Wall clock time and date at job start Tue Mar 31 2020 15:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39619 * 119.95964 * 212.95415 * 3 2 1 5 5 C 1.37997 * 120.03745 * 179.76649 * 4 3 2 6 6 F 1.35097 * 120.02122 * 180.28225 * 5 4 3 7 7 C 1.39944 * 119.96125 * 0.50812 * 5 4 3 8 8 C 1.47584 * 120.03854 * 179.76434 * 7 5 4 9 9 O 1.21595 * 120.00014 * 269.98437 * 8 7 5 10 10 N 1.34769 * 119.99969 * 89.98683 * 8 7 5 11 11 C 1.39859 * 120.00293 * 174.88630 * 10 8 7 12 12 C 1.39307 * 119.95194 * 145.61066 * 11 10 8 13 13 C 1.38478 * 120.42811 * 179.97438 * 12 11 10 14 14 C 1.37690 * 120.32580 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.88469 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20394 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00373 * 25.23138 * 16 15 14 18 18 C 1.39933 * 119.99666 * 205.23991 * 16 15 14 19 19 N 1.30830 * 120.00097 * 16.70800 * 18 16 15 20 20 Si 1.86797 * 119.99750 * 196.71392 * 18 16 15 21 21 H 1.48499 * 109.47117 * 94.96249 * 20 18 16 22 22 H 1.48501 * 109.47027 * 214.95950 * 20 18 16 23 23 H 1.48499 * 109.47183 * 334.96079 * 20 18 16 24 24 C 1.38268 * 119.94693 * 325.34048 * 11 10 8 25 25 C 1.39947 * 119.92344 * 359.74956 * 7 5 4 26 26 F 1.35096 * 120.02111 * 180.02562 * 25 7 5 27 27 C 1.37998 * 119.95728 * 359.97438 * 25 7 5 28 28 H 1.08007 * 119.98005 * 0.02932 * 4 3 2 29 29 H 0.97002 * 120.00002 * 354.88477 * 10 8 7 30 30 H 1.07999 * 119.78826 * 359.95768 * 12 11 10 31 31 H 1.08001 * 119.83838 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.05889 * 179.97438 * 14 13 12 33 33 H 0.97002 * 119.99825 * 180.02562 * 19 18 16 34 34 H 1.07992 * 120.15865 * 359.97438 * 24 11 10 35 35 H 1.08005 * 119.97849 * 179.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2648 1.0160 0.6580 5 6 4.6448 1.0155 0.6631 6 9 5.3186 1.9950 1.3047 7 6 5.3458 0.0025 -0.0008 8 6 6.8216 0.0032 -0.0008 9 8 7.4293 0.5803 -0.8818 10 7 7.4958 -0.6358 0.9757 11 6 8.8903 -0.7268 0.9186 12 6 9.6380 -0.6952 2.0936 13 6 11.0191 -0.7851 2.0486 14 6 11.6689 -0.9073 0.8408 15 6 10.9267 -0.9406 -0.3546 16 6 11.5871 -1.0654 -1.5988 17 1 12.5605 -1.5303 -1.6493 18 6 10.9793 -0.5862 -2.7646 19 7 9.9788 0.2529 -2.6834 20 14 11.5963 -1.1449 -4.4369 21 1 10.7809 -2.2936 -4.9069 22 1 11.4803 -0.0260 -5.4064 23 1 13.0181 -1.5592 -4.3269 24 6 9.5242 -0.8536 -0.3036 25 6 4.6457 -1.0115 -0.6644 26 9 5.3205 -1.9907 -1.3054 27 6 3.2658 -1.0110 -0.6626 28 1 2.7234 1.7999 1.1669 29 1 7.0139 -1.0326 1.7181 30 1 9.1374 -0.5997 3.0457 31 1 11.5895 -0.7592 2.9653 32 1 12.7462 -0.9767 0.8107 33 1 9.5573 0.5848 -3.4915 34 1 8.9452 -0.8830 -1.2147 35 1 2.7252 -1.7931 -1.1749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313459415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:53 Heat of formation + Delta-G solvation = -55.055134 kcal Electronic energy + Delta-G solvation = -26330.538945 eV Core-core repulsion = 22122.137577 eV Total energy + Delta-G solvation = -4208.401367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -50.29384 -50.27081 -41.43463 -40.17564 -38.87404 -37.52476 -36.11274 -35.01192 -33.05196 -31.81902 -31.44505 -30.06282 -27.22300 -26.60117 -24.23412 -23.57136 -22.69207 -21.42693 -20.83128 -19.75838 -18.83215 -18.71335 -17.76267 -17.71391 -17.21751 -17.05365 -16.66602 -16.56259 -16.48694 -16.33396 -15.71917 -15.54612 -15.07710 -14.83272 -14.73092 -14.67780 -14.52097 -14.06505 -13.60081 -13.51219 -13.47066 -13.15575 -13.02276 -12.97583 -12.84577 -12.61938 -12.21757 -11.96912 -11.55388 -11.20654 -10.88957 -10.79099 -10.36686 -10.09869 -9.29321 -8.81762 -8.45801 -6.30101 -0.98278 -0.33351 0.76942 1.09018 1.36077 1.37013 1.39068 1.46562 1.51171 1.61478 1.99283 2.18201 2.22520 2.39817 2.68192 2.79719 3.10783 3.38014 3.52093 3.63947 3.77969 3.96862 4.40000 4.41561 4.50800 4.61674 4.71212 4.76160 4.88874 5.12633 5.19410 5.25170 5.27185 5.40887 5.79766 5.87782 6.02306 6.16871 6.22557 6.42535 6.54593 6.66753 6.99010 7.06491 7.19812 8.39305 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003693 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.735774 B = 7579.487739 C = 8699.424701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.284 3.716 3 C 0.060 3.940 4 C -0.087 4.087 5 C 0.159 3.841 6 F -0.124 7.124 7 C -0.176 4.176 8 C 0.537 3.463 9 O -0.514 6.514 10 N -0.646 5.646 11 C 0.139 3.861 12 C -0.254 4.254 13 C -0.078 4.078 14 C -0.254 4.254 15 C 0.084 3.916 16 C -0.501 4.501 17 H 0.077 0.923 18 C 0.029 3.971 19 N -0.797 5.797 20 Si 0.977 3.023 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.185 4.185 25 C 0.154 3.846 26 F -0.128 7.128 27 C -0.089 4.089 28 H 0.193 0.807 29 H 0.419 0.581 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.281 0.719 34 H 0.109 0.891 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.128 -1.518 6.338 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.032 4.032 3 C 0.057 3.943 4 C -0.108 4.108 5 C 0.138 3.862 6 F -0.102 7.102 7 C -0.182 4.182 8 C 0.321 3.679 9 O -0.388 6.388 10 N -0.292 5.292 11 C 0.046 3.954 12 C -0.275 4.275 13 C -0.097 4.097 14 C -0.274 4.274 15 C 0.082 3.918 16 C -0.530 4.530 17 H 0.095 0.905 18 C -0.188 4.188 19 N -0.421 5.421 20 Si 0.798 3.202 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.207 4.207 25 C 0.134 3.866 26 F -0.107 7.107 27 C -0.110 4.110 28 H 0.211 0.789 29 H 0.257 0.743 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.603 -0.946 5.555 18.483 hybrid contribution 1.225 -0.198 -0.606 1.381 sum -16.378 -1.144 4.949 17.148 Atomic orbital electron populations 1.81379 1.12615 1.07800 1.08177 1.24945 0.91558 0.93346 0.93355 1.15133 0.84269 0.95522 0.99400 1.21274 0.89999 0.99942 0.99550 1.17005 0.89852 0.85449 0.93849 1.91611 1.80621 1.59335 1.78672 1.20154 0.93126 0.99303 1.05623 1.18495 0.87308 0.79463 0.82589 1.91077 1.69232 1.42106 1.36379 1.43224 1.05458 1.54929 1.25621 1.17717 0.81721 1.01212 0.94725 1.20475 0.93933 1.17416 0.95712 1.20739 0.93902 0.98074 0.96940 1.21218 0.98263 1.14775 0.93137 1.17888 0.91912 0.88455 0.93589 1.19784 1.04589 1.36416 0.92223 0.90531 1.26812 0.94324 0.92752 1.04927 1.70026 1.19012 1.21143 1.31969 0.85280 0.79839 0.78731 0.76386 1.18992 1.19565 1.17822 1.21242 0.94862 1.08506 0.96066 1.17093 0.89956 0.85483 0.94065 1.91616 1.80664 1.59530 1.78853 1.21252 0.89938 1.00290 0.99503 0.78933 0.74315 0.85281 0.85117 0.88326 0.90837 0.87317 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.54 18.54 19.00 0.35 -7.18 16 2 C 0.28 3.51 15.31 88.33 1.35 4.86 16 3 C 0.06 0.63 5.73 -21.37 -0.12 0.51 16 4 C -0.09 -0.96 9.71 22.55 0.22 -0.74 16 5 C 0.16 3.17 7.28 22.63 0.16 3.33 16 6 F -0.12 -3.05 16.82 44.97 0.76 -2.29 16 7 C -0.18 -4.62 5.64 -19.98 -0.11 -4.73 16 8 C 0.54 20.77 6.24 86.71 0.54 21.31 16 9 O -0.51 -26.08 14.87 -4.02 -0.06 -26.14 16 10 N -0.65 -23.84 5.33 -306.46 -1.63 -25.48 16 11 C 0.14 6.42 6.25 38.12 0.24 6.66 16 12 C -0.25 -10.53 9.97 22.58 0.23 -10.30 16 13 C -0.08 -3.33 10.02 22.20 0.22 -3.10 16 14 C -0.25 -12.66 9.79 22.75 0.22 -12.44 16 15 C 0.08 4.77 5.57 -21.31 -0.12 4.65 16 16 C -0.50 -28.33 9.05 23.46 0.21 -28.12 16 17 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 18 C 0.03 1.54 5.16 85.25 0.44 1.98 16 19 N -0.80 -45.65 10.96 21.82 0.24 -45.41 16 20 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 24 C -0.19 -10.24 7.28 22.85 0.17 -10.07 16 25 C 0.15 3.32 7.28 22.63 0.16 3.49 16 26 F -0.13 -3.58 16.82 44.97 0.76 -2.83 16 27 C -0.09 -1.08 9.71 22.55 0.22 -0.86 16 28 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.42 11.39 8.81 -92.71 -0.82 10.58 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 32 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 34 H 0.11 6.55 4.63 -2.91 -0.01 6.54 16 35 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -75.64 334.12 6.86 -68.78 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.38 Total: 21.31 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.03 Total: -23.59 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.04 Total: -78.07 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.51 Total: -5.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -75.64 6.86 -68.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313459415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.729 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds