Wall clock time and date at job start Tue Mar 31 2020 14:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36582 * 179.97438 * 4 3 2 6 6 C 1.34781 * 120.00243 * 180.02562 * 5 4 3 7 7 O 1.21292 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47155 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.32925 * 307.25340 * 9 8 6 11 11 C 1.54471 * 110.37235 * 184.99843 * 9 8 6 12 12 C 1.54505 * 104.06591 * 217.19016 * 11 9 8 13 13 C 1.54485 * 104.06107 * 0.02562 * 12 11 9 14 14 O 1.44423 * 104.80024 * 23.97596 * 13 12 11 15 15 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 16 16 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 17 17 S 1.76194 * 125.92795 * 359.75209 * 16 2 1 18 18 C 1.76201 * 100.00196 * 180.02562 * 17 16 2 19 19 H 1.08002 * 119.99321 * 0.02562 * 18 17 16 20 20 C 1.38426 * 120.00311 * 179.97438 * 18 17 16 21 21 N 1.31813 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47369 * 120.00367 * 22 20 18 25 25 H 1.48505 * 109.47444 * 240.00060 * 22 20 18 26 26 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 27 27 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 28 28 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 29 29 H 0.96999 * 120.00012 * 0.02562 * 5 4 3 30 30 H 1.08996 * 109.47326 * 300.00330 * 8 6 5 31 31 H 1.08999 * 109.46845 * 60.00161 * 8 6 5 32 32 H 1.09001 * 110.51534 * 335.84142 * 11 9 8 33 33 H 1.09008 * 110.50814 * 98.41267 * 11 9 8 34 34 H 1.09003 * 110.51183 * 118.64605 * 12 11 9 35 35 H 1.08998 * 110.51178 * 241.35968 * 12 11 9 36 36 H 1.08996 * 110.37326 * 142.80895 * 13 12 11 37 37 H 1.09002 * 110.36776 * 265.03637 * 13 12 11 38 38 H 0.96997 * 120.00114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0069 6 6 5.7297 1.8102 -0.0132 7 8 6.1354 0.6672 -0.0181 8 6 6.7074 2.9569 -0.0153 9 6 8.1360 2.4089 -0.0220 10 1 8.2713 1.6944 0.7898 11 6 9.1552 3.5631 0.1018 12 6 10.3241 3.1315 -0.8117 13 6 9.8726 1.7678 -1.3800 14 8 8.4311 1.7913 -1.2940 15 16 3.9345 -0.7098 -0.0121 16 6 2.2251 -1.1390 -0.0057 17 16 1.5697 -2.7745 -0.0077 18 6 3.0665 -3.7041 -0.0149 19 1 4.0187 -3.1943 -0.0162 20 6 3.0221 -5.0876 -0.0177 21 7 1.8601 -5.7098 -0.0154 22 14 4.6090 -6.0730 -0.0260 23 1 5.7681 -5.1447 -0.0279 24 1 4.6651 -6.9315 1.1844 25 1 4.6556 -6.9262 -1.2406 26 1 -0.3634 -0.0051 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3634 -0.8874 -0.5182 29 1 4.0798 2.9688 -0.0033 30 1 6.5483 3.5684 -0.9034 31 1 6.5561 3.5650 0.8765 32 1 8.7191 4.4974 -0.2516 33 1 9.4919 3.6661 1.1335 34 1 10.4659 3.8524 -1.6169 35 1 11.2405 3.0196 -0.2322 36 1 10.1892 1.6656 -2.4179 37 1 10.2770 0.9535 -0.7787 38 1 1.8290 -6.6792 -0.0170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330390856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:03 Heat of formation + Delta-G solvation = -50.962580 kcal Electronic energy + Delta-G solvation = -22619.847519 eV Core-core repulsion = 19100.907956 eV Total energy + Delta-G solvation = -3518.939563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36251 -39.23138 -38.37850 -34.66060 -32.78219 -32.68514 -31.98644 -30.39311 -27.28713 -26.89408 -25.72447 -23.73810 -22.29538 -21.30253 -20.87693 -19.60795 -18.08807 -17.58004 -16.95470 -16.34734 -16.07454 -15.94241 -15.55879 -15.08108 -15.06631 -14.46713 -13.99082 -13.95673 -13.75425 -13.15273 -12.70493 -12.60278 -12.56206 -12.05386 -11.95022 -11.86555 -11.58678 -11.42068 -11.33081 -11.24860 -11.03284 -10.95159 -10.71487 -10.51424 -10.20833 -9.91224 -9.77933 -9.49428 -9.01632 -8.69726 -8.60125 -7.74352 -6.56382 -6.45394 -4.23668 1.45523 1.94936 2.55053 2.60376 2.93266 3.11279 3.12575 3.21299 3.41085 3.62404 3.69158 4.01774 4.23351 4.35939 4.60604 4.65025 4.76256 4.86189 4.92588 5.08145 5.09159 5.17816 5.25988 5.33070 5.40756 5.48991 5.57402 5.69939 5.77518 6.01902 6.19884 6.26511 6.50011 6.54667 6.66303 7.02397 7.24682 7.37563 8.07179 8.08953 8.57058 8.92577 10.49555 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.003658 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.740196 B = 7653.486994 C = 9715.407632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.478 5.478 4 C 0.190 3.810 5 N -0.619 5.619 6 C 0.504 3.496 7 O -0.493 6.493 8 C -0.126 4.126 9 C 0.088 3.912 10 H 0.081 0.919 11 C -0.151 4.151 12 C -0.155 4.155 13 C 0.043 3.957 14 O -0.358 6.358 15 S 0.202 5.798 16 C -0.253 4.253 17 S 0.145 5.855 18 C -0.554 4.554 19 H 0.089 0.911 20 C 0.081 3.919 21 N -0.864 5.864 22 Si 0.923 3.077 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.413 0.587 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 18.533 0.466 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.200 5.200 4 C -0.181 4.181 5 N -0.268 5.268 6 C 0.289 3.711 7 O -0.366 6.366 8 C -0.166 4.166 9 C 0.030 3.970 10 H 0.099 0.901 11 C -0.189 4.189 12 C -0.193 4.193 13 C -0.034 4.034 14 O -0.276 6.276 15 S 0.446 5.554 16 C -0.490 4.490 17 S 0.395 5.605 18 C -0.703 4.703 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.748 3.252 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.444 16.822 0.299 20.348 hybrid contribution 1.291 0.524 0.126 1.399 sum 12.735 17.346 0.425 21.523 Atomic orbital electron populations 1.20112 0.88118 1.02071 1.01746 1.19027 0.96665 0.84631 1.11983 1.65825 1.02857 1.32369 1.18916 1.23811 0.89878 0.93050 1.11358 1.42458 1.04520 1.07946 1.71915 1.20784 0.81753 0.91669 0.76871 1.90734 1.76816 1.22443 1.46608 1.21698 0.92641 0.96662 1.05647 1.22733 0.92297 0.93546 0.88418 0.90117 1.23007 0.95940 0.99144 1.00839 1.22940 0.98660 0.98057 0.99638 1.23391 0.81880 0.96239 1.01907 1.89261 1.20685 1.81591 1.36109 1.85900 1.01595 0.95450 1.72463 1.28763 1.01410 1.06673 1.12105 1.83051 1.11089 0.84497 1.81869 1.23304 0.93608 0.94025 1.59363 0.89287 1.25020 0.98234 0.96674 0.92984 1.70025 1.24343 1.10190 1.45167 0.85997 0.81438 0.79454 0.78289 1.18766 1.20034 1.20007 0.91919 0.91976 0.91069 0.74968 0.87451 0.87001 0.90388 0.90227 0.90677 0.90553 0.89143 0.92156 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.02 36.00 0.36 -0.73 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.15 16 3 N -0.48 -9.79 10.55 -9.78 -0.10 -9.89 16 4 C 0.19 3.74 8.40 -87.20 -0.73 3.00 16 5 N -0.62 -9.07 5.40 -11.78 -0.06 -9.13 16 6 C 0.50 7.23 7.72 -10.99 -0.08 7.14 16 7 O -0.49 -9.32 13.13 -1.05 -0.01 -9.33 16 8 C -0.13 -1.12 5.33 -27.88 -0.15 -1.27 16 9 C 0.09 0.89 2.74 -25.96 -0.07 0.82 16 10 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 11 C -0.15 -1.00 6.63 -25.17 -0.17 -1.17 16 12 C -0.16 -1.03 7.09 -25.16 -0.18 -1.21 16 13 C 0.04 0.40 7.63 37.94 0.29 0.69 16 14 O -0.36 -4.66 10.92 -41.83 -0.46 -5.12 16 15 S 0.20 4.60 18.35 -107.50 -1.97 2.62 16 16 C -0.25 -5.98 6.67 29.46 0.20 -5.79 16 17 S 0.14 3.72 20.74 -107.50 -2.23 1.49 16 18 C -0.55 -15.42 9.26 30.80 0.29 -15.13 16 19 H 0.09 2.48 5.97 -52.49 -0.31 2.16 16 20 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 21 N -0.86 -24.17 13.22 55.47 0.73 -23.44 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.27 7.38 -51.93 -0.38 0.89 16 29 H 0.41 4.44 8.82 -40.82 -0.36 4.08 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 33 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.28 7.14 8.32 -40.82 -0.34 6.80 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -33.97 346.44 -9.64 -43.61 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.82 Total: -0.42 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.91 Total: -11.67 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.57 Total: -42.46 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.47 Total: -14.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 8.31 SS G_CDS: -4.20 Total: 4.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.97 -9.64 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.356 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds