Wall clock time and date at job start Tue Mar 31 2020 14:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31596 * 122.23234 * 2 1 4 4 C 1.29949 * 117.13912 * 180.19501 * 3 2 1 5 5 N 1.38892 * 125.36535 * 179.84498 * 4 3 2 6 6 C 1.34775 * 119.99975 * 179.72093 * 5 4 3 7 7 O 1.21287 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47364 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.87039 * 54.29927 * 9 8 6 11 11 C 1.54104 * 109.88136 * 175.30809 * 9 8 6 12 12 C 1.54805 * 104.18715 * 121.60340 * 11 9 8 13 13 C 1.54993 * 102.09764 * 20.87963 * 12 11 9 14 14 O 1.43741 * 110.00290 * 293.21193 * 9 8 6 15 15 S 1.76143 * 109.26916 * 359.57682 * 4 3 2 16 16 C 1.34662 * 122.23119 * 179.73017 * 2 1 3 17 17 S 1.76195 * 125.92918 * 0.05594 * 16 2 1 18 18 C 1.76197 * 100.00036 * 179.97438 * 17 16 2 19 19 H 1.08003 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.38431 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31812 * 119.99859 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46893 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47174 * 119.99431 * 22 20 18 25 25 H 1.48493 * 109.47196 * 239.99879 * 22 20 18 26 26 H 1.09010 * 109.47062 * 270.26998 * 1 2 3 27 27 H 1.08995 * 109.47257 * 30.27101 * 1 2 3 28 28 H 1.09003 * 109.47275 * 150.27077 * 1 2 3 29 29 H 0.97001 * 119.99763 * 359.71089 * 5 4 3 30 30 H 1.08997 * 109.47212 * 59.99471 * 8 6 5 31 31 H 1.09004 * 109.47197 * 300.00179 * 8 6 5 32 32 H 1.09004 * 110.48326 * 240.27942 * 11 9 8 33 33 H 1.09002 * 110.48549 * 2.79321 * 11 9 8 34 34 H 1.09004 * 110.90856 * 139.08289 * 12 11 9 35 35 H 1.09008 * 110.90524 * 262.68042 * 12 11 9 36 36 H 1.09000 * 110.61715 * 81.47543 * 13 12 11 37 37 H 1.08993 * 110.61889 * 204.31920 * 13 12 11 38 38 H 0.96998 * 119.99916 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0039 5 7 4.4044 2.0546 -0.0077 6 6 5.7297 1.8100 -0.0059 7 8 6.1355 0.6670 -0.0006 8 6 6.7076 2.9566 -0.0106 9 6 8.1361 2.4087 -0.0080 10 1 8.2679 1.7140 -0.8376 11 6 9.1427 3.5690 -0.1313 12 6 10.0228 3.4440 1.1361 13 6 9.7969 1.9659 1.5440 14 8 8.4043 1.7407 1.2362 15 16 3.9345 -0.7100 0.0040 16 6 2.2251 -1.1391 0.0054 17 16 1.5696 -2.7746 0.0117 18 6 3.0665 -3.7041 0.0160 19 1 4.0187 -3.1944 0.0140 20 6 3.0221 -5.0877 0.0210 21 7 1.8600 -5.7098 0.0231 22 14 4.6090 -6.0731 0.0249 23 1 5.7681 -5.1448 0.0212 24 1 4.6600 -6.9245 1.2406 25 1 4.6604 -6.9334 -1.1844 26 1 -0.3634 0.0048 1.0277 27 1 -0.3633 0.8875 -0.5180 28 1 -0.3634 -0.8924 -0.5096 29 1 4.0799 2.9687 -0.0117 30 1 6.5519 3.5705 0.8765 31 1 6.5529 3.5625 -0.9034 32 1 9.7491 3.4542 -1.0298 33 1 8.6216 4.5263 -0.1435 34 1 11.0714 3.6268 0.9011 35 1 9.6773 4.1204 1.9179 36 1 10.4320 1.3039 0.9553 37 1 9.9842 1.8286 2.6089 38 1 1.8288 -6.6792 0.0270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330390855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:00 Heat of formation + Delta-G solvation = -73.676558 kcal Electronic energy + Delta-G solvation = -22641.525036 eV Core-core repulsion = 19121.600521 eV Total energy + Delta-G solvation = -3519.924515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53569 -40.37435 -39.77671 -36.07187 -34.82169 -33.53189 -32.68192 -31.84187 -28.80445 -27.94731 -27.69152 -24.99157 -23.20377 -22.41308 -21.84576 -21.14342 -19.80688 -19.12224 -18.16752 -17.47322 -17.29962 -17.08204 -16.97673 -16.60327 -16.18660 -15.91549 -15.37471 -15.11261 -14.91127 -14.45824 -14.39356 -13.62602 -13.51604 -13.41648 -13.28341 -13.09495 -13.05609 -12.90172 -12.55543 -12.42569 -12.14642 -12.09969 -12.04243 -11.98958 -11.54051 -11.33932 -11.24094 -10.76621 -10.63848 -10.46395 -10.45357 -9.51516 -8.58447 -8.35919 -6.30226 -0.20553 0.24436 0.85010 1.26183 1.27360 1.32815 1.40122 1.53746 1.71480 2.04834 2.14016 2.80402 2.94769 3.09265 3.49684 3.62160 3.79339 3.87653 4.04200 4.14030 4.29028 4.44220 4.48058 4.59770 4.70889 4.74799 4.84749 4.85140 4.95375 4.97984 5.00069 5.09423 5.14799 5.26313 5.29455 5.49159 5.99199 6.02115 6.07240 6.84320 6.86662 6.92981 8.49753 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.003639 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.955256 B = 7693.630493 C = 9693.392651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.485 5.485 4 C 0.230 3.770 5 N -0.606 5.606 6 C 0.500 3.500 7 O -0.536 6.536 8 C -0.118 4.118 9 C 0.079 3.921 10 H 0.054 0.946 11 C -0.143 4.143 12 C -0.147 4.147 13 C 0.031 3.969 14 O -0.399 6.399 15 S 0.150 5.850 16 C -0.284 4.284 17 S 0.097 5.903 18 C -0.575 4.575 19 H 0.078 0.922 20 C 0.036 3.964 21 N -0.896 5.896 22 Si 0.985 3.015 23 H -0.272 1.272 24 H -0.262 1.262 25 H -0.261 1.261 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.437 0.563 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 22.618 -0.337 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.207 5.207 4 C -0.143 4.143 5 N -0.259 5.259 6 C 0.288 3.712 7 O -0.412 6.412 8 C -0.157 4.157 9 C 0.020 3.980 10 H 0.072 0.928 11 C -0.180 4.180 12 C -0.185 4.185 13 C -0.046 4.046 14 O -0.319 6.319 15 S 0.395 5.605 16 C -0.519 4.519 17 S 0.344 5.656 18 C -0.723 4.723 19 H 0.096 0.904 20 C -0.172 4.172 21 N -0.530 5.530 22 Si 0.806 3.194 23 H -0.196 1.196 24 H -0.187 1.187 25 H -0.186 1.186 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.279 0.721 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.796 20.942 -0.206 24.543 hybrid contribution 0.972 -0.223 -0.033 0.997 sum 13.768 20.718 -0.239 24.877 Atomic orbital electron populations 1.20242 0.85640 1.03152 1.03072 1.19723 0.98434 0.84197 1.07990 1.66053 1.02648 1.31231 1.20756 1.24201 0.90263 0.93148 1.06665 1.42718 1.04114 1.07782 1.71260 1.22089 0.81784 0.92687 0.74621 1.90739 1.77280 1.25039 1.48095 1.22051 0.90246 0.94539 1.08859 1.22657 0.93990 0.94043 0.87267 0.92792 1.23012 0.96930 0.98703 0.99351 1.23124 1.01723 0.95654 0.97973 1.23755 0.82309 0.96767 1.01726 1.89010 1.27529 1.75500 1.39883 1.86158 1.02310 0.98597 1.73472 1.28573 1.01668 1.06004 1.15701 1.82821 1.11182 0.86290 1.85287 1.23469 0.93846 0.94874 1.60145 0.90385 1.25870 1.01378 0.97390 0.92526 1.70097 1.26016 1.10690 1.46227 0.85096 0.77142 0.77956 0.79166 1.19613 1.18682 1.18588 0.90368 0.89388 0.91394 0.72135 0.84824 0.82612 0.89279 0.87365 0.88480 0.89630 0.92622 0.88764 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.23 0.71 -1.42 16 2 C 0.04 1.61 6.73 41.77 0.28 1.89 16 3 N -0.48 -19.04 10.55 -184.87 -1.95 -20.99 16 4 C 0.23 8.79 8.40 179.15 1.50 10.29 16 5 N -0.61 -16.21 5.40 -309.57 -1.67 -17.88 16 6 C 0.50 13.43 7.69 87.66 0.67 14.11 16 7 O -0.54 -20.49 13.02 8.15 0.11 -20.39 16 8 C -0.12 -1.64 5.20 29.85 0.16 -1.49 16 9 C 0.08 1.42 2.92 30.97 0.09 1.51 16 10 H 0.05 1.21 7.94 -2.39 -0.02 1.19 16 11 C -0.14 -1.29 6.64 31.58 0.21 -1.08 16 12 C -0.15 -1.43 7.15 31.89 0.23 -1.20 16 13 C 0.03 0.53 7.72 72.66 0.56 1.09 16 14 O -0.40 -10.18 10.57 -137.78 -1.46 -11.64 16 15 S 0.15 7.03 18.35 -56.49 -1.04 6.00 16 16 C -0.28 -13.84 6.67 67.00 0.45 -13.39 16 17 S 0.10 5.22 20.74 -56.49 -1.17 4.05 16 18 C -0.57 -33.60 9.26 67.87 0.63 -32.97 16 19 H 0.08 4.60 5.97 -2.91 -0.02 4.59 16 20 C 0.04 2.00 5.49 84.74 0.47 2.46 16 21 N -0.90 -51.78 13.22 21.59 0.29 -51.50 16 22 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.42 7.37 -2.39 -0.02 2.40 16 29 H 0.44 7.63 8.82 -92.71 -0.82 6.81 16 30 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.16 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.11 0.41 7.70 -2.39 -0.02 0.39 16 34 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.28 14.94 8.32 -92.71 -0.77 14.17 16 Total: -1.00 -79.13 346.03 1.38 -77.76 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.28 Total: 8.21 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 5.96 Total: -20.20 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.34 Total: -90.37 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.35 Total: -32.03 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 12.26 SS G_CDS: -2.21 Total: 10.05 kcal Total: -79.13 1.38 -77.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.079 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds