Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48507 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47179 * 299.99929 * 3 2 1 6 6 H 1.48495 * 109.47185 * 60.00405 * 3 2 1 7 7 C 1.38792 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00205 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.81009 * 100.00121 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.46943 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00392 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.40112 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.34779 * 119.99742 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99838 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.46892 * 179.97438 * 17 15 14 19 19 C 1.35951 * 116.99758 * 179.97438 * 18 17 15 20 20 C 1.38708 * 120.03040 * 0.28885 * 19 18 17 21 21 C 1.38147 * 119.96935 * 180.25012 * 20 19 18 22 22 C 1.38455 * 120.02958 * 359.46222 * 21 20 19 23 23 F 1.35101 * 119.97206 * 180.29906 * 22 21 20 24 24 C 1.38452 * 120.06193 * 0.28172 * 22 21 20 25 25 C 1.38156 * 120.03063 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99821 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46963 * 59.99706 * 10 9 7 28 28 H 1.08995 * 109.46924 * 299.99840 * 10 9 7 29 29 H 0.96993 * 120.00233 * 0.02562 * 13 11 10 30 30 H 0.96993 * 120.00020 * 359.97438 * 14 13 11 31 31 H 1.09005 * 109.46403 * 60.00348 * 17 15 14 32 32 H 1.08995 * 109.47035 * 300.00415 * 17 15 14 33 33 H 1.07998 * 120.01328 * 0.02562 * 20 19 18 34 34 H 1.08002 * 119.98838 * 179.74746 * 21 20 19 35 35 H 1.07997 * 119.98751 * 179.97438 * 24 22 21 36 36 H 1.07999 * 120.02057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0008 14 7 2.3527 -7.6552 0.0008 15 6 3.2094 -8.6956 0.0009 16 8 4.4057 -8.4960 0.0005 17 6 2.6809 -10.1069 0.0016 18 8 3.7756 -11.0254 0.0010 19 6 3.4698 -12.3500 0.0020 20 6 2.1435 -12.7563 -0.0026 21 6 1.8341 -14.1026 0.0037 22 6 2.8472 -15.0464 0.0032 23 9 2.5433 -16.3628 0.0032 24 6 4.1715 -14.6424 0.0024 25 6 4.4837 -13.2966 0.0015 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1243 -3.7314 -0.8894 29 1 3.8008 -6.1835 0.0004 30 1 1.3960 -7.8148 0.0015 31 1 2.0721 -10.2672 -0.8883 32 1 2.0726 -10.2666 0.8917 33 1 1.3531 -12.0203 -0.0073 34 1 0.8016 -14.4193 0.0043 35 1 4.9607 -15.3795 0.0024 36 1 5.5168 -12.9816 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298383007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = -88.132017 kcal Electronic energy + Delta-G solvation = -23073.686012 eV Core-core repulsion = 18986.921485 eV Total energy + Delta-G solvation = -4086.764527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.25276 -40.97624 -40.14935 -38.87725 -37.55003 -35.37524 -32.51239 -32.33013 -31.78178 -30.39957 -29.25129 -27.69402 -25.56008 -23.75892 -22.81896 -21.68630 -21.10539 -19.08685 -18.23930 -18.05465 -17.71519 -17.42032 -16.98065 -16.81246 -15.97456 -15.87710 -15.47626 -15.27397 -14.95916 -14.87213 -14.61434 -14.30395 -14.18725 -13.78948 -13.51473 -13.50443 -12.95040 -12.83232 -12.70967 -12.42192 -11.51839 -11.45313 -11.31474 -11.11968 -11.11251 -10.85222 -10.49391 -9.92216 -9.85398 -9.73793 -9.15138 -8.64747 -8.50840 -8.37709 -6.61692 -6.30265 -4.02303 0.60824 0.68415 1.34030 1.99764 2.62604 2.78624 3.03386 3.13298 3.17545 3.25958 3.35687 3.72267 3.83525 4.10909 4.12248 4.21393 4.29742 4.40743 4.44408 4.59293 4.76612 4.93341 5.01446 5.05859 5.32919 5.47120 5.57329 5.62961 5.65159 5.69599 5.97847 6.11793 6.46058 6.49114 6.74713 7.37230 7.52899 7.65913 8.27463 8.32520 9.15803 10.77181 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.053831 B = 0.001583 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.021145 B =17681.671415 C =18181.245208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.076 0.924 9 S -0.051 6.051 10 C -0.146 4.146 11 C 0.537 3.463 12 O -0.515 6.515 13 N -0.529 5.529 14 N -0.515 5.515 15 C 0.514 3.486 16 O -0.518 6.518 17 C 0.051 3.949 18 O -0.284 6.284 19 C 0.122 3.878 20 C -0.182 4.182 21 C -0.111 4.111 22 C 0.059 3.941 23 F -0.141 7.141 24 C -0.112 4.112 25 C -0.118 4.118 26 H 0.269 0.731 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.432 0.568 30 H 0.433 0.567 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -27.898 0.002 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.175 5.825 10 C -0.297 4.297 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.281 5.281 14 N -0.264 5.264 15 C 0.298 3.702 16 O -0.392 6.392 17 C -0.029 4.029 18 O -0.196 6.196 19 C 0.076 3.924 20 C -0.201 4.201 21 C -0.130 4.130 22 C 0.040 3.960 23 F -0.120 7.120 24 C -0.131 4.131 25 C -0.136 4.136 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.274 0.726 30 H 0.275 0.725 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.838 -27.936 0.001 28.352 hybrid contribution 1.556 1.018 0.001 1.860 sum 6.395 -26.919 0.002 27.668 Atomic orbital electron populations 1.70017 1.05982 1.27529 1.46711 1.24995 0.95048 0.99110 0.94340 0.86086 0.79615 0.81672 0.77951 1.19530 1.20519 1.20513 1.22911 0.95076 0.91374 1.59240 0.90603 1.85427 1.04030 0.96260 1.96801 1.23494 1.07328 0.93018 1.05907 1.20740 0.86399 0.85291 0.75246 1.90729 1.14980 1.84941 1.48099 1.45221 1.10659 0.93613 1.78622 1.44472 1.10276 0.95975 1.75659 1.20038 0.86841 0.85242 0.78095 1.90794 1.14789 1.85044 1.48568 1.22275 0.89374 0.86380 1.04880 1.86163 1.32428 1.12520 1.88537 1.19042 0.93287 0.83035 0.96991 1.21168 0.95383 0.96657 1.06905 1.20963 0.99552 0.92061 1.00395 1.17614 0.93669 0.78003 1.06758 1.91504 1.93935 1.32260 1.94279 1.20994 0.95171 0.96153 1.00748 1.20323 0.99476 0.90249 1.03597 0.92122 0.88345 0.88341 0.72610 0.72484 0.87991 0.87981 0.84148 0.84218 0.83855 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.22 55.49 0.73 -24.58 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 8 H 0.08 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.05 -1.31 20.57 -107.50 -2.21 -3.52 16 10 C -0.15 -2.69 6.16 36.00 0.22 -2.47 16 11 C 0.54 9.03 7.96 -10.99 -0.09 8.94 16 12 O -0.52 -10.24 15.70 5.56 0.09 -10.16 16 13 N -0.53 -6.95 6.26 31.22 0.20 -6.76 16 14 N -0.52 -5.54 6.26 31.22 0.20 -5.35 16 15 C 0.51 5.38 8.02 -10.98 -0.09 5.29 16 16 O -0.52 -7.51 16.34 -14.36 -0.23 -7.74 16 17 C 0.05 0.34 5.22 36.01 0.19 0.52 16 18 O -0.28 -2.62 9.67 -39.50 -0.38 -3.00 16 19 C 0.12 0.94 6.69 -39.23 -0.26 0.68 16 20 C -0.18 -1.09 9.04 -39.44 -0.36 -1.45 16 21 C -0.11 -0.69 10.02 -39.53 -0.40 -1.09 16 22 C 0.06 0.43 7.30 -39.42 -0.29 0.15 16 23 F -0.14 -1.18 17.27 2.25 0.04 -1.14 16 24 C -0.11 -0.72 10.02 -39.53 -0.40 -1.12 16 25 C -0.12 -0.83 9.99 -39.44 -0.39 -1.23 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.43 5.14 8.00 -182.60 -1.46 3.68 16 30 H 0.43 3.92 8.00 -182.60 -1.46 2.46 16 31 H 0.10 0.39 7.65 -51.93 -0.40 0.00 16 32 H 0.10 0.39 7.67 -51.93 -0.40 0.00 16 33 H 0.14 0.48 6.30 -52.49 -0.33 0.15 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -35.79 345.76 -8.76 -44.55 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.71 Total: 0.92 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.66 Total: -4.22 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 1.12 Total: -36.68 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.53 Total: -20.90 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.21 Total: -3.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.79 -8.76 -44.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298383007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.586 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds