 1.76133 1.30461 1.97243 1.21252 0.91723 0.98364 0.98163 1.18353 0.93645 0.92513 1.00846 1.59540 1.05499 1.51654 1.05178 1.22882 0.99688 1.01561 0.86064 1.22711 0.86358 0.93008 0.98714 1.87958 1.63507 1.58438 1.21619 1.22809 0.95115 1.03311 0.79961 1.23023 0.93053 0.93611 1.01032 0.91062 0.75050 0.85394 0.81823 0.92540 0.90849 0.92408 0.86343 0.92095 0.85891 0.88873 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.06 11.73 21.85 0.26 -45.81 16 2 C 0.03 1.78 5.50 85.34 0.47 2.25 16 3 Si 1.00 38.04 29.56 68.60 2.03 40.07 16 4 H -0.24 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.56 -29.16 9.30 23.56 0.22 -28.94 16 8 H 0.09 4.29 7.85 -2.92 -0.02 4.27 16 9 C 0.53 28.69 7.41 85.07 0.63 29.32 16 10 O -0.61 -38.41 12.28 -4.72 -0.06 -38.47 16 11 N -0.67 -28.84 5.13 -311.04 -1.60 -30.44 16 12 C 0.23 9.20 6.33 38.52 0.24 9.44 16 13 C -0.18 -7.60 8.65 22.43 0.19 -7.41 16 14 C 0.12 4.50 7.27 22.41 0.16 4.66 16 15 F -0.14 -5.29 16.82 44.97 0.76 -4.53 16 16 C -0.10 -3.14 6.33 22.42 0.14 -3.00 16 17 Cl -0.05 -1.35 28.60 -2.72 -0.08 -1.43 16 18 C -0.07 -2.02 8.39 22.40 0.19 -1.83 16 19 C 0.04 1.37 4.76 38.42 0.18 1.55 16 20 N -0.50 -12.70 4.18 -693.48 -2.90 -15.60 16 21 C 0.02 0.57 5.40 86.31 0.47 1.04 16 22 C 0.07 1.36 7.01 72.01 0.50 1.87 16 23 O -0.40 -8.19 10.83 -148.98 -1.61 -9.80 16 24 C 0.06 1.11 7.01 72.02 0.50 1.61 16 25 C 0.02 0.37 5.36 86.32 0.46 0.83 16 26 H 0.28 14.52 8.29 -92.70 -0.77 13.75 16 27 H 0.41 15.42 8.47 -92.71 -0.78 14.63 16 28 H 0.13 6.62 6.20 -2.91 -0.02 6.60 16 29 H 0.16 3.49 7.03 -2.91 -0.02 3.47 16 30 H 0.06 1.19 7.41 -2.39 -0.02 1.17 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.01 7.21 -2.38 -0.02 0.99 16 Total: -1.00 -68.32 330.49 1.52 -66.80 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.35 Total: 27.82 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.37 Total: 11.40 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -4.24 Total: -91.85 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -1.67 Total: -48.27 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.76 Total: -4.53 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -68.32 1.52 -66.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293821526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.025 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds