Wall clock time and date at job start Tue Mar 31 2020 15:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86803 * 120.00163 * 2 1 4 4 H 1.48499 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46890 * 300.00036 * 3 2 1 6 6 H 1.48499 * 109.46955 * 60.00111 * 3 2 1 7 7 C 1.40209 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 189.70549 * 7 2 1 9 9 C 1.40774 * 120.00048 * 9.70339 * 7 2 1 10 10 C 1.40754 * 120.34392 * 32.20811 * 9 7 2 11 11 C 1.36467 * 120.00490 * 180.29984 * 10 9 7 12 12 C 1.38929 * 120.73139 * 359.71986 * 11 10 9 13 13 C 1.38064 * 120.69813 * 0.02562 * 12 11 10 14 14 C 1.39386 * 119.96301 * 359.97438 * 13 12 11 15 15 C 1.47279 * 120.35736 * 180.02562 * 14 13 12 16 16 N 1.32218 * 126.58609 * 356.26303 * 15 14 13 17 17 C 1.34823 * 105.50051 * 179.97438 * 16 15 14 18 18 C 1.48417 * 126.28751 * 180.02562 * 17 16 15 19 19 C 1.39346 * 120.08534 * 0.26724 * 18 17 16 20 20 C 1.37979 * 119.95041 * 180.29968 * 19 18 17 21 21 C 1.38509 * 120.11722 * 359.70260 * 20 19 18 22 22 F 1.35108 * 119.91567 * 180.02562 * 21 20 19 23 23 C 1.38750 * 120.16975 * 0.02562 * 21 20 19 24 24 F 1.35104 * 119.97528 * 180.02562 * 23 21 20 25 25 C 1.38179 * 120.04806 * 0.02562 * 23 21 20 26 26 N 1.30931 * 107.41470 * 0.25849 * 17 16 15 27 27 O 1.21275 * 110.37674 * 359.54477 * 26 17 16 28 28 H 0.97002 * 120.00055 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99678 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.63040 * 179.74656 * 11 10 9 31 31 H 1.08000 * 119.65323 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.01681 * 180.02562 * 13 12 11 33 33 H 1.08004 * 120.02728 * 0.03018 * 19 18 17 34 34 H 1.08003 * 119.93997 * 179.73100 * 20 19 18 35 35 H 1.07995 * 120.05689 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0078 -1.2143 -0.0005 8 1 3.0762 -1.2210 0.1571 9 6 1.3190 -2.4246 -0.2066 10 6 0.1819 -2.4635 -1.0352 11 6 -0.4842 -3.6393 -1.2252 12 6 -0.0498 -4.8083 -0.6129 13 6 1.0650 -4.8051 0.2016 14 6 1.7673 -3.6202 0.4158 15 6 2.9580 -3.6070 1.2825 16 7 3.4382 -4.6241 1.9774 17 6 4.5272 -4.1450 2.6116 18 6 5.4200 -4.9060 3.5208 19 6 5.1676 -6.2511 3.7831 20 6 5.9958 -6.9542 4.6337 21 6 7.0813 -6.3271 5.2226 22 9 7.8899 -7.0196 6.0544 23 6 7.3405 -4.9894 4.9605 24 9 8.4007 -4.3818 5.5366 25 6 6.5150 -4.2784 4.1106 26 7 4.6495 -2.8838 2.2819 27 8 3.7650 -2.5593 1.5182 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1662 -1.5617 -1.5171 30 1 -1.3584 -3.6614 -1.8590 31 1 -0.5898 -5.7293 -0.7757 32 1 1.3933 -5.7203 0.6717 33 1 4.3219 -6.7417 3.3244 34 1 5.7975 -7.9956 4.8403 35 1 6.7163 -3.2371 3.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319384446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:19 Heat of formation + Delta-G solvation = 7.185323 kcal Electronic energy + Delta-G solvation = -25811.892853 eV Core-core repulsion = 21606.190435 eV Total energy + Delta-G solvation = -4205.702419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.64907 -49.72193 -46.14317 -40.16638 -39.53402 -36.61022 -35.68776 -34.24333 -32.29318 -31.82443 -31.32433 -30.67616 -27.49190 -25.76536 -25.31319 -23.99951 -23.33978 -22.60751 -21.75546 -19.66261 -19.17080 -18.81590 -18.60538 -18.22217 -17.71251 -17.47577 -17.31104 -16.65606 -16.14214 -16.13179 -15.79801 -15.65062 -15.28411 -15.15436 -14.50284 -14.28120 -14.19251 -13.93419 -13.79136 -13.63974 -13.39187 -13.13769 -12.88541 -12.76530 -12.53929 -12.46327 -12.23325 -12.01297 -11.55633 -11.49198 -11.44134 -11.20829 -10.27945 -9.81964 -9.42697 -9.25983 -8.79988 -6.54464 -0.69608 -0.20025 -0.10194 0.93238 1.07575 1.37906 1.48328 1.51331 1.64612 2.09197 2.15985 2.31871 2.33657 2.64385 2.66296 2.99703 3.21623 3.47302 3.58817 3.73710 3.84022 4.22465 4.40323 4.43782 4.52554 4.57821 4.67693 4.73731 4.84558 4.94570 4.99630 5.05585 5.14863 5.17281 5.30401 5.49932 5.52964 5.85296 5.93935 6.08184 6.17996 6.51939 6.69471 6.79849 7.29846 8.14021 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.003209 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.986498 B = 8723.809136 C =10375.725071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.045 3.955 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.253 1.253 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.086 0.914 9 C 0.117 3.883 10 C -0.167 4.167 11 C -0.081 4.081 12 C -0.228 4.228 13 C -0.034 4.034 14 C -0.200 4.200 15 C 0.280 3.720 16 N -0.520 5.520 17 C 0.204 3.796 18 C -0.005 4.005 19 C -0.050 4.050 20 C -0.103 4.103 21 C 0.083 3.917 22 F -0.126 7.126 23 C 0.060 3.940 24 F -0.132 7.132 25 C -0.097 4.097 26 N -0.425 5.425 27 O 0.063 5.937 28 H 0.298 0.702 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.193 0.807 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -8.869 4.918 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.174 4.174 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.177 1.177 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.186 4.186 11 C -0.100 4.100 12 C -0.248 4.248 13 C -0.053 4.053 14 C -0.206 4.206 15 C 0.072 3.928 16 N -0.255 5.255 17 C -0.067 4.067 18 C -0.007 4.007 19 C -0.070 4.070 20 C -0.122 4.122 21 C 0.062 3.938 22 F -0.104 7.104 23 C 0.039 3.961 24 F -0.110 7.110 25 C -0.118 4.118 26 N -0.142 5.142 27 O 0.011 5.989 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.182 0.818 34 H 0.210 0.790 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.429 -8.601 5.416 12.027 hybrid contribution 0.508 1.319 0.143 1.420 sum 6.937 -7.282 5.559 11.492 Atomic orbital electron populations 1.69710 1.08661 1.31528 1.32262 1.26692 0.95553 1.04157 0.91022 0.85258 0.79446 0.76419 0.79488 1.18737 1.17697 1.19047 1.20136 0.96472 0.91410 1.41084 0.89599 1.17885 0.91820 0.91242 0.87795 1.21085 0.98459 0.97843 1.01243 1.21014 0.98387 0.92651 0.97978 1.20800 1.00126 0.98676 1.05154 1.20845 0.93716 0.95181 0.95586 1.17523 0.97290 0.97508 1.08260 1.26435 0.92889 0.80044 0.93435 1.72173 1.10821 1.27577 1.14975 1.23941 0.94698 0.88705 0.99340 1.17256 0.93229 0.93759 0.96480 1.21343 0.99396 0.91035 0.95183 1.21328 0.91783 1.03025 0.96024 1.17923 0.92870 0.88370 0.94658 1.91548 1.71536 1.78425 1.68921 1.17404 0.88562 0.90636 0.99449 1.91528 1.53570 1.83175 1.82758 1.20961 0.93442 1.01494 0.95906 1.74729 1.11533 1.16221 1.11736 1.85569 1.29032 1.37519 1.46813 0.89111 0.86906 0.85475 0.84655 0.85844 0.81844 0.78966 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.15 11.02 21.87 0.24 -36.91 16 2 C 0.05 2.08 5.25 85.34 0.45 2.53 16 3 Si 0.97 36.05 29.57 68.60 2.03 38.08 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.46 -23.00 8.05 23.37 0.19 -22.81 16 8 H 0.09 4.34 5.66 -2.91 -0.02 4.33 16 9 C 0.12 5.74 5.53 -21.10 -0.12 5.62 16 10 C -0.17 -7.62 8.58 22.47 0.19 -7.43 16 11 C -0.08 -3.15 9.96 22.02 0.22 -2.93 16 12 C -0.23 -8.36 10.03 22.39 0.22 -8.13 16 13 C -0.03 -1.35 9.70 22.51 0.22 -1.13 16 14 C -0.20 -9.25 5.93 -19.68 -0.12 -9.37 16 15 C 0.28 12.77 7.85 87.09 0.68 13.46 16 16 N -0.52 -21.24 10.96 -301.99 -3.31 -24.55 16 17 C 0.20 7.83 7.79 137.37 1.07 8.90 16 18 C -0.01 -0.15 5.88 -20.04 -0.12 -0.27 16 19 C -0.05 -1.10 9.69 22.48 0.22 -0.88 16 20 C -0.10 -1.74 10.01 22.27 0.22 -1.52 16 21 C 0.08 1.73 7.31 22.46 0.16 1.89 16 22 F -0.13 -2.66 17.18 44.97 0.77 -1.89 16 23 C 0.06 1.47 7.30 22.38 0.16 1.63 16 24 F -0.13 -3.42 17.18 44.97 0.77 -2.65 16 25 C -0.10 -2.66 9.67 22.51 0.22 -2.44 16 26 N -0.43 -18.26 11.83 -57.34 -0.68 -18.94 16 27 O 0.06 2.94 8.36 68.40 0.57 3.52 16 28 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 29 H 0.11 5.30 6.45 -2.91 -0.02 5.28 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.12 4.46 7.88 -2.91 -0.02 4.43 16 33 H 0.16 3.37 7.87 -2.91 -0.02 3.35 16 34 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.15 4.15 7.86 -2.91 -0.02 4.12 16 Total: -1.00 -55.09 324.11 5.46 -49.63 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.18 Total: 16.60 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.88 Total: -22.89 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.75 Total: -80.40 kcal Atomic # 8 Polarization: 2.94 SS G_CDS: 0.57 Total: 3.52 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 1.54 Total: -4.54 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -55.09 5.46 -49.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319384446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.820 kcal (2) G-P(sol) polarization free energy of solvation -55.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds