Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22687 * 2 1 4 4 C 1.29944 * 117.13589 * 180.26826 * 3 2 1 5 5 N 1.38890 * 125.36582 * 179.97438 * 4 3 2 6 6 C 1.34781 * 120.00243 * 180.02562 * 5 4 3 7 7 O 1.21292 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47155 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.32925 * 307.25340 * 9 8 6 11 11 C 1.54471 * 110.37235 * 184.99843 * 9 8 6 12 12 C 1.54505 * 104.06591 * 217.19016 * 11 9 8 13 13 C 1.54485 * 104.06107 * 0.02562 * 12 11 9 14 14 O 1.44423 * 104.80024 * 23.97596 * 13 12 11 15 15 S 1.76144 * 109.27225 * 0.02562 * 4 3 2 16 16 C 1.34655 * 122.23269 * 180.28575 * 2 1 3 17 17 S 1.76194 * 125.92795 * 359.75209 * 16 2 1 18 18 C 1.76201 * 100.00196 * 180.02562 * 17 16 2 19 19 H 1.08002 * 119.99321 * 0.02562 * 18 17 16 20 20 C 1.38426 * 120.00311 * 179.97438 * 18 17 16 21 21 N 1.31813 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47369 * 120.00367 * 22 20 18 25 25 H 1.48505 * 109.47444 * 240.00060 * 22 20 18 26 26 H 1.09004 * 109.47227 * 269.71307 * 1 2 3 27 27 H 1.09000 * 109.47499 * 29.71410 * 1 2 3 28 28 H 1.09000 * 109.47554 * 149.71715 * 1 2 3 29 29 H 0.96999 * 120.00012 * 0.02562 * 5 4 3 30 30 H 1.08996 * 109.47326 * 300.00330 * 8 6 5 31 31 H 1.08999 * 109.46845 * 60.00161 * 8 6 5 32 32 H 1.09001 * 110.51534 * 335.84142 * 11 9 8 33 33 H 1.09008 * 110.50814 * 98.41267 * 11 9 8 34 34 H 1.09003 * 110.51183 * 118.64605 * 12 11 9 35 35 H 1.08998 * 110.51178 * 241.35968 * 12 11 9 36 36 H 1.08996 * 110.37326 * 142.80895 * 13 12 11 37 37 H 1.09002 * 110.36776 * 265.03637 * 13 12 11 38 38 H 0.96997 * 120.00114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0054 5 7 4.4042 2.0547 -0.0069 6 6 5.7297 1.8102 -0.0132 7 8 6.1354 0.6672 -0.0181 8 6 6.7074 2.9569 -0.0153 9 6 8.1360 2.4089 -0.0220 10 1 8.2713 1.6944 0.7898 11 6 9.1552 3.5631 0.1018 12 6 10.3241 3.1315 -0.8117 13 6 9.8726 1.7678 -1.3800 14 8 8.4311 1.7913 -1.2940 15 16 3.9345 -0.7098 -0.0121 16 6 2.2251 -1.1390 -0.0057 17 16 1.5697 -2.7745 -0.0077 18 6 3.0665 -3.7041 -0.0149 19 1 4.0187 -3.1943 -0.0162 20 6 3.0221 -5.0876 -0.0177 21 7 1.8601 -5.7098 -0.0154 22 14 4.6090 -6.0730 -0.0260 23 1 5.7681 -5.1447 -0.0279 24 1 4.6651 -6.9315 1.1844 25 1 4.6556 -6.9262 -1.2406 26 1 -0.3634 -0.0051 1.0277 27 1 -0.3634 0.8925 -0.5094 28 1 -0.3634 -0.8874 -0.5182 29 1 4.0798 2.9688 -0.0033 30 1 6.5483 3.5684 -0.9034 31 1 6.5561 3.5650 0.8765 32 1 8.7191 4.4974 -0.2516 33 1 9.4919 3.6661 1.1335 34 1 10.4659 3.8524 -1.6169 35 1 11.2405 3.0196 -0.2322 36 1 10.1892 1.6656 -2.4179 37 1 10.2770 0.9535 -0.7787 38 1 1.8290 -6.6792 -0.0170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330390856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = -74.130992 kcal Electronic energy + Delta-G solvation = -22620.852176 eV Core-core repulsion = 19100.907956 eV Total energy + Delta-G solvation = -3519.944221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53295 -40.36430 -39.78137 -36.08202 -34.82247 -33.50411 -32.71784 -31.85075 -28.80601 -27.96012 -27.69490 -25.04117 -23.20952 -22.36295 -21.84265 -21.14272 -19.79732 -19.12937 -18.16053 -17.47078 -17.38330 -17.08280 -16.86969 -16.60285 -16.24065 -15.94143 -15.40512 -15.18147 -14.92496 -14.50601 -14.39249 -13.64014 -13.41764 -13.33802 -13.28308 -13.10024 -13.06397 -12.90228 -12.61319 -12.41488 -12.15017 -12.10516 -12.06736 -12.04290 -11.45871 -11.34111 -11.26060 -10.77227 -10.71750 -10.46748 -10.45630 -9.51700 -8.58479 -8.36133 -6.30339 -0.20903 0.24133 0.84668 1.26079 1.26533 1.32424 1.40077 1.53306 1.70506 2.04525 2.13892 2.80394 2.94951 3.09198 3.49513 3.60218 3.79751 3.88127 4.05996 4.15660 4.26359 4.44089 4.49684 4.58769 4.66338 4.74248 4.84899 4.86154 4.91740 4.97886 4.99646 5.09134 5.15728 5.23669 5.29343 5.48929 5.93761 6.01530 6.03001 6.83476 6.86587 6.92042 8.49713 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.003658 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.740196 B = 7653.486994 C = 9715.407632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.484 5.484 4 C 0.230 3.770 5 N -0.605 5.605 6 C 0.500 3.500 7 O -0.538 6.538 8 C -0.114 4.114 9 C 0.076 3.924 10 H 0.057 0.943 11 C -0.141 4.141 12 C -0.149 4.149 13 C 0.031 3.969 14 O -0.398 6.398 15 S 0.150 5.850 16 C -0.284 4.284 17 S 0.097 5.903 18 C -0.575 4.575 19 H 0.078 0.922 20 C 0.036 3.964 21 N -0.896 5.896 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.261 1.261 25 H -0.262 1.262 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.437 0.563 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 22.126 0.746 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.206 5.206 4 C -0.143 4.143 5 N -0.258 5.258 6 C 0.289 3.711 7 O -0.413 6.413 8 C -0.153 4.153 9 C 0.018 3.982 10 H 0.075 0.925 11 C -0.179 4.179 12 C -0.187 4.187 13 C -0.045 4.045 14 O -0.318 6.318 15 S 0.395 5.605 16 C -0.519 4.519 17 S 0.344 5.656 18 C -0.723 4.723 19 H 0.096 0.904 20 C -0.172 4.172 21 N -0.530 5.530 22 Si 0.806 3.194 23 H -0.196 1.196 24 H -0.186 1.186 25 H -0.187 1.187 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.279 0.721 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.812 20.491 0.582 24.174 hybrid contribution 0.983 -0.260 0.031 1.017 sum 13.795 20.231 0.613 24.495 Atomic orbital electron populations 1.20244 0.85644 1.03123 1.03109 1.19720 0.98434 0.84195 1.07995 1.66052 1.02653 1.31230 1.20714 1.24193 0.90265 0.93136 1.06712 1.42697 1.04093 1.07814 1.71202 1.22068 0.81820 0.92640 0.74604 1.90737 1.77310 1.25040 1.48220 1.21900 0.89752 0.94558 1.09047 1.22920 0.94043 0.94436 0.86776 0.92465 1.22993 0.94633 0.98297 1.01929 1.22935 0.99274 0.96332 1.00135 1.23569 0.80630 0.97932 1.02385 1.89218 1.22625 1.82413 1.37497 1.86145 1.02317 0.98573 1.73474 1.28570 1.01665 1.06004 1.15685 1.82830 1.11190 0.86290 1.85261 1.23469 0.93844 0.94870 1.60146 0.90367 1.25868 1.01379 0.97393 0.92524 1.70096 1.26025 1.10690 1.46222 0.85095 0.77145 0.77956 0.79156 1.19584 1.18593 1.18710 0.90264 0.89440 0.91441 0.72093 0.84714 0.82397 0.88153 0.88577 0.89495 0.89200 0.88739 0.93090 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.23 0.71 -1.42 16 2 C 0.04 1.61 6.73 41.77 0.28 1.89 16 3 N -0.48 -18.94 10.55 -184.87 -1.95 -20.89 16 4 C 0.23 8.73 8.40 179.15 1.50 10.23 16 5 N -0.61 -16.05 5.40 -309.57 -1.67 -17.72 16 6 C 0.50 13.30 7.72 87.65 0.68 13.97 16 7 O -0.54 -20.32 13.13 3.24 0.04 -20.28 16 8 C -0.11 -1.57 5.33 29.85 0.16 -1.41 16 9 C 0.08 1.37 2.74 31.10 0.09 1.45 16 10 H 0.06 1.26 7.91 -2.39 -0.02 1.24 16 11 C -0.14 -1.32 6.63 31.61 0.21 -1.11 16 12 C -0.15 -1.57 7.09 31.61 0.22 -1.35 16 13 C 0.03 0.56 7.63 72.49 0.55 1.12 16 14 O -0.40 -10.07 10.92 -142.67 -1.56 -11.62 16 15 S 0.15 7.01 18.35 -56.49 -1.04 5.97 16 16 C -0.28 -13.78 6.67 67.00 0.45 -13.33 16 17 S 0.10 5.21 20.74 -56.49 -1.17 4.04 16 18 C -0.57 -33.49 9.26 67.86 0.63 -32.86 16 19 H 0.08 4.60 5.97 -2.91 -0.02 4.58 16 20 C 0.04 1.99 5.49 84.74 0.46 2.46 16 21 N -0.90 -51.68 13.22 21.59 0.29 -51.40 16 22 Si 0.99 44.40 29.55 68.60 2.03 46.43 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 29 H 0.44 7.54 8.82 -92.71 -0.82 6.72 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.28 14.91 8.32 -92.71 -0.77 14.14 16 Total: -1.00 -78.56 346.44 1.20 -77.36 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.28 Total: 8.47 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.95 Total: -20.36 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.34 Total: -90.01 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.52 Total: -31.90 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 12.22 SS G_CDS: -2.21 Total: 10.01 kcal Total: -78.56 1.20 -77.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.233 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds