Wall clock time and date at job start Tue Mar 31 2020 15:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47064 * 118.28577 * 3 2 1 5 5 C 1.36897 * 119.99840 * 288.57162 * 4 3 2 6 6 H 1.07997 * 120.00386 * 165.97949 * 5 4 3 7 7 C 1.39029 * 120.00019 * 345.98356 * 5 4 3 8 8 N 1.31377 * 120.00169 * 36.93646 * 7 5 4 9 9 Si 1.86797 * 119.99757 * 216.94020 * 7 5 4 10 10 H 1.48505 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47196 * 119.99709 * 9 7 5 12 12 H 1.48498 * 109.47084 * 239.99420 * 9 7 5 13 13 C 1.34772 * 120.00203 * 108.57561 * 4 3 2 14 14 O 1.21617 * 120.00437 * 186.49154 * 13 4 3 15 15 C 1.47503 * 119.99932 * 6.49186 * 13 4 3 16 16 C 1.39793 * 120.09182 * 141.01457 * 15 13 4 17 17 C 1.37693 * 119.90312 * 180.02562 * 16 15 13 18 18 C 1.39007 * 120.09440 * 0.02562 * 17 16 15 19 19 O 1.35714 * 119.90669 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99981 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47095 * 180.02562 * 20 19 18 22 22 F 1.39910 * 109.46505 * 60.00491 * 21 20 19 23 23 F 1.39892 * 109.47161 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47500 * 300.00778 * 21 20 19 25 25 C 1.39013 * 120.18838 * 0.23924 * 18 17 16 26 26 C 1.37687 * 120.09156 * 359.48129 * 25 18 17 27 27 H 1.08997 * 109.47411 * 358.27874 * 3 2 1 28 28 H 1.09008 * 109.46982 * 238.27897 * 3 2 1 29 29 H 0.97000 * 119.99889 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.04796 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.94937 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47237 * 300.00582 * 20 19 18 33 33 H 1.08997 * 109.46479 * 60.00914 * 20 19 18 34 34 H 1.08002 * 119.95221 * 179.72258 * 25 18 17 35 35 H 1.08009 * 120.04713 * 180.23161 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.6554 -1.2163 5 6 2.9685 0.0311 -2.4280 6 1 3.1134 0.5894 -3.3410 7 6 2.6522 -1.3216 -2.4831 8 7 1.8156 -1.8367 -1.6109 9 14 3.4169 -2.4067 -3.7973 10 1 4.3177 -1.5907 -4.6506 11 1 4.1963 -3.4927 -3.1507 12 1 2.3441 -2.9992 -4.6359 13 6 3.6707 1.8722 -1.1424 14 8 3.9685 2.4670 -2.1606 15 6 3.9384 2.4827 0.1734 16 6 5.1178 3.2029 0.3850 17 6 5.3640 3.7707 1.6150 18 6 4.4422 3.6282 2.6456 19 8 4.6891 4.1890 3.8566 20 6 3.6995 4.0043 4.8709 21 6 4.1495 4.7029 6.1555 22 9 4.3153 6.0701 5.9092 23 9 3.1811 4.5216 7.1487 24 9 5.3638 4.1555 6.5834 25 6 3.2708 2.9082 2.4411 26 6 3.0140 2.3420 1.2126 27 1 2.9718 -1.0263 0.0309 28 1 2.9711 0.5412 0.8742 29 1 1.5952 -2.7805 -1.6492 30 1 5.8350 3.3131 -0.4149 31 1 6.2751 4.3269 1.7794 32 1 2.7536 4.4312 4.5377 33 1 3.5701 2.9391 5.0624 34 1 2.5593 2.7960 3.2459 35 1 2.1019 1.7859 1.0534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299710955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:04 Heat of formation + Delta-G solvation = -149.384479 kcal Electronic energy + Delta-G solvation = -27082.227880 eV Core-core repulsion = 22438.966861 eV Total energy + Delta-G solvation = -4643.261020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.14474 -48.69198 -48.62559 -41.64256 -40.56110 -38.19605 -37.69741 -36.13810 -34.08246 -32.43552 -31.73565 -30.48283 -29.18132 -26.99687 -25.06735 -24.07434 -23.26796 -21.24574 -20.05400 -19.96989 -19.67825 -18.84506 -18.81421 -18.35318 -17.95337 -16.95591 -16.90272 -16.53300 -16.00934 -15.84787 -15.64433 -15.46796 -15.43916 -15.07588 -15.06374 -14.79160 -14.77931 -14.68319 -14.31930 -14.15285 -14.05884 -13.60643 -13.49648 -13.39483 -13.07505 -13.03759 -12.78518 -12.46724 -12.35492 -12.12081 -12.02557 -11.72370 -10.88335 -10.55527 -10.17477 -10.00612 -9.28556 -8.62492 -5.90430 0.01259 0.30324 1.21011 1.33932 1.46222 1.58620 1.79929 2.02172 2.03340 2.19867 2.32673 2.68604 2.70087 2.81612 2.95445 3.14470 3.31626 3.59840 3.67405 3.84814 3.90195 4.00282 4.02776 4.22914 4.39173 4.42615 4.60202 4.85956 4.95576 5.07775 5.18678 5.41474 5.46664 5.56071 5.96991 6.15407 6.34050 6.98227 7.05039 7.27392 7.87224 8.42684 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.002829 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.721016 B = 9895.059042 C =10548.112732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.264 3.736 3 C 0.195 3.805 4 N -0.440 5.440 5 C -0.370 4.370 6 H 0.081 0.919 7 C 0.029 3.971 8 N -0.858 5.858 9 Si 0.971 3.029 10 H -0.275 1.275 11 H -0.258 1.258 12 H -0.283 1.283 13 C 0.481 3.519 14 O -0.621 6.621 15 C -0.152 4.152 16 C -0.038 4.038 17 C -0.139 4.139 18 C 0.141 3.859 19 O -0.307 6.307 20 C 0.004 3.996 21 C 0.467 3.533 22 F -0.184 7.184 23 F -0.170 7.170 24 F -0.183 7.183 25 C -0.194 4.194 26 C -0.076 4.076 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.282 0.718 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 7.288 18.683 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.053 4.053 3 C 0.069 3.931 4 N -0.159 5.159 5 C -0.496 4.496 6 H 0.099 0.901 7 C -0.178 4.178 8 N -0.494 5.494 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.183 1.183 12 H -0.210 1.210 13 C 0.273 3.727 14 O -0.508 6.508 15 C -0.155 4.155 16 C -0.057 4.057 17 C -0.158 4.158 18 C 0.096 3.904 19 O -0.221 6.221 20 C -0.072 4.072 21 C 0.413 3.587 22 F -0.166 7.166 23 F -0.152 7.152 24 F -0.165 7.165 25 C -0.212 4.212 26 C -0.095 4.095 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.187 0.813 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.809 7.477 18.329 20.371 hybrid contribution 0.230 -0.720 -0.980 1.237 sum 5.039 6.757 17.349 19.289 Atomic orbital electron populations 1.80887 1.14368 1.12090 1.10722 1.29244 0.95348 0.90039 0.90683 1.19866 0.80866 1.02510 0.89832 1.43720 1.49627 1.15812 1.06693 1.19434 1.51930 0.92616 0.85597 0.90082 1.25819 0.93912 0.97483 1.00540 1.70014 1.24802 1.15425 1.39129 0.85272 0.78751 0.78038 0.78497 1.20016 1.18280 1.20952 1.18475 0.83211 0.81621 0.89402 1.90603 1.59208 1.62621 1.38385 1.19889 0.98465 1.03890 0.93283 1.21004 0.95021 0.92935 0.96766 1.20487 1.00966 1.03909 0.90392 1.19023 0.94173 0.93069 0.84127 1.85952 1.44901 1.72205 1.19016 1.24163 0.93866 1.05051 0.84149 1.20153 0.75135 0.77271 0.86156 1.93224 1.95390 1.33721 1.94261 1.93237 1.63137 1.95089 1.63689 1.93224 1.46498 1.85368 1.91363 1.21377 0.98404 1.02398 0.99025 1.21368 0.98451 0.97422 0.92242 0.86514 0.83602 0.90668 0.84677 0.82400 0.84754 0.84295 0.81286 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.09 18.54 20.01 0.37 -22.72 16 2 C 0.26 11.30 11.69 89.44 1.05 12.34 16 3 C 0.19 7.47 4.80 84.57 0.41 7.87 16 4 N -0.44 -20.61 2.68 -649.07 -1.74 -22.35 16 5 C -0.37 -19.51 9.10 84.09 0.77 -18.74 16 6 H 0.08 4.74 7.43 -2.91 -0.02 4.72 16 7 C 0.03 1.41 5.01 84.95 0.43 1.83 16 8 N -0.86 -40.97 9.04 21.68 0.20 -40.77 16 9 Si 0.97 39.29 29.68 68.60 2.04 41.32 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.48 22.06 7.29 86.69 0.63 22.69 16 14 O -0.62 -33.68 16.53 -4.09 -0.07 -33.74 16 15 C -0.15 -5.16 5.40 -20.08 -0.11 -5.27 16 16 C -0.04 -1.09 9.62 22.52 0.22 -0.87 16 17 C -0.14 -3.06 9.97 22.33 0.22 -2.84 16 18 C 0.14 2.78 6.70 22.64 0.15 2.93 16 19 O -0.31 -5.15 10.01 -90.35 -0.90 -6.05 16 20 C 0.00 0.04 4.69 71.98 0.34 0.38 16 21 C 0.47 6.24 3.32 71.98 0.24 6.48 16 22 F -0.18 -3.11 17.26 44.97 0.78 -2.34 16 23 F -0.17 -2.20 17.32 44.97 0.78 -1.42 16 24 F -0.18 -3.02 17.26 44.97 0.78 -2.25 16 25 C -0.19 -3.72 9.01 22.33 0.20 -3.52 16 26 C -0.08 -2.07 7.34 22.52 0.17 -1.91 16 27 H 0.12 4.53 6.60 -2.39 -0.02 4.51 16 28 H 0.15 4.36 3.79 -2.38 -0.01 4.35 16 29 H 0.28 12.69 8.31 -92.71 -0.77 11.92 16 30 H 0.14 3.94 8.05 -2.91 -0.02 3.91 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.13 0.80 7.66 -2.39 -0.02 0.78 16 33 H 0.14 0.72 7.64 -2.39 -0.02 0.70 16 34 H 0.17 1.89 6.28 -2.91 -0.02 1.87 16 35 H 0.13 3.79 4.63 -2.91 -0.01 3.77 16 Total: -1.00 -68.49 322.00 8.11 -60.38 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.19 Total: 8.57 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 4.70 Total: 21.38 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.17 Total: -85.85 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.97 Total: -39.80 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 2.33 Total: -6.01 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.04 Total: 41.32 kcal Total: -68.49 8.11 -60.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299710955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.008 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds