Wall clock time and date at job start Tue Mar 31 2020 14:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.53178 * 109.54022 * 299.55937 * 8 6 5 10 10 C 1.53093 * 109.16298 * 183.14788 * 9 8 6 11 11 O 1.42902 * 109.41382 * 57.60871 * 10 9 8 12 12 C 1.42908 * 114.09889 * 298.84347 * 11 10 9 13 13 C 1.53099 * 109.41515 * 61.15581 * 12 11 10 14 14 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 15 15 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93193 * 0.02562 * 15 2 1 17 17 C 1.76192 * 99.99981 * 179.97438 * 16 15 2 18 18 H 1.08001 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.38437 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31813 * 119.99414 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47346 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47307 * 299.99902 * 21 19 17 25 25 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 26 26 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 27 27 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 28 28 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.53895 * 59.82340 * 8 6 5 30 30 H 1.08996 * 109.52597 * 303.05297 * 9 8 6 31 31 H 1.09000 * 109.52208 * 63.25046 * 9 8 6 32 32 H 1.09005 * 109.48091 * 297.63280 * 10 9 8 33 33 H 1.08996 * 109.48483 * 177.58787 * 10 9 8 34 34 H 1.08999 * 109.47984 * 301.17697 * 12 11 10 35 35 H 1.08997 * 109.48523 * 181.13988 * 12 11 10 36 36 H 1.08990 * 109.52031 * 182.48793 * 13 12 11 37 37 H 1.08999 * 109.51806 * 62.29349 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 6.5045 3.8095 -1.2437 10 6 7.5529 4.9249 -1.2685 11 8 8.8602 4.3491 -1.2295 12 6 9.1238 3.5791 -0.0549 13 6 8.1385 2.4096 0.0188 14 16 3.9346 -0.7101 -0.0054 15 6 2.2251 -1.1391 0.0005 16 16 1.5696 -2.7747 0.0006 17 6 3.0664 -3.7042 0.0006 18 1 4.0186 -3.1945 0.0009 19 6 3.0220 -5.0878 0.0001 20 7 1.8598 -5.7098 0.0002 21 14 4.6088 -6.0732 -0.0006 22 1 5.3990 -5.7401 1.2118 23 1 4.2908 -7.5238 -0.0004 24 1 5.3983 -5.7393 -1.2132 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5133 28 1 4.0800 2.9687 -0.0003 29 1 6.5470 3.5682 0.9001 30 1 6.6160 3.1852 -2.1301 31 1 5.5067 4.2479 -1.2287 32 1 7.4151 5.5727 -0.4027 33 1 7.4403 5.5094 -2.1817 34 1 9.0064 4.2092 0.8267 35 1 10.1427 3.1940 -0.0936 36 1 8.3092 1.8468 0.9364 37 1 8.2829 1.7570 -0.8422 38 1 1.8288 -6.6793 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330387596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:38 Heat of formation + Delta-G solvation = -56.551074 kcal Electronic energy + Delta-G solvation = -22784.325665 eV Core-core repulsion = 19265.143767 eV Total energy + Delta-G solvation = -3519.181898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71672 -39.10626 -38.41700 -34.83038 -34.05362 -32.82850 -31.47307 -30.47990 -27.18442 -26.54230 -25.76758 -24.00544 -23.39833 -21.47618 -20.60929 -19.57403 -18.18964 -17.65699 -16.94976 -16.38797 -16.33400 -15.78350 -15.56358 -15.11814 -15.10825 -14.69280 -14.20223 -14.05262 -13.84761 -13.42159 -13.20736 -12.75359 -12.67664 -12.13180 -11.90204 -11.87265 -11.69202 -11.40794 -11.25319 -11.14158 -11.09591 -10.91757 -10.70216 -10.57806 -10.28468 -10.09479 -9.73858 -9.52974 -9.08377 -8.75865 -8.67152 -7.81651 -6.60675 -6.51343 -4.28583 1.36744 1.87279 2.41803 2.52600 2.84621 3.07595 3.12094 3.14928 3.34258 3.52858 3.60310 3.97561 4.18849 4.31240 4.38328 4.59556 4.80970 4.81962 4.88359 5.02771 5.05505 5.14858 5.18394 5.23106 5.31343 5.44985 5.62685 5.73337 5.95134 5.96988 6.13401 6.22082 6.44025 6.48254 6.82114 6.95107 7.15414 7.32244 7.94643 8.03226 8.50321 8.87728 10.45062 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003436 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.901742 B = 8146.460518 C = 9804.416196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.475 5.475 4 C 0.186 3.814 5 N -0.614 5.614 6 C 0.509 3.491 7 O -0.502 6.502 8 C -0.099 4.099 9 C -0.152 4.152 10 C 0.064 3.936 11 O -0.382 6.382 12 C 0.062 3.938 13 C -0.138 4.138 14 S 0.199 5.801 15 C -0.251 4.251 16 S 0.150 5.850 17 C -0.557 4.557 18 H 0.088 0.912 19 C 0.082 3.918 20 N -0.863 5.863 21 Si 0.925 3.075 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.413 0.587 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 18.830 0.143 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.197 5.197 4 C -0.185 4.185 5 N -0.263 5.263 6 C 0.294 3.706 7 O -0.375 6.375 8 C -0.120 4.120 9 C -0.190 4.190 10 C -0.013 4.013 11 O -0.301 6.301 12 C -0.015 4.015 13 C -0.177 4.177 14 S 0.443 5.557 15 C -0.488 4.488 16 S 0.401 5.599 17 C -0.706 4.706 18 H 0.106 0.894 19 C -0.129 4.129 20 N -0.496 5.496 21 Si 0.749 3.251 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.394 17.211 -0.010 19.149 hybrid contribution 0.798 0.320 0.276 0.903 sum 9.192 17.531 0.265 19.797 Atomic orbital electron populations 1.20116 0.88050 1.02102 1.01787 1.19032 0.96697 0.84597 1.12101 1.65814 1.02834 1.32404 1.18601 1.23790 0.89891 0.92952 1.11890 1.42427 1.04477 1.07985 1.71442 1.20798 0.81798 0.91374 0.76599 1.90712 1.77007 1.22482 1.47335 1.21304 0.94882 0.95104 1.00736 1.22268 1.00654 0.98336 0.97700 1.22566 0.82215 0.93934 1.02580 1.87962 1.31839 1.68191 1.42098 1.22640 0.99410 0.91672 0.87791 1.22072 0.91842 0.98662 1.05077 1.85838 1.01796 0.95465 1.72597 1.28776 1.01284 1.06743 1.11967 1.83061 1.10991 0.84384 1.81481 1.23223 0.93568 0.94056 1.59756 0.89402 1.25026 0.98286 0.96652 0.92893 1.70009 1.24431 1.10402 1.44769 0.86081 0.81165 0.78093 0.79721 1.19211 1.20346 1.19194 0.91881 0.91045 0.91952 0.74961 0.87874 0.89932 0.90029 0.92801 0.88337 0.92975 0.88289 0.89696 0.89689 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.00 0.36 -0.71 16 2 C 0.02 0.38 6.73 -83.96 -0.57 -0.18 16 3 N -0.48 -9.47 10.55 -9.78 -0.10 -9.57 16 4 C 0.19 3.53 8.40 -87.19 -0.73 2.80 16 5 N -0.61 -8.67 5.31 -11.78 -0.06 -8.73 16 6 C 0.51 6.97 7.12 -10.98 -0.08 6.89 16 7 O -0.50 -8.96 13.49 5.55 0.07 -8.89 16 8 C -0.10 -0.89 2.61 -91.59 -0.24 -1.13 16 9 C -0.15 -1.14 5.30 -26.59 -0.14 -1.28 16 10 C 0.06 0.43 6.84 37.21 0.25 0.68 16 11 O -0.38 -3.51 10.77 -35.23 -0.38 -3.88 16 12 C 0.06 0.47 6.84 37.21 0.25 0.72 16 13 C -0.14 -1.29 4.73 -26.59 -0.13 -1.42 16 14 S 0.20 4.40 18.35 -107.50 -1.97 2.42 16 15 C -0.25 -5.80 6.67 29.47 0.20 -5.61 16 16 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 17 C -0.56 -15.24 9.26 30.81 0.29 -14.96 16 18 H 0.09 2.39 5.97 -52.49 -0.31 2.07 16 19 C 0.08 2.21 5.49 -17.49 -0.10 2.12 16 20 N -0.86 -23.84 13.22 55.47 0.73 -23.10 16 21 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.25 7.38 -51.93 -0.38 0.86 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.41 4.34 8.34 -40.82 -0.34 4.00 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 38 H 0.28 7.13 8.32 -40.82 -0.34 6.79 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -32.27 342.32 -9.22 -41.50 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.79 Total: -0.13 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.63 Total: -12.06 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.57 Total: -41.41 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.30 Total: -12.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 8.18 SS G_CDS: -4.20 Total: 3.98 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.27 -9.22 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.055 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds