Wall clock time and date at job start Tue Mar 31 2020 15:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48496 * 109.46908 * 239.99421 * 3 2 1 5 5 H 1.48495 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47166 * 120.00037 * 3 2 1 7 7 C 1.38812 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00386 * 164.09188 * 7 2 1 9 9 N 1.36942 * 119.99749 * 344.08304 * 7 2 1 10 10 C 1.46916 * 120.63349 * 328.83558 * 9 7 2 11 11 C 1.53189 * 108.89385 * 233.51204 * 10 9 7 12 12 C 1.53076 * 109.29981 * 305.57940 * 11 10 9 13 13 C 1.52992 * 109.45405 * 181.24333 * 12 11 10 14 14 N 1.46492 * 109.47394 * 64.79032 * 13 12 11 15 15 C 1.30489 * 120.00311 * 114.11459 * 14 13 12 16 16 O 1.35333 * 120.00298 * 185.15749 * 15 14 13 17 17 C 1.46881 * 119.99718 * 5.15409 * 15 14 13 18 18 S 1.75825 * 125.45031 * 272.25127 * 17 15 14 19 19 C 1.70611 * 91.58942 * 179.97438 * 18 17 15 20 20 C 1.33623 * 110.98382 * 0.32247 * 19 18 17 21 21 C 1.36508 * 125.44848 * 92.55800 * 17 15 14 22 22 Cl 1.73595 * 123.37266 * 0.02562 * 21 17 15 23 23 C 1.53039 * 109.65283 * 61.15100 * 12 11 10 24 24 C 1.46924 * 120.62347 * 148.81400 * 9 7 2 25 25 H 0.96996 * 120.00423 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.58900 * 353.37450 * 10 9 7 27 27 H 1.09007 * 109.58691 * 113.65619 * 10 9 7 28 28 H 1.09001 * 109.49673 * 65.39457 * 11 10 9 29 29 H 1.09009 * 109.49581 * 185.48546 * 11 10 9 30 30 H 1.08998 * 109.33188 * 301.13647 * 12 11 10 31 31 H 1.09007 * 109.46711 * 184.78916 * 13 12 11 32 32 H 1.08997 * 109.47330 * 304.78466 * 13 12 11 33 33 H 0.96697 * 114.00325 * 175.03275 * 16 15 14 34 34 H 1.07998 * 124.50923 * 180.09523 * 19 18 17 35 35 H 1.07995 * 122.46290 * 179.76660 * 20 19 18 36 36 H 1.09006 * 109.49502 * 178.75125 * 23 12 11 37 37 H 1.08997 * 109.50041 * 58.65623 * 23 12 11 38 38 H 1.09008 * 109.58323 * 246.20039 * 24 9 7 39 39 H 1.09001 * 109.59441 * 6.48181 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0592 -1.2202 -0.2558 9 7 1.3649 -2.3652 0.3263 10 6 0.2487 -2.3597 1.2815 11 6 0.5366 -3.3806 2.3867 12 6 0.8193 -4.7454 1.7537 13 6 1.0768 -5.7748 2.8558 14 7 -0.1411 -5.9555 3.6495 15 6 -0.7671 -7.1004 3.6326 16 8 -1.9470 -7.2362 4.2814 17 6 -0.1910 -8.2417 2.9095 18 16 -0.4443 -8.6037 1.2077 19 6 0.5455 -9.9898 1.3063 20 6 1.0175 -10.1536 2.5456 21 6 0.6220 -9.1943 3.4526 22 17 1.1069 -9.1986 5.1195 23 6 2.0498 -4.6482 0.8490 24 6 1.7755 -3.6421 -0.2733 25 1 -0.4850 0.8400 -0.0004 26 1 0.1469 -1.3665 1.7190 27 1 -0.6739 -2.6286 0.7670 28 1 1.4065 -3.0605 2.9601 29 1 -0.3275 -3.4553 3.0471 30 1 -0.0427 -5.0544 1.1624 31 1 1.3614 -6.7258 2.4053 32 1 1.8819 -5.4229 3.5007 33 1 -2.3716 -8.0949 4.1499 34 1 0.7591 -10.6493 0.4781 35 1 1.6620 -10.9767 2.8163 36 1 2.2619 -5.6263 0.4171 37 1 2.9066 -4.3151 1.4347 38 1 0.9778 -4.0181 -0.9141 39 1 2.6797 -3.4947 -0.8638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330613855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:57 Heat of formation + Delta-G solvation = 22.754049 kcal Electronic energy + Delta-G solvation = -23358.606455 eV Core-core repulsion = 19840.819779 eV Total energy + Delta-G solvation = -3517.786676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.50852 -37.97219 -37.68828 -36.47104 -35.16157 -32.94502 -30.77002 -29.70340 -29.63335 -26.83786 -25.13650 -24.04185 -22.09338 -21.70760 -20.71411 -19.84064 -19.09237 -18.96208 -16.90171 -16.64820 -16.03367 -15.56473 -14.79055 -14.56012 -14.32172 -13.95466 -13.90865 -13.68652 -13.44625 -13.31916 -13.05104 -12.90299 -12.58817 -12.19633 -11.91243 -11.70884 -11.58159 -11.25737 -11.21345 -10.90339 -10.65009 -10.58072 -10.13831 -10.12054 -9.89345 -9.61838 -9.46622 -9.22214 -9.11649 -8.95400 -8.88646 -8.37907 -6.52504 -5.70331 -3.15662 0.17241 0.68619 1.34582 1.86756 1.91753 2.43177 3.29535 3.43336 3.48903 3.50460 3.95457 4.56522 4.58420 4.70476 5.21123 5.22362 5.32464 5.47764 5.49867 5.51825 5.58158 5.64572 5.74810 5.92870 6.01017 6.20467 6.30617 6.46042 6.61562 6.78950 6.84204 6.95881 7.00701 7.06577 7.08226 7.51683 7.77622 7.87788 8.00426 8.56247 9.31018 9.94019 10.53348 11.37893 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.002974 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.987293 B = 9413.844364 C = 9707.325347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.128 4.128 12 C -0.067 4.067 13 C 0.060 3.940 14 N -0.493 5.493 15 C 0.397 3.603 16 O -0.455 6.455 17 C -0.266 4.266 18 S 0.268 5.732 19 C -0.237 4.237 20 C -0.138 4.138 21 C -0.011 4.011 22 Cl -0.033 7.033 23 C -0.126 4.126 24 C 0.148 3.852 25 H 0.254 0.746 26 H 0.079 0.921 27 H 0.015 0.985 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.404 0.596 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -25.077 5.295 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.167 4.167 12 C -0.086 4.086 13 C -0.069 4.069 14 N -0.222 5.222 15 C 0.165 3.835 16 O -0.249 6.249 17 C -0.389 4.389 18 S 0.534 5.466 19 C -0.374 4.374 20 C -0.169 4.169 21 C -0.054 4.054 22 Cl -0.004 7.004 23 C -0.166 4.166 24 C 0.022 3.978 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.256 0.744 34 H 0.194 0.806 35 H 0.169 0.831 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.158 -22.810 4.809 23.411 hybrid contribution 1.534 -1.299 0.706 2.130 sum -0.623 -24.109 5.515 24.740 Atomic orbital electron populations 1.70023 1.05291 1.25541 1.53637 1.25108 0.95244 0.98386 1.00610 0.86402 0.78940 0.83494 0.78095 1.20929 1.21655 1.21007 1.19104 0.92022 0.84778 1.42589 0.92048 1.44017 1.38247 1.02206 1.46992 1.20719 0.88872 0.97498 0.88124 1.22144 1.00770 0.94508 0.99281 1.21043 0.98212 0.95262 0.94072 1.22416 0.90359 0.98849 0.95308 1.71977 1.11344 1.17966 1.20930 1.20336 0.86838 0.87085 0.89218 1.84806 1.30737 1.40901 1.68458 1.24845 1.10494 1.03163 1.00359 1.83698 1.43059 1.17398 1.02433 1.25206 1.05852 1.04477 1.01912 1.19708 1.04365 1.01120 0.91703 1.20295 1.00299 0.96502 0.88301 1.98399 1.90251 1.98149 1.13651 1.22051 0.97195 0.98772 0.98612 1.20854 0.97489 0.87037 0.92468 0.93641 0.90220 0.96679 0.93049 0.92242 0.92302 0.94199 0.89701 0.74351 0.80585 0.83067 0.93546 0.92230 0.96762 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 11.36 55.49 0.63 -26.32 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 3 Si 0.90 22.21 29.58 -169.99 -5.03 17.18 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.26 -7.22 9.55 -15.06 -0.14 -7.36 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -15.39 2.98 -172.32 -0.51 -15.90 16 10 C 0.17 4.37 5.27 -3.72 -0.02 4.35 16 11 C -0.13 -2.68 5.27 -26.59 -0.14 -2.82 16 12 C -0.07 -1.19 2.35 -90.56 -0.21 -1.41 16 13 C 0.06 0.93 5.62 -4.05 -0.02 0.91 16 14 N -0.49 -7.95 10.06 -59.47 -0.60 -8.55 16 15 C 0.40 5.14 7.61 -14.63 -0.11 5.02 16 16 O -0.45 -5.12 13.63 -17.69 -0.24 -5.36 16 17 C -0.27 -2.76 3.75 -36.71 -0.14 -2.90 16 18 S 0.27 2.26 22.94 -107.50 -2.47 -0.21 16 19 C -0.24 -1.61 10.91 29.12 0.32 -1.29 16 20 C -0.14 -1.06 10.06 -41.35 -0.42 -1.48 16 21 C -0.01 -0.11 6.39 -40.36 -0.26 -0.37 16 22 Cl -0.03 -0.34 28.75 -51.86 -1.49 -1.83 16 23 C -0.13 -2.25 5.36 -26.61 -0.14 -2.40 16 24 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 25 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.08 2.24 6.27 -51.93 -0.33 1.91 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.23 7.72 -51.92 -0.40 0.83 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.56 6.01 -51.93 -0.31 0.25 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.40 2.24 8.81 45.56 0.40 2.64 16 34 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -33.23 350.25 -10.23 -43.45 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.40 Total: -1.26 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.40 Total: -6.48 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.48 Total: -50.77 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.24 Total: -5.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.47 Total: -0.21 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.49 Total: -1.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.23 -10.23 -43.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330613855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.209 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds