Wall clock time and date at job start Tue Mar 31 2020 14:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31589 * 122.23328 * 2 1 4 4 C 1.29947 * 117.14146 * 180.02562 * 3 2 1 5 5 N 1.38888 * 125.36917 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00395 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.52999 * 110.56564 * 302.67861 * 8 6 5 10 10 C 1.54517 * 110.50933 * 180.02562 * 8 6 5 11 11 C 1.54479 * 104.06037 * 241.35273 * 10 8 6 12 12 O 1.44433 * 104.80518 * 336.02227 * 11 10 8 13 13 C 1.44422 * 105.27452 * 40.51075 * 12 11 10 14 14 S 1.76151 * 109.26733 * 0.25737 * 4 3 2 15 15 C 1.34662 * 122.22913 * 180.02562 * 2 1 3 16 16 S 1.76195 * 125.92965 * 359.97438 * 15 2 1 17 17 C 1.76198 * 100.00227 * 179.97438 * 16 15 2 18 18 H 1.08009 * 119.99719 * 359.97438 * 17 16 15 19 19 C 1.38430 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31803 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47308 * 89.99875 * 21 19 17 23 23 H 1.48498 * 109.47127 * 209.99938 * 21 19 17 24 24 H 1.48504 * 109.47249 * 329.99783 * 21 19 17 25 25 H 1.09001 * 109.47374 * 89.97727 * 1 2 3 26 26 H 1.08996 * 109.47760 * 209.97735 * 1 2 3 27 27 H 1.09001 * 109.47478 * 329.97940 * 1 2 3 28 28 H 0.97004 * 120.00203 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.47228 * 297.32576 * 9 8 6 30 30 H 1.09002 * 109.47150 * 57.32479 * 9 8 6 31 31 H 1.09005 * 109.47227 * 177.32170 * 9 8 6 32 32 H 1.08991 * 110.51174 * 359.97438 * 10 8 6 33 33 H 1.08995 * 110.51247 * 122.71152 * 10 8 6 34 34 H 1.08997 * 110.37024 * 94.85221 * 11 10 8 35 35 H 1.08995 * 110.37315 * 217.18852 * 11 10 8 36 36 H 1.08995 * 110.37333 * 200.65712 * 13 12 11 37 37 H 1.08999 * 110.46531 * 78.36420 * 13 12 11 38 38 H 0.96994 * 120.00225 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0545 -0.0011 6 6 5.7298 1.8099 -0.0011 7 8 6.1355 0.6669 -0.0010 8 6 6.7077 2.9565 -0.0012 9 6 6.4679 3.8672 -1.2070 10 6 8.1601 2.4293 -0.0018 11 6 8.7584 2.9763 1.3132 12 8 7.9586 4.1370 1.6279 13 6 6.6004 3.7596 1.3141 14 16 3.9345 -0.7101 -0.0086 15 6 2.2251 -1.1391 -0.0005 16 16 1.5696 -2.7746 -0.0006 17 6 3.0664 -3.7042 -0.0021 18 1 4.0186 -3.1945 -0.0031 19 6 3.0219 -5.0878 -0.0032 20 7 1.8599 -5.7098 -0.0025 21 14 4.6088 -6.0733 -0.0041 22 1 5.0295 -6.3354 1.3957 23 1 4.3896 -7.3639 -0.7050 24 1 5.6689 -5.3038 -0.7037 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5134 27 1 -0.3634 0.8898 0.5141 28 1 4.0800 2.9687 -0.0015 29 1 6.6410 3.3068 -2.1257 30 1 5.4398 4.2290 -1.1903 31 1 7.1521 4.7148 -1.1639 32 1 8.1708 1.3395 -0.0016 33 1 8.7071 2.8178 -0.8608 34 1 8.6761 2.2325 2.1058 35 1 9.8000 3.2617 1.1663 36 1 5.9842 4.6467 1.1679 37 1 6.1853 3.1365 2.1063 38 1 1.8287 -6.6792 -0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330853795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:33 Heat of formation + Delta-G solvation = -69.401285 kcal Electronic energy + Delta-G solvation = -23084.953014 eV Core-core repulsion = 19565.213889 eV Total energy + Delta-G solvation = -3519.739125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14586 -40.44387 -39.60059 -36.28865 -34.83268 -34.72654 -32.05571 -30.74555 -28.80646 -27.73731 -27.62395 -25.94367 -23.97096 -23.22551 -22.08903 -20.68532 -19.65906 -19.16332 -18.38447 -17.52880 -17.09393 -17.08975 -16.88010 -16.81697 -16.12198 -15.81109 -15.53425 -15.05057 -14.93925 -14.46688 -14.39072 -13.68356 -13.55294 -13.45100 -13.37087 -13.25001 -13.16975 -13.08226 -12.88779 -12.37293 -12.26272 -12.16263 -12.09389 -12.04516 -11.86721 -11.36316 -11.24671 -10.83778 -10.79309 -10.50560 -10.49279 -9.55353 -8.58945 -8.38878 -6.31410 -0.26804 0.18896 0.80143 1.09781 1.25459 1.33026 1.38665 1.46031 1.61383 1.98429 2.13237 2.80465 2.85342 3.07985 3.11538 3.48015 3.65698 3.71720 3.83974 4.11997 4.18039 4.42273 4.50673 4.59977 4.63218 4.72551 4.79668 4.82012 4.84575 4.93037 4.96112 4.99602 5.07676 5.18762 5.28164 5.45710 5.65826 5.86887 6.00684 6.68150 6.83501 6.85878 8.48871 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003750 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.536286 B = 7464.725845 C = 9014.395623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.479 5.479 4 C 0.225 3.775 5 N -0.599 5.599 6 C 0.519 3.481 7 O -0.534 6.534 8 C -0.097 4.097 9 C -0.136 4.136 10 C -0.146 4.146 11 C 0.043 3.957 12 O -0.377 6.377 13 C 0.058 3.942 14 S 0.156 5.844 15 C -0.280 4.280 16 S 0.102 5.898 17 C -0.577 4.577 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.895 5.895 21 Si 0.985 3.015 22 H -0.263 1.263 23 H -0.263 1.263 24 H -0.268 1.268 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.435 0.565 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 20.113 -0.442 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.201 5.201 4 C -0.148 4.148 5 N -0.250 5.250 6 C 0.306 3.694 7 O -0.409 6.409 8 C -0.100 4.100 9 C -0.193 4.193 10 C -0.183 4.183 11 C -0.033 4.033 12 O -0.296 6.296 13 C -0.020 4.020 14 S 0.400 5.600 15 C -0.516 4.516 16 S 0.349 5.651 17 C -0.725 4.725 18 H 0.098 0.902 19 C -0.171 4.171 20 N -0.530 5.530 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.188 1.188 24 H -0.192 1.192 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.277 0.723 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.313 18.751 -0.365 20.940 hybrid contribution 0.762 -0.458 -0.019 0.889 sum 10.075 18.294 -0.385 20.888 Atomic orbital electron populations 1.20246 0.85623 1.03169 1.03125 1.19708 0.98439 0.84137 1.08192 1.66020 1.02626 1.31327 1.20140 1.24113 0.90228 0.92923 1.07550 1.42529 1.03894 1.07950 1.70655 1.21415 0.81792 0.91679 0.74558 1.90694 1.77229 1.24377 1.48636 1.22174 0.93942 0.92926 1.00995 1.21944 1.04396 0.98898 0.94053 1.23116 0.92064 1.02798 1.00372 1.23573 0.97257 0.87540 0.94968 1.89134 1.17487 1.35870 1.87075 1.23597 0.85942 1.00145 0.92272 1.86028 1.02380 0.98179 1.73404 1.28593 1.01587 1.06069 1.15318 1.82889 1.11144 0.86174 1.84848 1.23453 0.93883 0.94868 1.60340 0.90182 1.25868 1.01360 0.97408 0.92450 1.70083 1.26128 1.10772 1.46000 0.85144 0.77266 0.77663 0.79349 1.18816 1.18776 1.19191 0.90287 0.91393 0.89424 0.72307 0.91773 0.90063 0.88425 0.90118 0.87577 0.92660 0.86416 0.84866 0.92693 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 10.02 71.23 0.71 -1.35 16 2 C 0.04 1.50 6.73 41.77 0.28 1.78 16 3 N -0.48 -17.94 10.55 -184.87 -1.95 -19.89 16 4 C 0.22 8.11 8.40 179.15 1.50 9.61 16 5 N -0.60 -15.33 5.28 -309.57 -1.63 -16.96 16 6 C 0.52 13.29 6.38 87.66 0.56 13.85 16 7 O -0.53 -18.55 12.80 -3.05 -0.04 -18.59 16 8 C -0.10 -1.59 0.89 -51.91 -0.05 -1.64 16 9 C -0.14 -1.46 8.19 71.98 0.59 -0.87 16 10 C -0.15 -2.44 6.32 31.61 0.20 -2.24 16 11 C 0.04 0.67 7.63 72.48 0.55 1.22 16 12 O -0.38 -6.59 11.65 -148.98 -1.74 -8.32 16 13 C 0.06 0.85 6.72 72.49 0.49 1.34 16 14 S 0.16 6.88 18.35 -56.49 -1.04 5.84 16 15 C -0.28 -13.07 6.67 67.00 0.45 -12.62 16 16 S 0.10 5.30 20.74 -56.49 -1.17 4.13 16 17 C -0.58 -32.59 9.26 67.87 0.63 -31.96 16 18 H 0.08 4.51 5.97 -2.91 -0.02 4.50 16 19 C 0.04 2.00 5.49 84.74 0.46 2.46 16 20 N -0.90 -50.61 13.22 21.59 0.29 -50.33 16 21 Si 0.98 43.04 29.55 68.60 2.03 45.07 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 2.33 7.37 -2.39 -0.02 2.31 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.44 7.61 8.12 -92.71 -0.75 6.85 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.63 7.44 -2.39 -0.02 0.61 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 1.80 6.50 -2.39 -0.02 1.78 16 33 H 0.11 1.33 7.73 -2.39 -0.02 1.32 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.13 1.16 7.87 -2.39 -0.02 1.14 16 37 H 0.05 0.95 7.86 -2.39 -0.02 0.93 16 38 H 0.28 14.68 8.32 -92.71 -0.77 13.91 16 Total: -1.00 -70.50 342.20 1.48 -69.01 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.36 Total: 10.47 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 6.38 Total: -20.42 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -3.30 Total: -87.18 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.77 Total: -26.91 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 12.17 SS G_CDS: -2.21 Total: 9.97 kcal Total: -70.50 1.48 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.387 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds