Wall clock time and date at job start Tue Mar 31 2020 15:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86803 * 120.00163 * 2 1 4 4 H 1.48499 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46890 * 300.00036 * 3 2 1 6 6 H 1.48499 * 109.46955 * 60.00111 * 3 2 1 7 7 C 1.40209 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 189.70549 * 7 2 1 9 9 C 1.40774 * 120.00048 * 9.70339 * 7 2 1 10 10 C 1.40754 * 120.34392 * 32.20811 * 9 7 2 11 11 C 1.36467 * 120.00490 * 180.29984 * 10 9 7 12 12 C 1.38929 * 120.73139 * 359.71986 * 11 10 9 13 13 C 1.38064 * 120.69813 * 0.02562 * 12 11 10 14 14 C 1.39386 * 119.96301 * 359.97438 * 13 12 11 15 15 C 1.47279 * 120.35736 * 180.02562 * 14 13 12 16 16 N 1.32218 * 126.58609 * 356.26303 * 15 14 13 17 17 C 1.34823 * 105.50051 * 179.97438 * 16 15 14 18 18 C 1.48417 * 126.28751 * 180.02562 * 17 16 15 19 19 C 1.39346 * 120.08534 * 0.26724 * 18 17 16 20 20 C 1.37979 * 119.95041 * 180.29968 * 19 18 17 21 21 C 1.38509 * 120.11722 * 359.70260 * 20 19 18 22 22 F 1.35108 * 119.91567 * 180.02562 * 21 20 19 23 23 C 1.38750 * 120.16975 * 0.02562 * 21 20 19 24 24 F 1.35104 * 119.97528 * 180.02562 * 23 21 20 25 25 C 1.38179 * 120.04806 * 0.02562 * 23 21 20 26 26 N 1.30931 * 107.41470 * 0.25849 * 17 16 15 27 27 O 1.21275 * 110.37674 * 359.54477 * 26 17 16 28 28 H 0.97002 * 120.00055 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99678 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.63040 * 179.74656 * 11 10 9 31 31 H 1.08000 * 119.65323 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.01681 * 180.02562 * 13 12 11 33 33 H 1.08004 * 120.02728 * 0.03018 * 19 18 17 34 34 H 1.08003 * 119.93997 * 179.73100 * 20 19 18 35 35 H 1.07995 * 120.05689 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0078 -1.2143 -0.0005 8 1 3.0762 -1.2210 0.1571 9 6 1.3190 -2.4246 -0.2066 10 6 0.1819 -2.4635 -1.0352 11 6 -0.4842 -3.6393 -1.2252 12 6 -0.0498 -4.8083 -0.6129 13 6 1.0650 -4.8051 0.2016 14 6 1.7673 -3.6202 0.4158 15 6 2.9580 -3.6070 1.2825 16 7 3.4382 -4.6241 1.9774 17 6 4.5272 -4.1450 2.6116 18 6 5.4200 -4.9060 3.5208 19 6 5.1676 -6.2511 3.7831 20 6 5.9958 -6.9542 4.6337 21 6 7.0813 -6.3271 5.2226 22 9 7.8899 -7.0196 6.0544 23 6 7.3405 -4.9894 4.9605 24 9 8.4007 -4.3818 5.5366 25 6 6.5150 -4.2784 4.1106 26 7 4.6495 -2.8838 2.2819 27 8 3.7650 -2.5593 1.5182 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1662 -1.5617 -1.5171 30 1 -1.3584 -3.6614 -1.8590 31 1 -0.5898 -5.7293 -0.7757 32 1 1.3933 -5.7203 0.6717 33 1 4.3219 -6.7417 3.3244 34 1 5.7975 -7.9956 4.8403 35 1 6.7163 -3.2371 3.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319384446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:20 Heat of formation + Delta-G solvation = 17.839611 kcal Electronic energy + Delta-G solvation = -25811.430849 eV Core-core repulsion = 21606.190435 eV Total energy + Delta-G solvation = -4205.240414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.63686 -48.70769 -44.55162 -39.10290 -37.88581 -35.06544 -34.03329 -32.73339 -31.15378 -30.50165 -29.83216 -29.12082 -25.81166 -24.45289 -23.94054 -22.75964 -21.92572 -20.98491 -20.27461 -18.26286 -17.84575 -17.36822 -17.20019 -17.15560 -16.46360 -16.31566 -15.71634 -15.12179 -15.11348 -14.82828 -14.64060 -14.24023 -14.18758 -13.66562 -13.18146 -12.93753 -12.74196 -12.68574 -12.41628 -12.12150 -11.86179 -11.57067 -11.50080 -11.34514 -11.16056 -10.97406 -10.70283 -10.42276 -9.92848 -9.92024 -9.84933 -9.57756 -9.26699 -8.65154 -7.75705 -7.60998 -7.14512 -4.80604 0.43230 0.79221 1.54108 2.43068 2.60515 2.92885 3.00464 3.01526 3.17374 3.48053 3.56413 3.69564 3.71731 3.84871 4.13218 4.31177 4.32964 4.65674 4.84528 4.92174 5.28277 5.33828 5.55703 5.63675 5.74430 5.86357 5.98631 6.12898 6.18351 6.26634 6.47659 6.56896 6.64448 6.70361 6.80395 6.96344 7.18960 7.48083 7.62735 7.73402 7.84538 8.21799 8.39742 8.48614 8.92866 9.76519 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.003209 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.986498 B = 8723.809136 C =10375.725071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.431 4.431 8 H 0.098 0.902 9 C 0.140 3.860 10 C -0.144 4.144 11 C -0.087 4.087 12 C -0.237 4.237 13 C -0.027 4.027 14 C -0.183 4.183 15 C 0.293 3.707 16 N -0.523 5.523 17 C 0.192 3.808 18 C 0.024 3.976 19 C -0.061 4.061 20 C -0.127 4.127 21 C 0.073 3.927 22 F -0.129 7.129 23 C 0.067 3.933 24 F -0.127 7.127 25 C -0.098 4.098 26 N -0.406 5.406 27 O 0.088 5.912 28 H 0.289 0.711 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -6.663 4.272 9.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.116 0.884 9 C 0.135 3.865 10 C -0.163 4.163 11 C -0.106 4.106 12 C -0.257 4.257 13 C -0.047 4.047 14 C -0.188 4.188 15 C 0.086 3.914 16 N -0.259 5.259 17 C -0.079 4.079 18 C 0.021 3.979 19 C -0.081 4.081 20 C -0.145 4.145 21 C 0.052 3.948 22 F -0.107 7.107 23 C 0.046 3.954 24 F -0.106 7.106 25 C -0.119 4.119 26 N -0.119 5.119 27 O 0.030 5.970 28 H 0.101 0.899 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.516 -6.403 4.794 10.317 hybrid contribution 0.438 0.860 0.253 0.998 sum 6.954 -5.543 5.047 10.225 Atomic orbital electron populations 1.69700 1.07844 1.30404 1.31519 1.26083 0.94902 1.02001 0.91653 0.86101 0.81386 0.79718 0.78985 1.17610 1.19254 1.19411 1.20059 0.96748 0.90230 1.38877 0.88428 1.17587 0.90979 0.90687 0.87200 1.21076 0.97790 0.97043 1.00409 1.20653 0.98118 0.93384 0.98450 1.20374 1.00873 0.97573 1.06860 1.20575 0.93497 0.95347 0.95299 1.17213 0.96749 0.96878 1.07994 1.26254 0.92620 0.79543 0.92985 1.72190 1.10457 1.28119 1.15088 1.23301 0.95192 0.89097 1.00260 1.17178 0.92722 0.92594 0.95357 1.21214 0.99068 0.92349 0.95426 1.21020 0.93694 1.01634 0.98197 1.17799 0.92816 0.88966 0.95247 1.91529 1.71518 1.78635 1.69039 1.17384 0.88647 0.90054 0.99282 1.91539 1.53391 1.82928 1.82703 1.21083 0.93464 1.01657 0.95695 1.74747 1.11229 1.15077 1.10829 1.85584 1.28448 1.36959 1.45994 0.89946 0.85845 0.88541 0.88286 0.87490 0.82743 0.82999 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.50 11.02 55.56 0.61 -16.89 16 2 C 0.08 1.69 5.25 -17.30 -0.09 1.60 16 3 Si 0.92 17.09 29.57 -169.99 -5.03 12.06 16 4 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 7 C -0.43 -10.20 8.05 -37.88 -0.30 -10.50 16 8 H 0.10 2.31 5.66 -52.49 -0.30 2.01 16 9 C 0.14 3.32 5.53 -106.53 -0.59 2.73 16 10 C -0.14 -3.24 8.58 -39.27 -0.34 -3.57 16 11 C -0.09 -1.74 9.96 -39.96 -0.40 -2.14 16 12 C -0.24 -4.62 10.03 -39.39 -0.39 -5.02 16 13 C -0.03 -0.57 9.70 -39.22 -0.38 -0.95 16 14 C -0.18 -4.14 5.93 -104.33 -0.62 -4.76 16 15 C 0.29 6.50 7.85 -13.93 -0.11 6.39 16 16 N -0.52 -10.68 10.96 -10.24 -0.11 -10.79 16 17 C 0.19 3.65 7.79 -156.34 -1.22 2.44 16 18 C 0.02 0.36 5.88 -104.89 -0.62 -0.26 16 19 C -0.06 -0.75 9.69 -39.26 -0.38 -1.13 16 20 C -0.13 -1.32 10.01 -39.58 -0.40 -1.71 16 21 C 0.07 0.87 7.31 -39.29 -0.29 0.58 16 22 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 23 C 0.07 0.87 7.30 -39.41 -0.29 0.58 16 24 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 25 C -0.10 -1.37 9.67 -39.20 -0.38 -1.75 16 26 N -0.41 -8.41 11.83 31.27 0.37 -8.04 16 27 O 0.09 1.96 8.36 16.30 0.14 2.10 16 28 H 0.29 5.90 8.29 -40.82 -0.34 5.56 16 29 H 0.12 2.81 6.45 -52.48 -0.34 2.47 16 30 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.11 2.03 7.88 -52.49 -0.41 1.61 16 33 H 0.15 1.83 7.87 -52.48 -0.41 1.42 16 34 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.15 2.12 7.86 -52.49 -0.41 1.71 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -24.69 324.11 -8.12 -32.81 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.28 Total: 4.53 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -6.79 Total: -17.47 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.87 Total: -35.71 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.14 Total: 2.10 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -24.69 -8.12 -32.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319384446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.652 kcal (2) G-P(sol) polarization free energy of solvation -24.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds