Wall clock time and date at job start Tue Mar 31 2020 14:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48507 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47179 * 299.99929 * 3 2 1 6 6 H 1.48495 * 109.47185 * 60.00405 * 3 2 1 7 7 C 1.38792 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00205 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.81009 * 100.00121 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.46943 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00392 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.40112 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.34779 * 119.99742 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99838 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.46892 * 179.97438 * 17 15 14 19 19 C 1.35951 * 116.99758 * 179.97438 * 18 17 15 20 20 C 1.38708 * 120.03040 * 0.28885 * 19 18 17 21 21 C 1.38147 * 119.96935 * 180.25012 * 20 19 18 22 22 C 1.38455 * 120.02958 * 359.46222 * 21 20 19 23 23 F 1.35101 * 119.97206 * 180.29906 * 22 21 20 24 24 C 1.38452 * 120.06193 * 0.28172 * 22 21 20 25 25 C 1.38156 * 120.03063 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99821 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46963 * 59.99706 * 10 9 7 28 28 H 1.08995 * 109.46924 * 299.99840 * 10 9 7 29 29 H 0.96993 * 120.00233 * 0.02562 * 13 11 10 30 30 H 0.96993 * 120.00020 * 359.97438 * 14 13 11 31 31 H 1.09005 * 109.46403 * 60.00348 * 17 15 14 32 32 H 1.08995 * 109.47035 * 300.00415 * 17 15 14 33 33 H 1.07998 * 120.01328 * 0.02562 * 20 19 18 34 34 H 1.08002 * 119.98838 * 179.74746 * 21 20 19 35 35 H 1.07997 * 119.98751 * 179.97438 * 24 22 21 36 36 H 1.07999 * 120.02057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0008 14 7 2.3527 -7.6552 0.0008 15 6 3.2094 -8.6956 0.0009 16 8 4.4057 -8.4960 0.0005 17 6 2.6809 -10.1069 0.0016 18 8 3.7756 -11.0254 0.0010 19 6 3.4698 -12.3500 0.0020 20 6 2.1435 -12.7563 -0.0026 21 6 1.8341 -14.1026 0.0037 22 6 2.8472 -15.0464 0.0032 23 9 2.5433 -16.3628 0.0032 24 6 4.1715 -14.6424 0.0024 25 6 4.4837 -13.2966 0.0015 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1243 -3.7314 -0.8894 29 1 3.8008 -6.1835 0.0004 30 1 1.3960 -7.8148 0.0015 31 1 2.0721 -10.2672 -0.8883 32 1 2.0726 -10.2666 0.8917 33 1 1.3531 -12.0203 -0.0073 34 1 0.8016 -14.4193 0.0043 35 1 4.9607 -15.3795 0.0024 36 1 5.5168 -12.9816 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298383007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:38 Heat of formation + Delta-G solvation = -113.076225 kcal Electronic energy + Delta-G solvation = -23074.767674 eV Core-core repulsion = 18986.921485 eV Total energy + Delta-G solvation = -4087.846189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.82312 -41.73274 -41.02733 -39.96626 -38.14123 -36.48619 -34.58212 -33.39922 -32.29516 -31.14959 -30.23556 -28.53241 -27.62308 -24.27204 -23.38144 -22.74659 -22.10231 -19.93023 -19.63012 -19.03667 -18.57475 -18.30761 -17.64599 -17.60400 -16.90779 -16.86565 -16.72664 -16.49663 -16.19856 -15.77831 -15.59249 -15.57663 -14.96285 -14.69557 -14.54342 -14.34215 -13.99911 -13.88617 -13.39220 -13.38024 -13.16024 -12.91809 -12.63245 -12.51578 -11.99163 -11.93998 -11.75037 -11.47259 -11.16941 -11.15446 -10.30283 -10.19173 -9.59264 -9.16742 -8.66046 -8.35258 -6.12468 0.15033 0.17606 0.37756 1.08320 1.33277 1.42423 1.50868 1.54243 1.61541 2.05877 2.26261 2.55082 2.89302 2.99964 3.20048 3.33562 3.43441 3.70661 3.80826 3.88554 4.00604 4.05062 4.17307 4.25155 4.31446 4.49529 4.55415 4.90707 5.11457 5.14438 5.18415 5.39508 5.44126 5.52595 5.67855 6.20358 6.20811 6.35052 6.70167 7.07469 7.16851 8.73896 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.053831 B = 0.001583 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.021145 B =17681.671415 C =18181.245208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.085 0.915 9 S -0.132 6.132 10 C -0.126 4.126 11 C 0.544 3.456 12 O -0.550 6.550 13 N -0.516 5.516 14 N -0.509 5.509 15 C 0.517 3.483 16 O -0.561 6.561 17 C 0.052 3.948 18 O -0.311 6.311 19 C 0.110 3.890 20 C -0.178 4.178 21 C -0.112 4.112 22 C 0.039 3.961 23 F -0.151 7.151 24 C -0.113 4.113 25 C -0.131 4.131 26 H 0.271 0.729 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.439 0.561 30 H 0.442 0.558 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -28.569 0.001 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.696 4.696 8 H 0.103 0.897 9 S 0.094 5.906 10 C -0.278 4.278 11 C 0.330 3.670 12 O -0.425 6.425 13 N -0.267 5.267 14 N -0.259 5.259 15 C 0.304 3.696 16 O -0.437 6.437 17 C -0.027 4.027 18 O -0.224 6.224 19 C 0.065 3.935 20 C -0.196 4.196 21 C -0.131 4.131 22 C 0.020 3.980 23 F -0.130 7.130 24 C -0.131 4.131 25 C -0.149 4.149 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.283 0.717 30 H 0.287 0.713 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.585 -28.645 0.000 29.184 hybrid contribution 1.396 1.059 0.001 1.753 sum 6.981 -27.585 0.001 28.455 Atomic orbital electron populations 1.70165 1.07854 1.28588 1.48010 1.26056 0.95925 1.03143 0.93736 0.84940 0.78648 0.76573 0.78014 1.18150 1.20041 1.20032 1.23268 0.95536 0.92018 1.58820 0.89732 1.85509 1.09278 0.98684 1.97087 1.23293 1.04360 0.92368 1.07800 1.20228 0.85981 0.85434 0.75325 1.90721 1.16346 1.85323 1.50121 1.44812 1.10522 0.94559 1.76793 1.44645 1.11012 0.94597 1.75689 1.20823 0.86125 0.86371 0.76271 1.90781 1.16733 1.85744 1.50476 1.22504 0.88914 0.83183 1.08137 1.86109 1.33964 1.13341 1.88992 1.19207 0.94191 0.82458 0.97690 1.21447 0.95346 0.97108 1.05686 1.21230 1.00249 0.92029 0.99583 1.17902 0.94450 0.77886 1.07745 1.91478 1.94025 1.32981 1.94470 1.21149 0.95475 0.96294 1.00226 1.20479 0.99873 0.90551 1.04028 0.91954 0.86399 0.86394 0.71686 0.71345 0.84578 0.84572 0.81254 0.82412 0.82460 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.94 13.22 21.65 0.29 -53.66 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -29.97 9.50 67.95 0.65 -29.33 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.13 -6.86 20.57 -56.49 -1.16 -8.02 16 10 C -0.13 -4.53 6.16 71.23 0.44 -4.09 16 11 C 0.54 17.73 7.96 87.65 0.70 18.43 16 12 O -0.55 -21.65 15.70 -3.04 -0.05 -21.70 16 13 N -0.52 -12.70 6.26 -173.53 -1.09 -13.78 16 14 N -0.51 -9.88 6.26 -173.53 -1.09 -10.96 16 15 C 0.52 9.73 8.02 87.66 0.70 10.43 16 16 O -0.56 -15.59 16.34 16.00 0.26 -15.33 16 17 C 0.05 0.52 5.22 71.24 0.37 0.89 16 18 O -0.31 -5.13 9.67 -73.96 -0.72 -5.84 16 19 C 0.11 1.49 6.69 22.50 0.15 1.64 16 20 C -0.18 -1.62 9.04 22.36 0.20 -1.42 16 21 C -0.11 -1.16 10.02 22.30 0.22 -0.93 16 22 C 0.04 0.53 7.30 22.37 0.16 0.70 16 23 F -0.15 -2.41 17.27 44.97 0.78 -1.64 16 24 C -0.11 -1.37 10.02 22.30 0.22 -1.14 16 25 C -0.13 -1.74 9.99 22.36 0.22 -1.52 16 26 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 27 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 28 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 29 H 0.44 9.69 8.00 -213.32 -1.71 7.99 16 30 H 0.44 6.98 8.00 -213.32 -1.71 5.28 16 31 H 0.14 0.47 7.65 -2.38 -0.02 0.46 16 32 H 0.14 0.48 7.67 -2.39 -0.02 0.46 16 33 H 0.17 0.43 6.30 -2.91 -0.02 0.41 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -79.48 345.76 1.51 -77.97 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -2.25 Total: 13.54 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.51 Total: -4.97 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.89 Total: -78.40 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.50 Total: -42.87 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -1.16 Total: -8.02 kcal Total: -79.48 1.51 -77.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298383007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.110 kcal (2) G-P(sol) polarization free energy of solvation -79.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds