Wall clock time and date at job start Tue Mar 31 2020 14:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.53178 * 109.54022 * 299.55937 * 8 6 5 10 10 C 1.53093 * 109.16298 * 183.14788 * 9 8 6 11 11 O 1.42902 * 109.41382 * 57.60871 * 10 9 8 12 12 C 1.42908 * 114.09889 * 298.84347 * 11 10 9 13 13 C 1.53099 * 109.41515 * 61.15581 * 12 11 10 14 14 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 15 15 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93193 * 0.02562 * 15 2 1 17 17 C 1.76192 * 99.99981 * 179.97438 * 16 15 2 18 18 H 1.08001 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.38437 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31813 * 119.99414 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47346 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47307 * 299.99902 * 21 19 17 25 25 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 26 26 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 27 27 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 28 28 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.53895 * 59.82340 * 8 6 5 30 30 H 1.08996 * 109.52597 * 303.05297 * 9 8 6 31 31 H 1.09000 * 109.52208 * 63.25046 * 9 8 6 32 32 H 1.09005 * 109.48091 * 297.63280 * 10 9 8 33 33 H 1.08996 * 109.48483 * 177.58787 * 10 9 8 34 34 H 1.08999 * 109.47984 * 301.17697 * 12 11 10 35 35 H 1.08997 * 109.48523 * 181.13988 * 12 11 10 36 36 H 1.08990 * 109.52031 * 182.48793 * 13 12 11 37 37 H 1.08999 * 109.51806 * 62.29349 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 6.5045 3.8095 -1.2437 10 6 7.5529 4.9249 -1.2685 11 8 8.8602 4.3491 -1.2295 12 6 9.1238 3.5791 -0.0549 13 6 8.1385 2.4096 0.0188 14 16 3.9346 -0.7101 -0.0054 15 6 2.2251 -1.1391 0.0005 16 16 1.5696 -2.7747 0.0006 17 6 3.0664 -3.7042 0.0006 18 1 4.0186 -3.1945 0.0009 19 6 3.0220 -5.0878 0.0001 20 7 1.8598 -5.7098 0.0002 21 14 4.6088 -6.0732 -0.0006 22 1 5.3990 -5.7401 1.2118 23 1 4.2908 -7.5238 -0.0004 24 1 5.3983 -5.7393 -1.2132 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5133 28 1 4.0800 2.9687 -0.0003 29 1 6.5470 3.5682 0.9001 30 1 6.6160 3.1852 -2.1301 31 1 5.5067 4.2479 -1.2287 32 1 7.4151 5.5727 -0.4027 33 1 7.4403 5.5094 -2.1817 34 1 9.0064 4.2092 0.8267 35 1 10.1427 3.1940 -0.0936 36 1 8.3092 1.8468 0.9364 37 1 8.2829 1.7570 -0.8422 38 1 1.8288 -6.6793 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330387596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:37 Heat of formation + Delta-G solvation = -78.258657 kcal Electronic energy + Delta-G solvation = -22785.266977 eV Core-core repulsion = 19265.143767 eV Total energy + Delta-G solvation = -3520.123210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82047 -40.35105 -39.59487 -36.20850 -34.84977 -34.82434 -32.19509 -31.86360 -28.81927 -27.75543 -27.46201 -24.93300 -24.37327 -22.68428 -21.76505 -20.87469 -19.80904 -19.17545 -18.24239 -17.49460 -17.17525 -17.08397 -16.95162 -16.71747 -16.06628 -15.73187 -15.66727 -15.22723 -14.95956 -14.67180 -14.39258 -14.36764 -13.53326 -13.42353 -13.32444 -13.28917 -13.08299 -12.89449 -12.67768 -12.33573 -12.29099 -12.14063 -12.05223 -11.76759 -11.52231 -11.35027 -11.20605 -10.82549 -10.54864 -10.49614 -10.46209 -9.54477 -8.58969 -8.38392 -6.31404 -0.24948 0.20445 0.81391 1.16708 1.25382 1.34505 1.38495 1.48374 1.64790 2.00195 2.13414 2.80269 2.99234 3.07989 3.29723 3.56619 3.68366 3.75931 3.98415 4.17235 4.29461 4.42434 4.46915 4.59167 4.64985 4.68626 4.77339 4.83921 4.83982 4.95815 5.04046 5.05631 5.10047 5.24119 5.27745 5.46415 5.92804 6.00411 6.28716 6.75242 6.85456 6.85759 8.48629 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003436 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.901742 B = 8146.460518 C = 9804.416196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.226 3.774 5 N -0.601 5.601 6 C 0.509 3.491 7 O -0.541 6.541 8 C -0.088 4.088 9 C -0.149 4.149 10 C 0.062 3.938 11 O -0.406 6.406 12 C 0.066 3.934 13 C -0.139 4.139 14 S 0.153 5.847 15 C -0.282 4.282 16 S 0.100 5.900 17 C -0.578 4.578 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.895 5.895 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.266 1.266 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.436 0.564 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 22.241 0.529 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.203 5.203 4 C -0.147 4.147 5 N -0.253 5.253 6 C 0.297 3.703 7 O -0.416 6.416 8 C -0.109 4.109 9 C -0.187 4.187 10 C -0.015 4.015 11 O -0.325 6.325 12 C -0.011 4.011 13 C -0.178 4.178 14 S 0.397 5.603 15 C -0.517 4.517 16 S 0.348 5.652 17 C -0.726 4.726 18 H 0.098 0.902 19 C -0.171 4.171 20 N -0.530 5.530 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.190 1.190 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.278 0.722 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.385 20.699 0.374 22.730 hybrid contribution 0.596 -0.370 0.141 0.715 sum 9.981 20.329 0.515 22.653 Atomic orbital electron populations 1.20247 0.85637 1.03163 1.03097 1.19714 0.98439 0.84174 1.08136 1.66035 1.02646 1.31274 1.20378 1.24157 0.90254 0.93041 1.07205 1.42622 1.04025 1.07852 1.70823 1.21908 0.81814 0.92163 0.74448 1.90715 1.77449 1.24812 1.48666 1.21425 0.92692 0.93469 1.03268 1.22302 1.02578 0.98124 0.95659 1.22754 0.80668 0.93609 1.04439 1.87944 1.33213 1.68393 1.42920 1.22683 0.98995 0.91075 0.88339 1.22071 0.92865 0.99225 1.03605 1.86056 1.02369 0.98381 1.73466 1.28586 1.01626 1.06039 1.15460 1.82865 1.11139 0.86220 1.84990 1.23415 0.93881 0.94874 1.60414 0.90240 1.25875 1.01387 0.97403 0.92463 1.70087 1.26140 1.10786 1.45967 0.85197 0.77326 0.77349 0.79595 1.18952 1.18697 1.19041 0.90329 0.91400 0.89406 0.72229 0.84077 0.92171 0.87572 0.90272 0.87169 0.90520 0.87824 0.90129 0.92536 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.02 71.24 0.71 -1.37 16 2 C 0.04 1.52 6.73 41.77 0.28 1.80 16 3 N -0.48 -18.19 10.55 -184.87 -1.95 -20.14 16 4 C 0.23 8.25 8.40 179.15 1.50 9.76 16 5 N -0.60 -15.27 5.31 -309.56 -1.64 -16.91 16 6 C 0.51 12.91 7.12 87.66 0.62 13.53 16 7 O -0.54 -19.17 13.49 -3.07 -0.04 -19.21 16 8 C -0.09 -1.29 2.61 -11.42 -0.03 -1.32 16 9 C -0.15 -1.72 5.30 30.68 0.16 -1.56 16 10 C 0.06 0.58 6.84 72.01 0.49 1.08 16 11 O -0.41 -6.33 10.77 -148.98 -1.60 -7.93 16 12 C 0.07 0.81 6.84 72.02 0.49 1.31 16 13 C -0.14 -2.37 4.73 30.68 0.15 -2.23 16 14 S 0.15 6.85 18.35 -56.49 -1.04 5.82 16 15 C -0.28 -13.30 6.67 67.00 0.45 -12.85 16 16 S 0.10 5.28 20.74 -56.49 -1.17 4.10 16 17 C -0.58 -32.95 9.26 67.87 0.63 -32.32 16 18 H 0.08 4.53 5.97 -2.91 -0.02 4.51 16 19 C 0.04 1.99 5.49 84.74 0.46 2.46 16 20 N -0.90 -51.02 13.22 21.59 0.29 -50.74 16 21 Si 0.98 43.49 29.55 68.60 2.03 45.52 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 26 H 0.07 2.35 7.38 -2.39 -0.02 2.33 16 27 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.44 7.29 8.34 -92.71 -0.77 6.52 16 29 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.72 7.70 -2.39 -0.02 0.70 16 32 H 0.08 0.39 8.14 -2.38 -0.02 0.38 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 38 H 0.28 14.83 8.32 -92.71 -0.77 14.06 16 Total: -1.00 -73.41 342.32 1.12 -72.29 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.33 Total: 8.94 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 5.93 Total: -21.72 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.31 Total: -87.79 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.65 Total: -27.15 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 12.13 SS G_CDS: -2.21 Total: 9.92 kcal Total: -73.41 1.12 -72.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330387596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.971 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds