Wall clock time and date at job start Tue Mar 31 2020 14:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39624 * 120.14830 * 191.14097 * 3 2 1 5 5 C 1.37948 * 119.84542 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15190 * 0.02562 * 5 4 3 7 7 S 1.76192 * 119.84481 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40667 * 340.73337 * 7 6 5 9 9 O 1.42105 * 106.40114 * 207.81769 * 7 6 5 10 10 N 1.65596 * 107.21884 * 94.27729 * 7 6 5 11 11 C 1.39677 * 120.00015 * 297.17557 * 10 7 6 12 12 C 1.39337 * 119.95270 * 312.77834 * 11 10 7 13 13 C 1.38477 * 120.42157 * 179.71462 * 12 11 10 14 14 C 1.37689 * 120.32701 * 0.56655 * 13 12 11 15 15 C 1.40742 * 119.89281 * 359.71838 * 14 13 12 16 16 C 1.41408 * 120.20973 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00295 * 151.12443 * 16 15 14 18 18 C 1.39931 * 119.99943 * 331.12997 * 16 15 14 19 19 N 1.30826 * 120.00368 * 163.55596 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 343.54991 * 18 16 15 21 21 H 1.48500 * 109.47297 * 95.29575 * 20 18 16 22 22 H 1.48506 * 109.47237 * 215.30078 * 20 18 16 23 23 H 1.48499 * 109.47122 * 335.29868 * 20 18 16 24 24 C 1.38284 * 119.95067 * 133.05650 * 11 10 7 25 25 C 1.38362 * 120.30231 * 0.23431 * 6 5 4 26 26 C 1.37947 * 120.15145 * 359.48297 * 25 6 5 27 27 H 1.08001 * 120.07654 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92133 * 180.02562 * 5 4 3 29 29 H 0.97011 * 119.99939 * 117.17942 * 10 7 6 30 30 H 1.07998 * 119.78579 * 359.97438 * 12 11 10 31 31 H 1.08004 * 119.83793 * 180.25898 * 13 12 11 32 32 H 1.08004 * 120.05430 * 179.74294 * 14 13 12 33 33 H 0.97006 * 120.00238 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.16406 * 359.97438 * 24 11 10 35 35 H 1.07999 * 119.92079 * 179.73062 * 25 6 5 36 36 H 1.08004 * 120.07642 * 180.25627 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1856 0.2333 5 6 4.6482 1.1791 0.2314 6 6 5.3374 0.0022 -0.0016 7 16 7.0993 0.0034 -0.0029 8 8 7.4997 1.3532 -0.1953 9 8 7.5007 -1.0560 -0.8608 10 7 7.5910 -0.4175 1.5214 11 6 7.2703 0.3983 2.6088 12 6 7.4733 1.7745 2.5298 13 6 7.1533 2.5931 3.5999 14 6 6.6413 2.0541 4.7588 15 6 6.4363 0.6651 4.8555 16 6 5.9104 0.1044 6.0424 17 1 5.3301 -0.8054 5.9989 18 6 6.1417 0.7284 7.2733 19 7 5.4117 0.4155 8.3128 20 14 7.4930 2.0084 7.4321 21 1 6.9126 3.3647 7.2621 22 1 8.1196 1.9027 8.7743 23 1 8.5210 1.7753 6.3862 24 6 6.7571 -0.1617 3.7644 25 6 4.6493 -1.1745 -0.2388 26 6 3.2699 -1.1836 -0.2339 27 1 2.7320 2.1050 0.4148 28 1 5.1915 2.0949 0.4121 29 1 8.1018 -1.2307 1.6591 30 1 7.8790 2.2060 1.6267 31 1 7.3107 3.6591 3.5268 32 1 6.3972 2.6962 5.5922 33 1 5.5723 0.8479 9.1662 34 1 6.6030 -1.2287 3.8283 35 1 5.1935 -2.0888 -0.4242 36 1 2.7340 -2.1036 -0.4152 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313461536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:33 Heat of formation + Delta-G solvation = -12.353167 kcal Electronic energy + Delta-G solvation = -24497.882514 eV Core-core repulsion = 20845.173229 eV Total energy + Delta-G solvation = -3652.709285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50587 -39.94358 -38.34887 -37.68854 -37.01569 -36.41701 -34.90897 -32.80001 -32.27295 -32.10192 -29.90832 -27.00348 -25.63775 -24.00320 -23.22937 -22.64349 -20.73770 -20.13945 -19.72110 -18.85874 -18.50598 -17.71741 -17.30756 -16.77022 -16.36212 -15.89461 -15.80650 -15.62473 -15.27425 -15.19751 -14.66346 -14.64526 -14.39963 -14.08034 -14.03651 -13.75604 -13.67769 -13.60316 -13.54761 -13.24425 -12.90099 -12.75962 -12.56947 -12.33873 -12.32877 -12.07378 -11.70575 -11.54796 -11.18545 -10.86658 -10.50776 -10.16665 -9.51882 -9.05172 -8.85810 -6.48476 -0.93347 -0.62078 0.20349 0.80168 0.84158 1.32355 1.41614 1.46896 1.51232 1.54815 1.94156 2.15758 2.48724 2.60985 2.62575 2.72999 3.25573 3.50407 3.74679 3.77662 4.15242 4.21538 4.33093 4.44936 4.48021 4.68014 4.76298 4.79952 4.86327 4.93313 4.98600 5.07774 5.09690 5.36203 5.46381 5.59204 5.78733 5.88066 5.97129 6.13187 6.21899 6.30046 6.45577 6.75960 6.87164 8.22127 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.004535 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.957271 B = 6173.095107 C = 7681.869120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.274 3.726 3 C 0.020 3.980 4 C -0.090 4.090 5 C -0.023 4.023 6 C -0.656 4.656 7 S 2.710 3.290 8 O -0.964 6.964 9 O -0.970 6.970 10 N -1.046 6.046 11 C 0.175 3.825 12 C -0.253 4.253 13 C -0.062 4.062 14 C -0.253 4.253 15 C 0.086 3.914 16 C -0.479 4.479 17 H 0.058 0.942 18 C 0.047 3.953 19 N -0.852 5.852 20 Si 0.963 3.037 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.246 1.246 24 C -0.217 4.217 25 C -0.024 4.024 26 C -0.087 4.087 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.433 0.567 30 H 0.146 0.854 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.292 0.708 34 H 0.112 0.888 35 H 0.170 0.830 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -0.014 -15.076 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.041 4.041 3 C 0.016 3.984 4 C -0.111 4.111 5 C -0.042 4.042 6 C -0.745 4.745 7 S 2.803 3.197 8 O -0.954 6.954 9 O -0.960 6.960 10 N -0.799 5.799 11 C 0.080 3.920 12 C -0.275 4.275 13 C -0.081 4.081 14 C -0.273 4.273 15 C 0.082 3.918 16 C -0.509 4.509 17 H 0.076 0.924 18 C -0.167 4.167 19 N -0.479 5.479 20 Si 0.788 3.212 21 H -0.184 1.184 22 H -0.213 1.213 23 H -0.169 1.169 24 C -0.240 4.240 25 C -0.043 4.043 26 C -0.108 4.108 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.272 0.728 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.188 0.812 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.405 0.258 -15.608 15.616 hybrid contribution -0.013 -0.234 1.217 1.239 sum 0.392 0.024 -14.391 14.397 Atomic orbital electron populations 1.81293 1.13009 1.08321 1.09076 1.25724 0.92567 0.92843 0.92999 1.16372 0.83724 0.96204 1.02077 1.21535 0.94054 0.98045 0.97472 1.21125 0.94579 0.97415 0.91083 1.31026 1.26797 1.01130 1.15569 1.01426 0.73835 0.73158 0.71314 1.93538 1.80942 1.36562 1.84321 1.93578 1.82056 1.57049 1.63311 1.52917 1.67749 1.36179 1.23073 1.17074 0.97887 0.89650 0.87368 1.21360 1.12150 0.92069 1.01902 1.20843 0.95583 0.99641 0.92005 1.21219 1.12173 0.94650 0.99285 1.17682 0.89291 0.91924 0.92871 1.19473 1.30315 1.09814 0.91265 0.92372 1.26812 0.97417 0.97594 0.94871 1.69719 1.35364 1.39804 1.02991 0.85524 0.79721 0.78496 0.77509 1.18382 1.21310 1.16887 1.21072 1.08945 0.98930 0.95082 1.21154 0.94563 0.96961 0.91647 1.21574 0.94035 0.97708 0.97460 0.82075 0.82389 0.72826 0.83625 0.84903 0.88501 0.89744 0.86995 0.81246 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.60 18.54 19.01 0.35 -11.25 16 2 C 0.27 5.91 15.33 88.33 1.35 7.27 16 3 C 0.02 0.37 5.73 -21.36 -0.12 0.25 16 4 C -0.09 -1.69 9.76 22.54 0.22 -1.47 16 5 C -0.02 -0.48 9.51 22.23 0.21 -0.27 16 6 C -0.66 -14.27 5.87 22.33 0.13 -14.14 16 7 S 2.71 65.82 5.65 -56.49 -0.32 65.50 16 8 O -0.96 -27.36 14.26 -128.00 -1.83 -29.19 16 9 O -0.97 -25.35 17.37 -128.00 -2.22 -27.58 16 10 N -1.05 -26.86 5.76 -51.49 -0.30 -27.16 16 11 C 0.18 5.87 6.13 38.17 0.23 6.10 16 12 C -0.25 -8.60 9.21 22.59 0.21 -8.40 16 13 C -0.06 -2.23 10.01 22.20 0.22 -2.01 16 14 C -0.25 -10.75 7.07 22.75 0.16 -10.59 16 15 C 0.09 3.94 5.15 -21.31 -0.11 3.83 16 16 C -0.48 -25.00 9.59 23.46 0.22 -24.77 16 17 H 0.06 3.28 8.06 -2.91 -0.02 3.25 16 18 C 0.05 2.41 5.43 85.25 0.46 2.88 16 19 N -0.85 -45.10 13.93 21.82 0.30 -44.80 16 20 Si 0.96 40.45 24.43 68.60 1.68 42.13 16 21 H -0.26 -10.22 6.71 99.48 0.67 -9.56 16 22 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.25 -10.32 6.72 99.48 0.67 -9.65 16 24 C -0.22 -8.60 9.71 22.86 0.22 -8.38 16 25 C -0.02 -0.43 9.50 22.23 0.21 -0.22 16 26 C -0.09 -1.39 9.76 22.54 0.22 -1.17 16 27 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.16 3.21 7.51 -2.91 -0.02 3.19 16 29 H 0.43 8.96 8.96 -96.73 -0.87 8.09 16 30 H 0.15 4.59 5.74 -2.91 -0.02 4.57 16 31 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.10 4.16 4.46 -2.91 -0.01 4.15 16 33 H 0.29 13.97 8.30 -92.70 -0.77 13.20 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.17 2.25 7.70 -2.91 -0.02 2.23 16 36 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -64.42 331.19 1.73 -62.68 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.22 Total: 20.76 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 3.85 Total: -51.11 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: 0.36 Total: -83.21 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -4.05 Total: -56.76 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.68 Total: 42.13 kcal Atomic # 16 Polarization: 65.82 SS G_CDS: -0.32 Total: 65.50 kcal Total: -64.42 1.73 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313461536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.328 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds