Wall clock time and date at job start Tue Mar 31 2020 14:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39624 * 120.14830 * 191.14097 * 3 2 1 5 5 C 1.37948 * 119.84542 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15190 * 0.02562 * 5 4 3 7 7 S 1.76192 * 119.84481 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40667 * 340.73337 * 7 6 5 9 9 O 1.42105 * 106.40114 * 207.81769 * 7 6 5 10 10 N 1.65596 * 107.21884 * 94.27729 * 7 6 5 11 11 C 1.39677 * 120.00015 * 297.17557 * 10 7 6 12 12 C 1.39337 * 119.95270 * 312.77834 * 11 10 7 13 13 C 1.38477 * 120.42157 * 179.71462 * 12 11 10 14 14 C 1.37689 * 120.32701 * 0.56655 * 13 12 11 15 15 C 1.40742 * 119.89281 * 359.71838 * 14 13 12 16 16 C 1.41408 * 120.20973 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00295 * 151.12443 * 16 15 14 18 18 C 1.39931 * 119.99943 * 331.12997 * 16 15 14 19 19 N 1.30826 * 120.00368 * 163.55596 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 343.54991 * 18 16 15 21 21 H 1.48500 * 109.47297 * 95.29575 * 20 18 16 22 22 H 1.48506 * 109.47237 * 215.30078 * 20 18 16 23 23 H 1.48499 * 109.47122 * 335.29868 * 20 18 16 24 24 C 1.38284 * 119.95067 * 133.05650 * 11 10 7 25 25 C 1.38362 * 120.30231 * 0.23431 * 6 5 4 26 26 C 1.37947 * 120.15145 * 359.48297 * 25 6 5 27 27 H 1.08001 * 120.07654 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92133 * 180.02562 * 5 4 3 29 29 H 0.97011 * 119.99939 * 117.17942 * 10 7 6 30 30 H 1.07998 * 119.78579 * 359.97438 * 12 11 10 31 31 H 1.08004 * 119.83793 * 180.25898 * 13 12 11 32 32 H 1.08004 * 120.05430 * 179.74294 * 14 13 12 33 33 H 0.97006 * 120.00238 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.16406 * 359.97438 * 24 11 10 35 35 H 1.07999 * 119.92079 * 179.73062 * 25 6 5 36 36 H 1.08004 * 120.07642 * 180.25627 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1856 0.2333 5 6 4.6482 1.1791 0.2314 6 6 5.3374 0.0022 -0.0016 7 16 7.0993 0.0034 -0.0029 8 8 7.4997 1.3532 -0.1953 9 8 7.5007 -1.0560 -0.8608 10 7 7.5910 -0.4175 1.5214 11 6 7.2703 0.3983 2.6088 12 6 7.4733 1.7745 2.5298 13 6 7.1533 2.5931 3.5999 14 6 6.6413 2.0541 4.7588 15 6 6.4363 0.6651 4.8555 16 6 5.9104 0.1044 6.0424 17 1 5.3301 -0.8054 5.9989 18 6 6.1417 0.7284 7.2733 19 7 5.4117 0.4155 8.3128 20 14 7.4930 2.0084 7.4321 21 1 6.9126 3.3647 7.2621 22 1 8.1196 1.9027 8.7743 23 1 8.5210 1.7753 6.3862 24 6 6.7571 -0.1617 3.7644 25 6 4.6493 -1.1745 -0.2388 26 6 3.2699 -1.1836 -0.2339 27 1 2.7320 2.1050 0.4148 28 1 5.1915 2.0949 0.4121 29 1 8.1018 -1.2307 1.6591 30 1 7.8790 2.2060 1.6267 31 1 7.3107 3.6591 3.5268 32 1 6.3972 2.6962 5.5922 33 1 5.5723 0.8479 9.1662 34 1 6.6030 -1.2287 3.8283 35 1 5.1935 -2.0888 -0.4242 36 1 2.7340 -2.1036 -0.4152 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313461536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:34 Heat of formation + Delta-G solvation = 6.317057 kcal Electronic energy + Delta-G solvation = -24497.072912 eV Core-core repulsion = 20845.173229 eV Total energy + Delta-G solvation = -3651.899683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65423 -38.39383 -37.16956 -36.71225 -35.85564 -34.91264 -33.24348 -31.90903 -31.45070 -30.42901 -28.38221 -25.27181 -24.72526 -23.17346 -21.69318 -21.04022 -19.58329 -19.27159 -18.25117 -17.65877 -17.32302 -16.23093 -15.99876 -15.48477 -15.01721 -14.82041 -14.60245 -14.35154 -14.26317 -13.98442 -13.87207 -13.10698 -13.03289 -12.86206 -12.77171 -12.73712 -12.52345 -12.24243 -12.11388 -12.04742 -11.52457 -11.44658 -11.13940 -11.05874 -10.80873 -10.75784 -10.21760 -9.81942 -9.63799 -9.55411 -9.35654 -9.22247 -7.85342 -7.50835 -7.05278 -4.63173 0.00955 0.43479 1.01447 2.34394 2.40517 2.44364 2.48008 3.04058 3.04162 3.15821 3.24947 3.41728 3.52288 3.74135 3.89119 4.23059 4.34612 4.52675 4.64018 4.96366 5.15396 5.21426 5.25499 5.60416 5.64151 5.65733 5.79396 5.89338 5.98986 6.25431 6.38013 6.41343 6.54292 6.67468 6.88009 7.08048 7.13406 7.30875 7.50330 7.55646 7.72893 7.97231 8.22765 8.48974 8.67115 9.96664 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.004535 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.957271 B = 6173.095107 C = 7681.869120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.251 3.749 3 C 0.025 3.975 4 C -0.090 4.090 5 C -0.007 4.007 6 C -0.647 4.647 7 S 2.692 3.308 8 O -0.944 6.944 9 O -0.963 6.963 10 N -1.049 6.049 11 C 0.159 3.841 12 C -0.267 4.267 13 C -0.062 4.062 14 C -0.240 4.240 15 C 0.102 3.898 16 C -0.444 4.444 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.806 5.806 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.292 1.292 23 H -0.241 1.241 24 C -0.211 4.211 25 C -0.019 4.019 26 C -0.095 4.095 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.421 0.579 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.287 0.713 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -0.661 -12.912 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.064 4.064 3 C 0.021 3.979 4 C -0.112 4.112 5 C -0.026 4.026 6 C -0.733 4.733 7 S 2.783 3.217 8 O -0.934 6.934 9 O -0.954 6.954 10 N -0.802 5.802 11 C 0.065 3.935 12 C -0.289 4.289 13 C -0.081 4.081 14 C -0.260 4.260 15 C 0.098 3.902 16 C -0.472 4.472 17 H 0.109 0.891 18 C -0.136 4.136 19 N -0.429 5.429 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.220 1.220 23 H -0.164 1.164 24 C -0.234 4.234 25 C -0.039 4.039 26 C -0.116 4.116 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.257 0.743 30 H 0.148 0.852 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.167 0.833 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.647 -0.376 -13.431 13.452 hybrid contribution 0.296 0.011 0.867 0.916 sum -0.351 -0.364 -12.564 12.575 Atomic orbital electron populations 1.81263 1.11915 1.07085 1.07656 1.25671 0.92619 0.93985 0.94171 1.16267 0.84380 0.95573 1.01632 1.21331 0.94358 0.97197 0.98276 1.20998 0.93978 0.97328 0.90273 1.31233 1.27987 1.00052 1.14050 1.02129 0.73594 0.73955 0.72072 1.93573 1.80018 1.35554 1.84232 1.93583 1.81444 1.56844 1.63495 1.52948 1.67326 1.36017 1.23911 1.17179 0.99721 0.89348 0.87262 1.21005 1.14220 0.91892 1.01778 1.20493 0.96810 0.97786 0.93015 1.21126 1.11391 0.95186 0.98259 1.17553 0.88894 0.90904 0.92877 1.19495 1.28201 1.09921 0.89591 0.89108 1.26184 0.96015 0.96044 0.95377 1.69677 1.33430 1.37570 1.02257 0.86294 0.82148 0.79968 0.77618 1.19633 1.21967 1.16421 1.20950 1.08986 0.98585 0.94900 1.20832 0.94052 0.96764 0.92215 1.21246 0.94239 0.97000 0.99164 0.83871 0.82634 0.74280 0.85250 0.88062 0.88096 0.90299 0.87596 0.83339 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.52 18.54 41.84 0.78 -4.75 16 2 C 0.25 2.92 15.33 -22.47 -0.34 2.58 16 3 C 0.02 0.26 5.73 -106.93 -0.61 -0.35 16 4 C -0.09 -0.95 9.76 -39.17 -0.38 -1.33 16 5 C -0.01 -0.08 9.51 -39.64 -0.38 -0.45 16 6 C -0.65 -7.86 5.87 -39.49 -0.23 -8.09 16 7 S 2.69 36.29 5.65 -107.50 -0.61 35.68 16 8 O -0.94 -14.71 14.26 -57.17 -0.82 -15.52 16 9 O -0.96 -13.93 17.37 -57.17 -0.99 -14.92 16 10 N -1.05 -14.86 5.76 32.37 0.19 -14.68 16 11 C 0.16 2.85 6.13 -83.86 -0.51 2.33 16 12 C -0.27 -4.96 9.21 -39.08 -0.36 -5.32 16 13 C -0.06 -1.21 10.01 -39.69 -0.40 -1.61 16 14 C -0.24 -5.24 7.07 -38.84 -0.27 -5.52 16 15 C 0.10 2.33 5.15 -106.85 -0.55 1.78 16 16 C -0.44 -11.12 9.59 -37.74 -0.36 -11.48 16 17 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 18 C 0.08 2.05 5.43 -17.35 -0.09 1.96 16 19 N -0.81 -20.45 13.93 55.55 0.77 -19.67 16 20 Si 0.91 19.58 24.43 -169.99 -4.15 15.43 16 21 H -0.27 -5.62 6.71 56.52 0.38 -5.24 16 22 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.24 -5.25 6.72 56.52 0.38 -4.87 16 24 C -0.21 -4.28 9.71 -38.67 -0.38 -4.65 16 25 C -0.02 -0.20 9.50 -39.64 -0.38 -0.58 16 26 C -0.10 -0.91 9.76 -39.17 -0.38 -1.29 16 27 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.16 1.76 7.51 -52.49 -0.39 1.36 16 29 H 0.42 4.90 8.96 -34.47 -0.31 4.59 16 30 H 0.13 2.29 5.74 -52.49 -0.30 1.99 16 31 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.10 2.22 4.46 -52.48 -0.23 1.99 16 33 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.15 1.24 7.70 -52.49 -0.40 0.84 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -29.67 331.19 -8.41 -38.08 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -2.93 Total: 7.37 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -5.63 Total: -32.02 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 1.74 Total: -39.10 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.81 Total: -30.45 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.15 Total: 15.43 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.61 Total: 35.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.67 -8.41 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313461536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.398 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds