Wall clock time and date at job start Tue Mar 31 2020 14:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31589 * 122.23285 * 2 1 4 4 C 1.29944 * 117.14095 * 180.02562 * 3 2 1 5 5 N 1.38884 * 125.36645 * 180.02562 * 4 3 2 6 6 C 1.34782 * 120.00251 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99373 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00224 * 180.02562 * 6 5 4 9 9 C 1.53000 * 110.45500 * 59.30377 * 8 6 5 10 10 C 1.54514 * 110.51208 * 181.90763 * 8 6 5 11 11 C 1.54797 * 103.91370 * 118.61098 * 10 8 6 12 12 O 1.44428 * 104.85766 * 336.12094 * 11 10 8 13 13 C 1.44428 * 105.27518 * 40.46091 * 12 11 10 14 14 S 1.76139 * 109.26608 * 359.73538 * 4 3 2 15 15 C 1.34652 * 122.22461 * 180.02562 * 2 1 3 16 16 S 1.76197 * 125.93663 * 359.97438 * 15 2 1 17 17 C 1.76199 * 100.00146 * 180.02562 * 16 15 2 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38431 * 119.99970 * 179.97438 * 17 16 15 20 20 N 1.31814 * 119.99880 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99955 * 0.27764 * 19 17 16 22 22 H 1.48501 * 109.47229 * 269.72025 * 21 19 17 23 23 H 1.48501 * 109.47135 * 29.72670 * 21 19 17 24 24 H 1.48501 * 109.47274 * 149.72236 * 21 19 17 25 25 H 1.09001 * 109.47368 * 269.97800 * 1 2 3 26 26 H 1.08995 * 109.47023 * 29.97892 * 1 2 3 27 27 H 1.09003 * 109.47468 * 149.97806 * 1 2 3 28 28 H 0.97000 * 120.00409 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47230 * 60.70257 * 9 8 6 30 30 H 1.09011 * 109.46693 * 180.69959 * 9 8 6 31 31 H 1.08996 * 109.46835 * 300.69425 * 9 8 6 32 32 H 1.08997 * 110.51007 * 237.29518 * 10 8 6 33 33 H 1.08998 * 110.50717 * 359.97438 * 10 8 6 34 34 H 1.08992 * 110.38715 * 217.25247 * 11 10 8 35 35 H 1.08999 * 110.39611 * 94.99384 * 11 10 8 36 36 H 1.09000 * 110.37542 * 200.66063 * 13 12 11 37 37 H 1.08994 * 110.46637 * 78.36555 * 13 12 11 38 38 H 0.97005 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9978 -0.0005 5 7 4.4044 2.0545 -0.0001 6 6 5.7298 1.8099 -0.0002 7 8 6.1355 0.6669 -0.0011 8 6 6.7077 2.9565 0.0008 9 6 6.4977 3.8372 1.2342 10 6 8.1595 2.4300 -0.0476 11 6 8.7215 3.0090 -1.3687 12 8 7.5590 3.2537 -2.1900 13 6 6.5645 3.7913 -1.2911 14 16 3.9345 -0.7100 0.0066 15 6 2.2251 -1.1391 -0.0005 16 16 1.5696 -2.7746 -0.0006 17 6 3.0665 -3.7042 -0.0006 18 1 4.0186 -3.1945 -0.0001 19 6 3.0220 -5.0878 -0.0001 20 7 4.1418 -5.7831 -0.0006 21 14 1.3751 -5.9693 -0.0073 22 1 0.9354 -6.2082 1.3908 23 1 0.3682 -5.1313 -0.7067 24 1 1.5126 -7.2692 -0.7120 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 4.0800 2.9687 0.0010 29 1 6.6602 3.2455 2.1351 30 1 7.2040 4.6672 1.2124 31 1 5.4796 4.2263 1.2337 32 1 8.7283 2.7990 0.8058 33 1 8.1699 1.3403 -0.0719 34 1 9.3807 2.2865 -1.8498 35 1 9.2548 3.9404 -1.1787 36 1 5.5667 3.6698 -1.7127 37 1 6.7639 4.8432 -1.0872 38 1 4.1106 -6.7527 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330853797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:35 Heat of formation + Delta-G solvation = -68.317833 kcal Electronic energy + Delta-G solvation = -23136.684330 eV Core-core repulsion = 19616.992186 eV Total energy + Delta-G solvation = -3519.692143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16312 -40.49024 -39.56121 -36.33376 -34.84755 -34.83885 -32.13434 -30.65614 -28.82649 -27.92829 -27.43528 -26.03972 -24.20307 -23.14275 -22.14091 -20.73195 -19.70270 -19.19272 -18.21128 -17.55667 -17.32949 -17.23232 -16.99562 -16.45968 -16.32753 -15.80899 -15.45301 -15.27900 -15.02262 -14.52594 -14.15749 -13.81644 -13.64108 -13.54176 -13.46125 -13.33068 -13.19235 -13.10287 -12.78910 -12.52892 -12.28177 -12.20755 -12.07770 -11.94784 -11.72689 -11.43178 -11.30437 -10.97719 -10.71343 -10.62548 -10.57367 -9.65715 -8.63269 -8.55985 -6.36711 -0.33274 0.11447 0.73106 1.03606 1.10012 1.27832 1.38229 1.45162 1.62101 1.92969 2.12828 2.48678 2.75586 2.92323 3.10921 3.37516 3.65734 3.77656 3.89827 4.12572 4.25770 4.34641 4.48547 4.60033 4.61805 4.70799 4.78965 4.83245 4.83968 4.90018 4.91348 4.99284 5.15499 5.18968 5.41979 5.58989 5.72104 5.87211 6.05891 6.67746 6.74845 6.77417 8.49538 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.003545 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.110809 B = 7896.300212 C = 9004.553141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 N -0.482 5.482 4 C 0.232 3.768 5 N -0.600 5.600 6 C 0.515 3.485 7 O -0.537 6.537 8 C -0.098 4.098 9 C -0.136 4.136 10 C -0.148 4.148 11 C 0.045 3.955 12 O -0.402 6.402 13 C 0.055 3.945 14 S 0.158 5.842 15 C -0.276 4.276 16 S 0.064 5.936 17 C -0.569 4.569 18 H 0.066 0.934 19 C 0.049 3.951 20 N -0.908 5.908 21 Si 0.915 3.085 22 H -0.251 1.251 23 H -0.219 1.219 24 H -0.254 1.254 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.436 0.564 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 23.193 1.434 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.204 5.204 4 C -0.141 4.141 5 N -0.252 5.252 6 C 0.302 3.698 7 O -0.412 6.412 8 C -0.102 4.102 9 C -0.193 4.193 10 C -0.185 4.185 11 C -0.031 4.031 12 O -0.321 6.321 13 C -0.022 4.022 14 S 0.404 5.596 15 C -0.510 4.510 16 S 0.309 5.691 17 C -0.718 4.718 18 H 0.084 0.916 19 C -0.158 4.158 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.175 1.175 23 H -0.142 1.142 24 H -0.178 1.178 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.278 0.722 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.584 21.616 1.203 21.803 hybrid contribution 0.376 -0.364 0.157 0.547 sum 2.961 21.252 1.361 21.500 Atomic orbital electron populations 1.20326 0.84924 1.03581 1.03566 1.19872 0.98739 0.83879 1.06434 1.66091 1.02381 1.31207 1.20704 1.24247 0.90405 0.93108 1.06300 1.42547 1.03917 1.07931 1.70802 1.21650 0.81933 0.91967 0.74224 1.90713 1.77273 1.24771 1.48449 1.22240 0.93715 0.92975 1.01245 1.21949 1.04999 0.99165 0.93180 1.23210 0.92431 1.02403 1.00499 1.23675 0.88427 1.01480 0.89558 1.89160 1.25061 1.84648 1.33269 1.23784 0.93828 0.98358 0.86196 1.86587 1.02383 0.97992 1.72621 1.28116 1.01367 1.04634 1.16931 1.81855 1.10692 0.89311 1.87255 1.22856 0.93276 0.95511 1.60112 0.91580 1.25741 1.01441 0.96817 0.91818 1.70124 1.29138 1.08274 1.46790 0.85886 0.79142 0.80490 0.81105 1.17533 1.14211 1.17753 0.89725 0.89222 0.90837 0.72207 0.91966 0.87239 0.89977 0.86489 0.91592 0.89226 0.88529 0.89099 0.86316 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.96 10.02 71.24 0.71 -1.24 16 2 C 0.05 2.05 6.73 41.77 0.28 2.33 16 3 N -0.48 -17.87 10.55 -184.88 -1.95 -19.82 16 4 C 0.23 8.63 8.40 179.15 1.50 10.14 16 5 N -0.60 -16.24 5.05 -309.58 -1.56 -17.80 16 6 C 0.51 14.48 6.44 87.65 0.56 15.04 16 7 O -0.54 -20.89 12.80 -3.05 -0.04 -20.93 16 8 C -0.10 -1.66 0.88 -51.91 -0.05 -1.70 16 9 C -0.14 -1.23 8.19 71.98 0.59 -0.64 16 10 C -0.15 -2.61 6.34 31.72 0.20 -2.41 16 11 C 0.04 0.71 7.64 72.60 0.55 1.27 16 12 O -0.40 -8.76 11.65 -148.98 -1.74 -10.50 16 13 C 0.06 0.80 6.72 72.49 0.49 1.29 16 14 S 0.16 7.43 18.35 -56.49 -1.04 6.40 16 15 C -0.28 -12.74 6.67 67.00 0.45 -12.29 16 16 S 0.06 3.10 18.70 -56.49 -1.06 2.05 16 17 C -0.57 -33.57 9.80 67.87 0.67 -32.90 16 18 H 0.07 4.30 6.21 -2.91 -0.02 4.28 16 19 C 0.05 2.80 5.49 84.74 0.47 3.27 16 20 N -0.91 -55.27 13.98 21.59 0.30 -54.97 16 21 Si 0.91 41.18 27.73 68.60 1.90 43.08 16 22 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.22 -9.17 6.73 99.48 0.67 -8.50 16 24 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.23 7.38 -2.39 -0.02 2.21 16 28 H 0.44 7.91 8.19 -92.71 -0.76 7.15 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.35 8.12 -2.38 -0.02 0.33 16 31 H 0.08 0.52 7.59 -2.39 -0.02 0.50 16 32 H 0.12 1.33 7.73 -2.39 -0.02 1.31 16 33 H 0.07 1.72 6.50 -2.39 -0.02 1.70 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.37 7.59 -2.39 -0.02 1.35 16 37 H 0.12 0.79 7.85 -2.39 -0.02 0.78 16 38 H 0.28 15.65 8.32 -92.70 -0.77 14.88 16 Total: -1.00 -78.58 339.28 1.56 -77.02 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.31 Total: 13.34 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 6.43 Total: -17.85 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.21 Total: -92.59 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.78 Total: -31.43 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.90 Total: 43.08 kcal Atomic # 16 Polarization: 10.54 SS G_CDS: -2.09 Total: 8.44 kcal Total: -78.58 1.56 -77.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.698 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds