Wall clock time and date at job start Tue Mar 31 2020 14:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31589 * 122.23328 * 2 1 4 4 C 1.29947 * 117.14146 * 180.02562 * 3 2 1 5 5 N 1.38888 * 125.36917 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00395 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.52999 * 110.56564 * 302.67861 * 8 6 5 10 10 C 1.54517 * 110.50933 * 180.02562 * 8 6 5 11 11 C 1.54479 * 104.06037 * 241.35273 * 10 8 6 12 12 O 1.44433 * 104.80518 * 336.02227 * 11 10 8 13 13 C 1.44422 * 105.27452 * 40.51075 * 12 11 10 14 14 S 1.76151 * 109.26733 * 0.25737 * 4 3 2 15 15 C 1.34662 * 122.22913 * 180.02562 * 2 1 3 16 16 S 1.76195 * 125.92965 * 359.97438 * 15 2 1 17 17 C 1.76198 * 100.00227 * 179.97438 * 16 15 2 18 18 H 1.08009 * 119.99719 * 359.97438 * 17 16 15 19 19 C 1.38430 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31803 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47308 * 89.99875 * 21 19 17 23 23 H 1.48498 * 109.47127 * 209.99938 * 21 19 17 24 24 H 1.48504 * 109.47249 * 329.99783 * 21 19 17 25 25 H 1.09001 * 109.47374 * 89.97727 * 1 2 3 26 26 H 1.08996 * 109.47760 * 209.97735 * 1 2 3 27 27 H 1.09001 * 109.47478 * 329.97940 * 1 2 3 28 28 H 0.97004 * 120.00203 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.47228 * 297.32576 * 9 8 6 30 30 H 1.09002 * 109.47150 * 57.32479 * 9 8 6 31 31 H 1.09005 * 109.47227 * 177.32170 * 9 8 6 32 32 H 1.08991 * 110.51174 * 359.97438 * 10 8 6 33 33 H 1.08995 * 110.51247 * 122.71152 * 10 8 6 34 34 H 1.08997 * 110.37024 * 94.85221 * 11 10 8 35 35 H 1.08995 * 110.37315 * 217.18852 * 11 10 8 36 36 H 1.08995 * 110.37333 * 200.65712 * 13 12 11 37 37 H 1.08999 * 110.46531 * 78.36420 * 13 12 11 38 38 H 0.96994 * 120.00225 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0545 -0.0011 6 6 5.7298 1.8099 -0.0011 7 8 6.1355 0.6669 -0.0010 8 6 6.7077 2.9565 -0.0012 9 6 6.4679 3.8672 -1.2070 10 6 8.1601 2.4293 -0.0018 11 6 8.7584 2.9763 1.3132 12 8 7.9586 4.1370 1.6279 13 6 6.6004 3.7596 1.3141 14 16 3.9345 -0.7101 -0.0086 15 6 2.2251 -1.1391 -0.0005 16 16 1.5696 -2.7746 -0.0006 17 6 3.0664 -3.7042 -0.0021 18 1 4.0186 -3.1945 -0.0031 19 6 3.0219 -5.0878 -0.0032 20 7 1.8599 -5.7098 -0.0025 21 14 4.6088 -6.0733 -0.0041 22 1 5.0295 -6.3354 1.3957 23 1 4.3896 -7.3639 -0.7050 24 1 5.6689 -5.3038 -0.7037 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5134 27 1 -0.3634 0.8898 0.5141 28 1 4.0800 2.9687 -0.0015 29 1 6.6410 3.3068 -2.1257 30 1 5.4398 4.2290 -1.1903 31 1 7.1521 4.7148 -1.1639 32 1 8.1708 1.3395 -0.0016 33 1 8.7071 2.8178 -0.8608 34 1 8.6761 2.2325 2.1058 35 1 9.8000 3.2617 1.1663 36 1 5.9842 4.6467 1.1679 37 1 6.1853 3.1365 2.1063 38 1 1.8287 -6.6792 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330853795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:33 Heat of formation + Delta-G solvation = -48.406998 kcal Electronic energy + Delta-G solvation = -23084.042634 eV Core-core repulsion = 19565.213889 eV Total energy + Delta-G solvation = -3518.828745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08262 -39.09639 -38.36118 -34.92803 -33.88950 -32.84853 -30.65880 -29.91798 -27.15360 -26.95663 -25.79788 -24.64847 -23.14112 -22.03043 -20.67917 -19.27273 -18.17940 -17.68419 -17.10237 -16.45570 -15.84920 -15.75185 -15.59915 -15.15805 -15.12838 -14.48788 -14.11846 -13.89865 -13.66554 -13.23628 -12.96750 -12.71716 -12.66710 -12.44086 -12.09446 -11.90860 -11.61416 -11.42581 -11.40573 -11.28687 -11.13973 -11.09027 -10.76901 -10.62416 -10.28699 -10.09980 -9.85935 -9.56382 -9.10415 -8.78530 -8.68884 -7.84257 -6.62555 -6.53443 -4.30476 1.33014 1.84224 2.35001 2.48691 2.78361 3.05609 3.08211 3.15317 3.32536 3.56476 3.63246 3.93987 3.95757 4.31654 4.40028 4.60472 4.80244 4.84016 4.88215 5.00919 5.13732 5.17926 5.23273 5.35082 5.39773 5.45350 5.62509 5.74403 5.76880 5.95432 6.10840 6.21139 6.37831 6.42349 6.45893 6.91973 7.11143 7.30609 7.87677 8.01586 8.48007 8.85997 10.43237 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003750 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.536286 B = 7464.725845 C = 9014.395623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.473 5.473 4 C 0.184 3.816 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.499 6.499 8 C -0.106 4.106 9 C -0.137 4.137 10 C -0.144 4.144 11 C 0.044 3.956 12 O -0.368 6.368 13 C 0.058 3.942 14 S 0.199 5.801 15 C -0.250 4.250 16 S 0.152 5.848 17 C -0.557 4.557 18 H 0.089 0.911 19 C 0.083 3.917 20 N -0.862 5.862 21 Si 0.924 3.076 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.265 1.265 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.414 0.586 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 17.007 -0.183 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.194 5.194 4 C -0.187 4.187 5 N -0.260 5.260 6 C 0.302 3.698 7 O -0.373 6.373 8 C -0.110 4.110 9 C -0.195 4.195 10 C -0.182 4.182 11 C -0.033 4.033 12 O -0.287 6.287 13 C -0.019 4.019 14 S 0.443 5.557 15 C -0.487 4.487 16 S 0.402 5.598 17 C -0.706 4.706 18 H 0.107 0.893 19 C -0.128 4.128 20 N -0.496 5.496 21 Si 0.749 3.251 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.189 1.189 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.251 0.749 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.135 15.574 -0.108 17.571 hybrid contribution 1.010 0.151 -0.111 1.027 sum 9.145 15.724 -0.219 18.192 Atomic orbital electron populations 1.20115 0.88013 1.02136 1.01806 1.19034 0.96713 0.84564 1.12108 1.65802 1.02807 1.32418 1.18397 1.23766 0.89887 0.92848 1.12185 1.42355 1.04314 1.08089 1.71194 1.20447 0.81795 0.90966 0.76565 1.90687 1.76801 1.22261 1.47557 1.22097 0.95459 0.94307 0.99159 1.21884 1.02746 0.99036 0.95818 1.23083 0.91802 1.04212 0.99091 1.23493 0.96188 0.87920 0.95666 1.89133 1.17025 1.35547 1.86978 1.23479 0.85875 0.99219 0.93374 1.85825 1.01866 0.95425 1.72612 1.28778 1.01222 1.06772 1.11899 1.83077 1.10996 0.84360 1.81329 1.23268 0.93584 0.94063 1.59685 0.89342 1.25023 0.98280 0.96659 0.92881 1.70006 1.24413 1.10364 1.44767 0.86034 0.81238 0.78793 0.79038 1.19592 1.20235 1.18904 0.91865 0.91036 0.91915 0.74873 0.91305 0.91678 0.90419 0.87695 0.89642 0.91753 0.88601 0.87890 0.91506 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 2 C 0.02 0.38 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.31 10.55 -9.78 -0.10 -9.42 16 4 C 0.18 3.46 8.40 -87.20 -0.73 2.72 16 5 N -0.61 -8.58 5.28 -11.78 -0.06 -8.64 16 6 C 0.52 7.09 6.38 -10.99 -0.07 7.02 16 7 O -0.50 -8.75 12.80 5.55 0.07 -8.67 16 8 C -0.11 -1.02 0.89 -154.09 -0.14 -1.16 16 9 C -0.14 -1.01 8.19 37.16 0.30 -0.71 16 10 C -0.14 -1.35 6.32 -25.16 -0.16 -1.51 16 11 C 0.04 0.39 7.63 37.93 0.29 0.68 16 12 O -0.37 -3.76 11.65 -35.23 -0.41 -4.17 16 13 C 0.06 0.52 6.72 37.93 0.25 0.77 16 14 S 0.20 4.33 18.35 -107.50 -1.97 2.36 16 15 C -0.25 -5.71 6.67 29.47 0.20 -5.52 16 16 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 17 C -0.56 -15.10 9.26 30.80 0.29 -14.81 16 18 H 0.09 2.38 5.97 -52.48 -0.31 2.07 16 19 C 0.08 2.20 5.49 -17.49 -0.10 2.10 16 20 N -0.86 -23.64 13.22 55.47 0.73 -22.91 16 21 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.41 4.40 8.12 -40.82 -0.33 4.07 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 7.44 -51.93 -0.39 0.02 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 1.19 6.50 -51.93 -0.34 0.86 16 33 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.69 7.87 -51.93 -0.41 0.28 16 37 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 38 H 0.28 7.05 8.32 -40.82 -0.34 6.71 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -31.44 342.20 -8.55 -39.99 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.64 Total: 0.52 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.07 Total: -11.30 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.57 Total: -40.97 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.34 Total: -12.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -4.20 Total: 3.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.44 -8.55 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.421 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds