Wall clock time and date at job start Tue Mar 31 2020 14:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31589 * 122.23285 * 2 1 4 4 C 1.29944 * 117.14095 * 180.02562 * 3 2 1 5 5 N 1.38884 * 125.36645 * 180.02562 * 4 3 2 6 6 C 1.34782 * 120.00251 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99373 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00224 * 180.02562 * 6 5 4 9 9 C 1.53000 * 110.45500 * 59.30377 * 8 6 5 10 10 C 1.54514 * 110.51208 * 181.90763 * 8 6 5 11 11 C 1.54797 * 103.91370 * 118.61098 * 10 8 6 12 12 O 1.44428 * 104.85766 * 336.12094 * 11 10 8 13 13 C 1.44428 * 105.27518 * 40.46091 * 12 11 10 14 14 S 1.76139 * 109.26608 * 359.73538 * 4 3 2 15 15 C 1.34652 * 122.22461 * 180.02562 * 2 1 3 16 16 S 1.76197 * 125.93663 * 359.97438 * 15 2 1 17 17 C 1.76199 * 100.00146 * 180.02562 * 16 15 2 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38431 * 119.99970 * 179.97438 * 17 16 15 20 20 N 1.31814 * 119.99880 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99955 * 0.27764 * 19 17 16 22 22 H 1.48501 * 109.47229 * 269.72025 * 21 19 17 23 23 H 1.48501 * 109.47135 * 29.72670 * 21 19 17 24 24 H 1.48501 * 109.47274 * 149.72236 * 21 19 17 25 25 H 1.09001 * 109.47368 * 269.97800 * 1 2 3 26 26 H 1.08995 * 109.47023 * 29.97892 * 1 2 3 27 27 H 1.09003 * 109.47468 * 149.97806 * 1 2 3 28 28 H 0.97000 * 120.00409 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47230 * 60.70257 * 9 8 6 30 30 H 1.09011 * 109.46693 * 180.69959 * 9 8 6 31 31 H 1.08996 * 109.46835 * 300.69425 * 9 8 6 32 32 H 1.08997 * 110.51007 * 237.29518 * 10 8 6 33 33 H 1.08998 * 110.50717 * 359.97438 * 10 8 6 34 34 H 1.08992 * 110.38715 * 217.25247 * 11 10 8 35 35 H 1.08999 * 110.39611 * 94.99384 * 11 10 8 36 36 H 1.09000 * 110.37542 * 200.66063 * 13 12 11 37 37 H 1.08994 * 110.46637 * 78.36555 * 13 12 11 38 38 H 0.97005 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9978 -0.0005 5 7 4.4044 2.0545 -0.0001 6 6 5.7298 1.8099 -0.0002 7 8 6.1355 0.6669 -0.0011 8 6 6.7077 2.9565 0.0008 9 6 6.4977 3.8372 1.2342 10 6 8.1595 2.4300 -0.0476 11 6 8.7215 3.0090 -1.3687 12 8 7.5590 3.2537 -2.1900 13 6 6.5645 3.7913 -1.2911 14 16 3.9345 -0.7100 0.0066 15 6 2.2251 -1.1391 -0.0005 16 16 1.5696 -2.7746 -0.0006 17 6 3.0665 -3.7042 -0.0006 18 1 4.0186 -3.1945 -0.0001 19 6 3.0220 -5.0878 -0.0001 20 7 4.1418 -5.7831 -0.0006 21 14 1.3751 -5.9693 -0.0073 22 1 0.9354 -6.2082 1.3908 23 1 0.3682 -5.1313 -0.7067 24 1 1.5126 -7.2692 -0.7120 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 4.0800 2.9687 0.0010 29 1 6.6602 3.2455 2.1351 30 1 7.2040 4.6672 1.2124 31 1 5.4796 4.2263 1.2337 32 1 8.7283 2.7990 0.8058 33 1 8.1699 1.3403 -0.0719 34 1 9.3807 2.2865 -1.8498 35 1 9.2548 3.9404 -1.1787 36 1 5.5667 3.6698 -1.7127 37 1 6.7639 4.8432 -1.0872 38 1 4.1106 -6.7527 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330853797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:36 Heat of formation + Delta-G solvation = -44.353875 kcal Electronic energy + Delta-G solvation = -23135.645175 eV Core-core repulsion = 19616.992186 eV Total energy + Delta-G solvation = -3518.652988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08287 -39.09395 -38.35892 -34.94533 -34.01285 -32.75743 -30.73735 -29.85541 -27.19229 -26.81813 -25.90376 -24.77214 -23.30489 -21.96881 -20.72179 -19.33161 -18.20272 -17.60906 -16.95258 -16.40020 -16.17234 -15.78072 -15.46082 -15.22996 -15.18659 -14.51615 -14.06409 -13.97772 -13.57484 -13.25940 -13.11706 -12.80300 -12.78141 -12.24085 -12.07202 -11.95421 -11.76301 -11.57257 -11.43767 -11.34445 -11.28996 -11.02137 -10.80192 -10.64434 -10.21712 -10.13472 -9.79214 -9.47298 -9.17859 -8.86769 -8.78194 -7.90128 -6.73780 -6.55832 -4.29214 1.28928 1.77853 2.36229 2.43549 2.73372 2.85930 3.10047 3.19774 3.36982 3.48329 3.65704 3.94476 4.02826 4.24252 4.47991 4.49574 4.61332 4.81597 4.84101 4.86969 5.08991 5.09271 5.16769 5.30495 5.34463 5.45667 5.55782 5.65820 5.85113 5.91074 6.05663 6.11582 6.32683 6.38789 6.42951 6.85424 7.08111 7.67024 7.89580 8.23677 8.40804 8.83811 10.52046 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.003545 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.110809 B = 7896.300212 C = 9004.553141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.480 5.480 4 C 0.192 3.808 5 N -0.614 5.614 6 C 0.520 3.480 7 O -0.493 6.493 8 C -0.108 4.108 9 C -0.139 4.139 10 C -0.145 4.145 11 C 0.046 3.954 12 O -0.367 6.367 13 C 0.056 3.944 14 S 0.232 5.768 15 C -0.238 4.238 16 S 0.055 5.945 17 C -0.545 4.545 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.857 5.857 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.236 1.236 24 H -0.265 1.265 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.413 0.587 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 19.464 1.043 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 N -0.202 5.202 4 C -0.179 4.179 5 N -0.263 5.263 6 C 0.305 3.695 7 O -0.366 6.366 8 C -0.111 4.111 9 C -0.196 4.196 10 C -0.183 4.183 11 C -0.031 4.031 12 O -0.286 6.286 13 C -0.021 4.021 14 S 0.478 5.522 15 C -0.475 4.475 16 S 0.303 5.697 17 C -0.694 4.694 18 H 0.122 0.878 19 C -0.109 4.109 20 N -0.490 5.490 21 Si 0.676 3.324 22 H -0.186 1.186 23 H -0.160 1.160 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.251 0.749 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.002 17.810 0.812 18.272 hybrid contribution -0.251 0.440 0.281 0.579 sum 3.752 18.250 1.092 18.664 Atomic orbital electron populations 1.20146 0.87968 1.02230 1.01906 1.19107 0.96792 0.84589 1.10649 1.65856 1.02842 1.32199 1.19302 1.23970 0.90019 0.93417 1.10458 1.42374 1.04365 1.08020 1.71536 1.20436 0.81698 0.91070 0.76302 1.90701 1.76687 1.22245 1.46961 1.22112 0.95687 0.94518 0.98823 1.21867 1.02943 0.99110 0.95681 1.23175 0.91772 1.04634 0.98687 1.23523 0.89027 0.99992 0.90562 1.89194 1.23682 1.84069 1.31610 1.23548 0.94362 0.96664 0.87535 1.86187 1.00623 0.94349 1.71085 1.28172 1.01681 1.04517 1.13103 1.82452 1.13458 0.89136 1.84691 1.22667 0.92404 0.94508 1.59801 0.87766 1.24741 0.97385 0.96218 0.92597 1.70014 1.26469 1.07675 1.44868 0.86813 0.83865 0.81392 0.80362 1.18558 1.15975 1.18962 0.91706 0.91710 0.91081 0.74907 0.91062 0.90612 0.91515 0.89444 0.87725 0.88552 0.92025 0.88719 0.90522 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.01 0.36 -0.68 16 2 C 0.03 0.62 6.73 -83.96 -0.57 0.06 16 3 N -0.48 -9.35 10.55 -9.79 -0.10 -9.46 16 4 C 0.19 3.63 8.40 -87.20 -0.73 2.90 16 5 N -0.61 -8.78 5.05 -11.78 -0.06 -8.84 16 6 C 0.52 7.45 6.44 -10.99 -0.07 7.38 16 7 O -0.49 -9.17 12.80 5.55 0.07 -9.10 16 8 C -0.11 -1.04 0.88 -154.09 -0.14 -1.17 16 9 C -0.14 -0.91 8.19 37.16 0.30 -0.61 16 10 C -0.14 -1.38 6.34 -24.99 -0.16 -1.53 16 11 C 0.05 0.41 7.64 38.10 0.29 0.70 16 12 O -0.37 -4.31 11.65 -35.23 -0.41 -4.72 16 13 C 0.06 0.50 6.72 37.94 0.25 0.76 16 14 S 0.23 5.19 18.35 -107.50 -1.97 3.22 16 15 C -0.24 -5.42 6.67 29.46 0.20 -5.22 16 16 S 0.06 1.32 18.70 -107.50 -2.01 -0.69 16 17 C -0.55 -15.26 9.80 30.80 0.30 -14.95 16 18 H 0.10 3.13 6.21 -52.49 -0.33 2.80 16 19 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 20 N -0.86 -24.81 13.98 55.47 0.78 -24.03 16 21 Si 0.85 19.71 27.73 -169.99 -4.71 14.99 16 22 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.24 -5.21 6.73 56.52 0.38 -4.83 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 28 H 0.41 4.39 8.19 -40.82 -0.33 4.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.34 8.12 -51.92 -0.42 -0.08 16 31 H 0.07 0.37 7.59 -51.93 -0.39 -0.03 16 32 H 0.09 0.61 7.73 -51.93 -0.40 0.21 16 33 H 0.10 1.30 6.50 -51.93 -0.34 0.96 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.84 7.59 -51.93 -0.39 0.45 16 37 H 0.08 0.46 7.85 -51.93 -0.41 0.06 16 38 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -33.23 339.28 -8.03 -41.26 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.67 Total: 1.90 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.05 Total: -9.65 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.61 Total: -42.33 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.34 Total: -13.82 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 14.99 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -3.98 Total: 2.53 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.23 -8.03 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.089 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds