Wall clock time and date at job start Tue Mar 31 2020 15:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39619 * 119.95964 * 212.95415 * 3 2 1 5 5 C 1.37997 * 120.03745 * 179.76649 * 4 3 2 6 6 F 1.35097 * 120.02122 * 180.28225 * 5 4 3 7 7 C 1.39944 * 119.96125 * 0.50812 * 5 4 3 8 8 C 1.47584 * 120.03854 * 179.76434 * 7 5 4 9 9 O 1.21595 * 120.00014 * 269.98437 * 8 7 5 10 10 N 1.34769 * 119.99969 * 89.98683 * 8 7 5 11 11 C 1.39859 * 120.00293 * 174.88630 * 10 8 7 12 12 C 1.39307 * 119.95194 * 145.61066 * 11 10 8 13 13 C 1.38478 * 120.42811 * 179.97438 * 12 11 10 14 14 C 1.37690 * 120.32580 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.88469 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20394 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00373 * 25.23138 * 16 15 14 18 18 C 1.39933 * 119.99666 * 205.23991 * 16 15 14 19 19 N 1.30830 * 120.00097 * 16.70800 * 18 16 15 20 20 Si 1.86797 * 119.99750 * 196.71392 * 18 16 15 21 21 H 1.48499 * 109.47117 * 94.96249 * 20 18 16 22 22 H 1.48501 * 109.47027 * 214.95950 * 20 18 16 23 23 H 1.48499 * 109.47183 * 334.96079 * 20 18 16 24 24 C 1.38268 * 119.94693 * 325.34048 * 11 10 8 25 25 C 1.39947 * 119.92344 * 359.74956 * 7 5 4 26 26 F 1.35096 * 120.02111 * 180.02562 * 25 7 5 27 27 C 1.37998 * 119.95728 * 359.97438 * 25 7 5 28 28 H 1.08007 * 119.98005 * 0.02932 * 4 3 2 29 29 H 0.97002 * 120.00002 * 354.88477 * 10 8 7 30 30 H 1.07999 * 119.78826 * 359.95768 * 12 11 10 31 31 H 1.08001 * 119.83838 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.05889 * 179.97438 * 14 13 12 33 33 H 0.97002 * 119.99825 * 180.02562 * 19 18 16 34 34 H 1.07992 * 120.15865 * 359.97438 * 24 11 10 35 35 H 1.08005 * 119.97849 * 179.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2648 1.0160 0.6580 5 6 4.6448 1.0155 0.6631 6 9 5.3186 1.9950 1.3047 7 6 5.3458 0.0025 -0.0008 8 6 6.8216 0.0032 -0.0008 9 8 7.4293 0.5803 -0.8818 10 7 7.4958 -0.6358 0.9757 11 6 8.8903 -0.7268 0.9186 12 6 9.6380 -0.6952 2.0936 13 6 11.0191 -0.7851 2.0486 14 6 11.6689 -0.9073 0.8408 15 6 10.9267 -0.9406 -0.3546 16 6 11.5871 -1.0654 -1.5988 17 1 12.5605 -1.5303 -1.6493 18 6 10.9793 -0.5862 -2.7646 19 7 9.9788 0.2529 -2.6834 20 14 11.5963 -1.1449 -4.4369 21 1 10.7809 -2.2936 -4.9069 22 1 11.4803 -0.0260 -5.4064 23 1 13.0181 -1.5592 -4.3269 24 6 9.5242 -0.8536 -0.3036 25 6 4.6457 -1.0115 -0.6644 26 9 5.3205 -1.9907 -1.3054 27 6 3.2658 -1.0110 -0.6626 28 1 2.7234 1.7999 1.1669 29 1 7.0139 -1.0326 1.7181 30 1 9.1374 -0.5997 3.0457 31 1 11.5895 -0.7592 2.9653 32 1 12.7462 -0.9767 0.8107 33 1 9.5573 0.5848 -3.4915 34 1 8.9452 -0.8830 -1.2147 35 1 2.7252 -1.7931 -1.1749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313459415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:56 Heat of formation + Delta-G solvation = -36.451900 kcal Electronic energy + Delta-G solvation = -26329.732248 eV Core-core repulsion = 22122.137577 eV Total energy + Delta-G solvation = -4207.594671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.36083 -49.31366 -40.11530 -39.09086 -37.20273 -36.66953 -34.35787 -33.21190 -32.06129 -31.04987 -29.56131 -28.38153 -25.62896 -25.23112 -23.42932 -22.00587 -20.93141 -20.01916 -19.80289 -18.15420 -17.89442 -17.20980 -16.90866 -16.44729 -16.16026 -15.73752 -15.60779 -15.42501 -14.86377 -14.71692 -14.33928 -14.26617 -14.11707 -13.91692 -13.75005 -13.06285 -12.84937 -12.80166 -12.58893 -12.40600 -12.22215 -12.10821 -11.59875 -11.23770 -11.08737 -10.77496 -10.53197 -10.23454 -9.75603 -9.54967 -9.37334 -9.33631 -9.05449 -9.03066 -7.38365 -7.00106 -6.58141 -4.29930 -0.16777 0.41772 2.07488 2.13927 2.43970 2.87242 2.92754 3.06955 3.13036 3.15919 3.16600 3.25958 3.41291 3.50916 3.89870 4.00017 4.28080 4.31842 4.59739 4.69285 4.75408 5.21367 5.23069 5.38088 5.43269 5.71029 6.04792 6.18744 6.42518 6.65991 6.88953 6.91440 6.98943 7.12477 7.30809 7.53937 7.72956 7.86639 8.06488 8.18007 8.32588 8.49287 8.76003 8.95254 8.98741 10.28561 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003693 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.735774 B = 7579.487739 C = 8699.424701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.256 3.744 3 C 0.042 3.958 4 C -0.120 4.120 5 C 0.166 3.834 6 F -0.110 7.110 7 C -0.159 4.159 8 C 0.538 3.462 9 O -0.454 6.454 10 N -0.655 5.655 11 C 0.140 3.860 12 C -0.265 4.265 13 C -0.079 4.079 14 C -0.236 4.236 15 C 0.119 3.881 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.760 5.760 20 Si 0.903 3.097 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.156 4.156 25 C 0.169 3.831 26 F -0.108 7.108 27 C -0.119 4.119 28 H 0.159 0.841 29 H 0.398 0.602 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.281 0.719 34 H 0.135 0.865 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -1.273 4.966 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.060 4.060 3 C 0.038 3.962 4 C -0.141 4.141 5 C 0.146 3.854 6 F -0.088 7.088 7 C -0.165 4.165 8 C 0.320 3.680 9 O -0.324 6.324 10 N -0.299 5.299 11 C 0.048 3.952 12 C -0.286 4.286 13 C -0.098 4.098 14 C -0.256 4.256 15 C 0.116 3.884 16 C -0.492 4.492 17 H 0.096 0.904 18 C -0.149 4.149 19 N -0.384 5.384 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.177 4.177 25 C 0.148 3.852 26 F -0.086 7.086 27 C -0.141 4.141 28 H 0.177 0.823 29 H 0.232 0.768 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.302 -0.680 4.128 15.863 hybrid contribution 0.642 -0.287 -0.380 0.799 sum -14.660 -0.967 3.749 15.163 Atomic orbital electron populations 1.81314 1.11615 1.06773 1.07149 1.25215 0.92050 0.94382 0.94401 1.15259 0.84783 0.95995 1.00165 1.21051 0.91781 0.99879 1.01398 1.16948 0.88902 0.86184 0.93386 1.91644 1.80049 1.58815 1.78293 1.20512 0.96620 0.96797 1.02598 1.17738 0.85028 0.81200 0.84075 1.91105 1.67081 1.39773 1.34424 1.43281 1.06892 1.55051 1.24684 1.17552 0.79483 1.02878 0.95270 1.19990 0.93857 1.20050 0.94688 1.20293 0.93256 0.99846 0.96393 1.20993 0.97770 1.14152 0.92702 1.17479 0.91080 0.87425 0.92402 1.19547 1.04006 1.34614 0.90996 0.90373 1.25968 0.94363 0.93255 1.01286 1.69899 1.17501 1.19783 1.31171 0.86386 0.80239 0.79177 0.81442 1.19459 1.20318 1.18657 1.21351 0.94882 1.05982 0.95466 1.16963 0.88890 0.85907 0.93415 1.91664 1.79959 1.58702 1.78239 1.21069 0.91787 1.00085 1.01132 0.82317 0.76846 0.89278 0.89060 0.88927 0.90747 0.84754 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.13 18.54 41.84 0.78 -3.35 16 2 C 0.26 2.09 15.31 -22.47 -0.34 1.75 16 3 C 0.04 0.30 5.73 -106.94 -0.61 -0.31 16 4 C -0.12 -0.89 9.71 -39.15 -0.38 -1.27 16 5 C 0.17 1.81 7.28 -39.03 -0.28 1.53 16 6 F -0.11 -1.41 16.82 2.25 0.04 -1.37 16 7 C -0.16 -2.12 5.64 -104.81 -0.59 -2.71 16 8 C 0.54 10.07 6.24 -12.45 -0.08 10.00 16 9 O -0.45 -10.83 14.87 5.28 0.08 -10.76 16 10 N -0.65 -11.99 5.33 -10.84 -0.06 -12.05 16 11 C 0.14 3.18 6.25 -83.79 -0.52 2.65 16 12 C -0.26 -5.69 9.97 -39.10 -0.39 -6.08 16 13 C -0.08 -1.74 10.02 -39.69 -0.40 -2.14 16 14 C -0.24 -5.79 9.79 -38.83 -0.38 -6.17 16 15 C 0.12 3.21 5.57 -106.85 -0.59 2.62 16 16 C -0.46 -12.39 9.05 -37.74 -0.34 -12.74 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 18 C 0.07 1.84 5.16 -17.34 -0.09 1.76 16 19 N -0.76 -20.48 10.96 55.55 0.61 -19.87 16 20 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.16 -4.09 7.28 -38.68 -0.28 -4.37 16 25 C 0.17 1.91 7.28 -39.03 -0.28 1.62 16 26 F -0.11 -1.48 16.82 2.25 0.04 -1.44 16 27 C -0.12 -0.92 9.71 -39.15 -0.38 -1.30 16 28 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.40 5.60 8.81 -40.82 -0.36 5.24 16 30 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 34 H 0.13 3.76 4.63 -52.49 -0.24 3.52 16 35 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -31.72 334.12 -6.73 -38.45 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -2.27 Total: 6.48 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -5.95 Total: -15.17 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 1.33 Total: -35.26 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.72 -6.73 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313459415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.000 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds