Wall clock time and date at job start Tue Mar 31 2020 15:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47064 * 118.28577 * 3 2 1 5 5 C 1.36897 * 119.99840 * 288.57162 * 4 3 2 6 6 H 1.07997 * 120.00386 * 165.97949 * 5 4 3 7 7 C 1.39029 * 120.00019 * 345.98356 * 5 4 3 8 8 N 1.31377 * 120.00169 * 36.93646 * 7 5 4 9 9 Si 1.86797 * 119.99757 * 216.94020 * 7 5 4 10 10 H 1.48505 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47196 * 119.99709 * 9 7 5 12 12 H 1.48498 * 109.47084 * 239.99420 * 9 7 5 13 13 C 1.34772 * 120.00203 * 108.57561 * 4 3 2 14 14 O 1.21617 * 120.00437 * 186.49154 * 13 4 3 15 15 C 1.47503 * 119.99932 * 6.49186 * 13 4 3 16 16 C 1.39793 * 120.09182 * 141.01457 * 15 13 4 17 17 C 1.37693 * 119.90312 * 180.02562 * 16 15 13 18 18 C 1.39007 * 120.09440 * 0.02562 * 17 16 15 19 19 O 1.35714 * 119.90669 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99981 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47095 * 180.02562 * 20 19 18 22 22 F 1.39910 * 109.46505 * 60.00491 * 21 20 19 23 23 F 1.39892 * 109.47161 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47500 * 300.00778 * 21 20 19 25 25 C 1.39013 * 120.18838 * 0.23924 * 18 17 16 26 26 C 1.37687 * 120.09156 * 359.48129 * 25 18 17 27 27 H 1.08997 * 109.47411 * 358.27874 * 3 2 1 28 28 H 1.09008 * 109.46982 * 238.27897 * 3 2 1 29 29 H 0.97000 * 119.99889 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.04796 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.94937 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47237 * 300.00582 * 20 19 18 33 33 H 1.08997 * 109.46479 * 60.00914 * 20 19 18 34 34 H 1.08002 * 119.95221 * 179.72258 * 25 18 17 35 35 H 1.08009 * 120.04713 * 180.23161 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.6554 -1.2163 5 6 2.9685 0.0311 -2.4280 6 1 3.1134 0.5894 -3.3410 7 6 2.6522 -1.3216 -2.4831 8 7 1.8156 -1.8367 -1.6109 9 14 3.4169 -2.4067 -3.7973 10 1 4.3177 -1.5907 -4.6506 11 1 4.1963 -3.4927 -3.1507 12 1 2.3441 -2.9992 -4.6359 13 6 3.6707 1.8722 -1.1424 14 8 3.9685 2.4670 -2.1606 15 6 3.9384 2.4827 0.1734 16 6 5.1178 3.2029 0.3850 17 6 5.3640 3.7707 1.6150 18 6 4.4422 3.6282 2.6456 19 8 4.6891 4.1890 3.8566 20 6 3.6995 4.0043 4.8709 21 6 4.1495 4.7029 6.1555 22 9 4.3153 6.0701 5.9092 23 9 3.1811 4.5216 7.1487 24 9 5.3638 4.1555 6.5834 25 6 3.2708 2.9082 2.4411 26 6 3.0140 2.3420 1.2126 27 1 2.9718 -1.0263 0.0309 28 1 2.9711 0.5412 0.8742 29 1 1.5952 -2.7805 -1.6492 30 1 5.8350 3.3131 -0.4149 31 1 6.2751 4.3269 1.7794 32 1 2.7536 4.4312 4.5377 33 1 3.5701 2.9391 5.0624 34 1 2.5593 2.7960 3.2459 35 1 2.1019 1.7859 1.0534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299710955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:05 Heat of formation + Delta-G solvation = -131.583080 kcal Electronic energy + Delta-G solvation = -27081.455954 eV Core-core repulsion = 22438.966861 eV Total energy + Delta-G solvation = -4642.489093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.49040 -48.04938 -47.93576 -40.52106 -39.21027 -37.01430 -35.93959 -34.35215 -32.41283 -31.34592 -30.74179 -29.46342 -27.57371 -25.34117 -24.26098 -22.85500 -22.27062 -19.80576 -19.27285 -19.02386 -18.23114 -18.08615 -17.97852 -16.88564 -16.31147 -16.15826 -15.68504 -15.04666 -14.88054 -14.76875 -14.64818 -14.39843 -14.34823 -14.11095 -14.10736 -14.03473 -13.73452 -13.34681 -13.13670 -12.94518 -12.69617 -12.21542 -12.15285 -11.99137 -11.70373 -11.37504 -11.34718 -11.27209 -10.91332 -10.65141 -10.41410 -10.33562 -9.08262 -8.95641 -8.80784 -8.34411 -8.17613 -6.80729 -4.00397 1.16446 1.35425 1.89820 2.72419 2.99630 3.17039 3.24360 3.31451 3.35226 3.54670 3.64151 3.83451 3.96959 4.00260 4.10864 4.44777 4.51873 4.54123 4.74835 4.78623 4.82872 5.21143 5.30157 5.33501 5.43868 5.63015 5.86515 6.01598 6.14031 6.28052 6.43956 6.59582 6.62095 7.09153 7.28634 7.79101 8.15100 8.69357 8.86376 9.04653 9.62216 10.25249 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.002829 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.721016 B = 9895.059042 C =10548.112732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.252 3.748 3 C 0.189 3.811 4 N -0.427 5.427 5 C -0.331 4.331 6 H 0.116 0.884 7 C 0.050 3.950 8 N -0.846 5.846 9 Si 0.912 3.088 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.482 3.518 14 O -0.572 6.572 15 C -0.122 4.122 16 C -0.036 4.036 17 C -0.144 4.144 18 C 0.122 3.878 19 O -0.301 6.301 20 C 0.013 3.987 21 C 0.465 3.535 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.174 7.174 25 C -0.208 4.208 26 C -0.074 4.074 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.277 0.723 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 7.269 15.966 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.066 4.066 3 C 0.063 3.937 4 N -0.146 5.146 5 C -0.456 4.456 6 H 0.134 0.866 7 C -0.157 4.157 8 N -0.482 5.482 9 Si 0.737 3.263 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.273 3.727 14 O -0.457 6.457 15 C -0.126 4.126 16 C -0.055 4.055 17 C -0.162 4.162 18 C 0.078 3.922 19 O -0.215 6.215 20 C -0.065 4.065 21 C 0.411 3.589 22 F -0.155 7.155 23 F -0.154 7.154 24 F -0.155 7.155 25 C -0.227 4.227 26 C -0.093 4.093 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.425 7.470 15.568 17.826 hybrid contribution 0.321 -0.878 -0.302 0.982 sum 4.746 6.592 15.266 17.292 Atomic orbital electron populations 1.80896 1.13378 1.10878 1.09581 1.28845 0.94946 0.91108 0.91732 1.19646 0.82211 1.02182 0.89672 1.43630 1.49033 1.15434 1.06461 1.19672 1.49038 0.91629 0.85295 0.86627 1.25303 0.94409 0.97389 0.98644 1.69992 1.24985 1.15051 1.38176 0.86125 0.79887 0.79585 0.80727 1.18643 1.20099 1.20854 1.17619 0.84978 0.82235 0.87912 1.90656 1.57696 1.61366 1.35948 1.20233 0.96077 1.01291 0.94982 1.21024 0.95781 0.93049 0.95677 1.20319 0.99949 1.04651 0.91323 1.19000 0.94856 0.94583 0.83800 1.85960 1.43649 1.72690 1.19213 1.23794 0.93913 1.03145 0.85607 1.20026 0.75451 0.77738 0.85697 1.93240 1.95335 1.32761 1.94192 1.93228 1.63347 1.95154 1.63687 1.93238 1.45780 1.85307 1.91179 1.21089 0.97945 1.04172 0.99464 1.21487 0.99350 0.96741 0.91753 0.86361 0.87634 0.91158 0.84107 0.84695 0.87198 0.87101 0.85270 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.82 18.54 42.16 0.78 -10.04 16 2 C 0.25 5.41 11.69 -20.76 -0.24 5.17 16 3 C 0.19 3.66 4.80 -6.83 -0.03 3.62 16 4 N -0.43 -9.71 2.68 -119.13 -0.32 -10.03 16 5 C -0.33 -8.36 9.10 -15.00 -0.14 -8.49 16 6 H 0.12 3.14 7.43 -52.49 -0.39 2.75 16 7 C 0.05 1.19 5.01 -17.45 -0.09 1.10 16 8 N -0.85 -20.19 9.04 55.50 0.50 -19.69 16 9 Si 0.91 18.86 29.68 -169.99 -5.04 13.82 16 10 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.48 10.69 7.29 -12.49 -0.09 10.60 16 14 O -0.57 -14.71 16.53 5.26 0.09 -14.62 16 15 C -0.12 -2.11 5.40 -104.96 -0.57 -2.67 16 16 C -0.04 -0.54 9.62 -39.20 -0.38 -0.91 16 17 C -0.14 -1.80 9.97 -39.50 -0.39 -2.19 16 18 C 0.12 1.46 6.70 -39.01 -0.26 1.20 16 19 O -0.30 -3.21 10.01 -18.85 -0.19 -3.40 16 20 C 0.01 0.10 4.69 37.16 0.17 0.27 16 21 C 0.47 3.88 3.32 37.16 0.12 4.00 16 22 F -0.17 -1.70 17.26 2.25 0.04 -1.66 16 23 F -0.17 -1.39 17.32 2.25 0.04 -1.35 16 24 F -0.17 -1.68 17.26 2.25 0.04 -1.64 16 25 C -0.21 -2.45 9.01 -39.50 -0.36 -2.81 16 26 C -0.07 -1.10 7.34 -39.20 -0.29 -1.39 16 27 H 0.12 2.32 6.60 -51.93 -0.34 1.98 16 28 H 0.11 1.66 3.79 -51.92 -0.20 1.46 16 29 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 30 H 0.14 2.03 8.05 -52.49 -0.42 1.60 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.11 0.61 7.64 -51.93 -0.40 0.22 16 34 H 0.13 1.12 6.28 -52.49 -0.33 0.79 16 35 H 0.14 2.12 4.63 -52.48 -0.24 1.88 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -30.19 322.00 -4.02 -34.22 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.28 Total: 2.04 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.54 Total: 7.50 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.96 Total: -39.76 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.10 Total: -18.02 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.12 Total: -4.64 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.04 Total: 13.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.19 -4.02 -34.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299710955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.367 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds