Wall clock time and date at job start Tue Mar 31 2020 14:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31596 * 122.23234 * 2 1 4 4 C 1.29949 * 117.13912 * 180.19501 * 3 2 1 5 5 N 1.38892 * 125.36535 * 179.84498 * 4 3 2 6 6 C 1.34775 * 119.99975 * 179.72093 * 5 4 3 7 7 O 1.21287 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47364 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.87039 * 54.29927 * 9 8 6 11 11 C 1.54104 * 109.88136 * 175.30809 * 9 8 6 12 12 C 1.54805 * 104.18715 * 121.60340 * 11 9 8 13 13 C 1.54993 * 102.09764 * 20.87963 * 12 11 9 14 14 O 1.43741 * 110.00290 * 293.21193 * 9 8 6 15 15 S 1.76143 * 109.26916 * 359.57682 * 4 3 2 16 16 C 1.34662 * 122.23119 * 179.73017 * 2 1 3 17 17 S 1.76195 * 125.92918 * 0.05594 * 16 2 1 18 18 C 1.76197 * 100.00036 * 179.97438 * 17 16 2 19 19 H 1.08003 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.38431 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31812 * 119.99859 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46893 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47174 * 119.99431 * 22 20 18 25 25 H 1.48493 * 109.47196 * 239.99879 * 22 20 18 26 26 H 1.09010 * 109.47062 * 270.26998 * 1 2 3 27 27 H 1.08995 * 109.47257 * 30.27101 * 1 2 3 28 28 H 1.09003 * 109.47275 * 150.27077 * 1 2 3 29 29 H 0.97001 * 119.99763 * 359.71089 * 5 4 3 30 30 H 1.08997 * 109.47212 * 59.99471 * 8 6 5 31 31 H 1.09004 * 109.47197 * 300.00179 * 8 6 5 32 32 H 1.09004 * 110.48326 * 240.27942 * 11 9 8 33 33 H 1.09002 * 110.48549 * 2.79321 * 11 9 8 34 34 H 1.09004 * 110.90856 * 139.08289 * 12 11 9 35 35 H 1.09008 * 110.90524 * 262.68042 * 12 11 9 36 36 H 1.09000 * 110.61715 * 81.47543 * 13 12 11 37 37 H 1.08993 * 110.61889 * 204.31920 * 13 12 11 38 38 H 0.96998 * 119.99916 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0039 5 7 4.4044 2.0546 -0.0077 6 6 5.7297 1.8100 -0.0059 7 8 6.1355 0.6670 -0.0006 8 6 6.7076 2.9566 -0.0106 9 6 8.1361 2.4087 -0.0080 10 1 8.2679 1.7140 -0.8376 11 6 9.1427 3.5690 -0.1313 12 6 10.0228 3.4440 1.1361 13 6 9.7969 1.9659 1.5440 14 8 8.4043 1.7407 1.2362 15 16 3.9345 -0.7100 0.0040 16 6 2.2251 -1.1391 0.0054 17 16 1.5696 -2.7746 0.0117 18 6 3.0665 -3.7041 0.0160 19 1 4.0187 -3.1944 0.0140 20 6 3.0221 -5.0877 0.0210 21 7 1.8600 -5.7098 0.0231 22 14 4.6090 -6.0731 0.0249 23 1 5.7681 -5.1448 0.0212 24 1 4.6600 -6.9245 1.2406 25 1 4.6604 -6.9334 -1.1844 26 1 -0.3634 0.0048 1.0277 27 1 -0.3633 0.8875 -0.5180 28 1 -0.3634 -0.8924 -0.5096 29 1 4.0799 2.9687 -0.0117 30 1 6.5519 3.5705 0.8765 31 1 6.5529 3.5625 -0.9034 32 1 9.7491 3.4542 -1.0298 33 1 8.6216 4.5263 -0.1435 34 1 11.0714 3.6268 0.9011 35 1 9.6773 4.1204 1.9179 36 1 10.4320 1.3039 0.9553 37 1 9.9842 1.8286 2.6089 38 1 1.8288 -6.6792 0.0270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330390855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:00 Heat of formation + Delta-G solvation = -50.580542 kcal Electronic energy + Delta-G solvation = -22640.523517 eV Core-core repulsion = 19121.600521 eV Total energy + Delta-G solvation = -3518.922997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37524 -39.23680 -38.36498 -34.64297 -32.77577 -32.72477 -31.94579 -30.38682 -27.27987 -26.88203 -25.71684 -23.67347 -22.37392 -21.33345 -20.85105 -19.61475 -18.09569 -17.56509 -16.94018 -16.28344 -16.17874 -15.92425 -15.55654 -15.06107 -15.01639 -14.38863 -13.93497 -13.90500 -13.80530 -13.14631 -12.84746 -12.62456 -12.56508 -12.01299 -11.93349 -11.86233 -11.58785 -11.38245 -11.32313 -11.24252 -11.05335 -11.01322 -10.69701 -10.50217 -10.20112 -9.84348 -9.75558 -9.48586 -9.00725 -8.68811 -8.59271 -7.73425 -6.55739 -6.44590 -4.22951 1.46688 1.95945 2.57187 2.61294 2.95072 3.11895 3.13301 3.21936 3.41918 3.61414 3.69542 4.02484 4.19186 4.36535 4.58645 4.66019 4.73311 4.86830 4.94016 5.06549 5.08854 5.18716 5.27538 5.34155 5.36854 5.47076 5.56871 5.69841 5.79796 6.02389 6.20835 6.27063 6.50676 6.55633 6.74438 7.03407 7.26234 7.38289 8.09403 8.09689 8.57916 8.93262 10.50202 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.003639 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.955256 B = 7693.630493 C = 9693.392651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.479 5.479 4 C 0.190 3.810 5 N -0.619 5.619 6 C 0.504 3.496 7 O -0.491 6.491 8 C -0.131 4.131 9 C 0.091 3.909 10 H 0.079 0.921 11 C -0.153 4.153 12 C -0.156 4.156 13 C 0.043 3.957 14 O -0.357 6.357 15 S 0.202 5.798 16 C -0.253 4.253 17 S 0.144 5.856 18 C -0.554 4.554 19 H 0.089 0.911 20 C 0.081 3.919 21 N -0.864 5.864 22 Si 0.923 3.077 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.413 0.587 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 18.966 -0.157 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.200 5.200 4 C -0.181 4.181 5 N -0.269 5.269 6 C 0.289 3.711 7 O -0.364 6.364 8 C -0.171 4.171 9 C 0.032 3.968 10 H 0.097 0.903 11 C -0.190 4.190 12 C -0.193 4.193 13 C -0.034 4.034 14 O -0.276 6.276 15 S 0.446 5.554 16 C -0.490 4.490 17 S 0.394 5.606 18 C -0.703 4.703 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.748 3.252 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.454 17.212 -0.023 20.675 hybrid contribution 1.268 0.581 -0.099 1.398 sum 12.723 17.793 -0.122 21.874 Atomic orbital electron populations 1.20110 0.88129 1.02055 1.01742 1.19027 0.96659 0.84639 1.11980 1.65827 1.02861 1.32370 1.18969 1.23819 0.89874 0.93070 1.11290 1.42474 1.04543 1.07914 1.71986 1.20788 0.81713 0.91701 0.76895 1.90736 1.76779 1.22419 1.46460 1.21851 0.93147 0.96647 1.05447 1.22477 0.92228 0.93138 0.88960 0.90271 1.23029 0.97733 0.99257 0.99021 1.23140 1.00512 0.97923 0.97764 1.23556 0.83801 0.94540 1.01473 1.89052 1.25537 1.74319 1.38659 1.85909 1.01561 0.95448 1.72445 1.28766 1.01430 1.06663 1.12121 1.83046 1.11094 0.84508 1.81914 1.23305 0.93611 0.94023 1.59348 0.89283 1.25022 0.98231 0.96675 0.92987 1.70026 1.24340 1.10183 1.45192 0.85998 0.81452 0.79457 0.78282 1.18752 1.20010 1.20039 0.91925 0.91991 0.91069 0.75011 0.87646 0.87172 0.90285 0.90142 0.90263 0.90480 0.92148 0.89004 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.00 0.36 -0.73 16 2 C 0.02 0.42 6.73 -83.96 -0.57 -0.15 16 3 N -0.48 -9.84 10.55 -9.78 -0.10 -9.94 16 4 C 0.19 3.76 8.40 -87.19 -0.73 3.03 16 5 N -0.62 -9.14 5.40 -11.78 -0.06 -9.21 16 6 C 0.50 7.29 7.69 -10.99 -0.08 7.20 16 7 O -0.49 -9.37 13.02 -6.17 -0.08 -9.45 16 8 C -0.13 -1.17 5.20 -27.89 -0.14 -1.31 16 9 C 0.09 0.91 2.92 -26.16 -0.08 0.83 16 10 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 11 C -0.15 -0.98 6.64 -25.20 -0.17 -1.15 16 12 C -0.16 -1.00 7.15 -24.73 -0.18 -1.17 16 13 C 0.04 0.39 7.72 38.21 0.29 0.68 16 14 O -0.36 -4.66 10.57 -46.95 -0.50 -5.16 16 15 S 0.20 4.63 18.35 -107.50 -1.97 2.65 16 16 C -0.25 -6.01 6.67 29.47 0.20 -5.81 16 17 S 0.14 3.71 20.74 -107.50 -2.23 1.48 16 18 C -0.55 -15.46 9.26 30.80 0.29 -15.17 16 19 H 0.09 2.49 5.97 -52.48 -0.31 2.17 16 20 C 0.08 2.22 5.49 -17.49 -0.10 2.13 16 21 N -0.86 -24.23 13.22 55.47 0.73 -23.49 16 22 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.28 7.37 -51.93 -0.38 0.89 16 29 H 0.41 4.49 8.82 -40.82 -0.36 4.13 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.38 7.70 -51.93 -0.40 -0.02 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.28 7.15 8.32 -40.82 -0.34 6.81 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -34.14 346.03 -9.73 -43.87 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.81 Total: -0.48 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.91 Total: -11.62 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.57 Total: -42.64 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.58 Total: -14.60 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 8.34 SS G_CDS: -4.20 Total: 4.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.14 -9.73 -43.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.706 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds