Wall clock time and date at job start Tue Mar 31 2020 14:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31589 * 122.23331 * 2 1 4 4 C 1.29950 * 117.13703 * 180.02562 * 3 2 1 5 5 N 1.38893 * 125.36404 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00170 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00362 * 180.02562 * 6 5 4 9 9 H 1.09004 * 110.99076 * 55.79033 * 8 6 5 10 10 C 1.54947 * 111.12099 * 291.55178 * 8 6 5 11 11 O 1.43651 * 105.13733 * 205.63517 * 10 8 6 12 12 C 1.43238 * 109.96745 * 24.42668 * 11 10 8 13 13 H 1.08997 * 109.90689 * 238.72800 * 12 11 10 14 14 C 1.52998 * 109.83008 * 117.80497 * 12 11 10 15 15 C 1.54381 * 107.58928 * 358.28951 * 12 11 10 16 16 S 1.76146 * 109.27029 * 359.73505 * 4 3 2 17 17 C 1.34656 * 122.22610 * 180.02562 * 2 1 3 18 18 S 1.76198 * 125.93136 * 359.97438 * 17 2 1 19 19 C 1.76207 * 100.00096 * 180.02562 * 18 17 2 20 20 H 1.08005 * 119.99695 * 359.97438 * 19 18 17 21 21 C 1.38424 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31808 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00040 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00033 * 23 21 19 27 27 H 1.08997 * 109.46804 * 269.98059 * 1 2 3 28 28 H 1.09003 * 109.46377 * 29.97373 * 1 2 3 29 29 H 1.08994 * 109.47534 * 149.97252 * 1 2 3 30 30 H 0.97003 * 120.00305 * 359.97438 * 5 4 3 31 31 H 1.09002 * 110.31502 * 324.54882 * 10 8 6 32 32 H 1.09005 * 110.31461 * 86.72177 * 10 8 6 33 33 H 1.09010 * 109.47289 * 301.86455 * 14 12 11 34 34 H 1.08999 * 109.47525 * 61.85963 * 14 12 11 35 35 H 1.08995 * 109.47378 * 181.86555 * 14 12 11 36 36 H 1.09005 * 110.84709 * 220.45056 * 15 12 11 37 37 H 1.09001 * 111.02181 * 96.91862 * 15 12 11 38 38 H 0.97001 * 120.00251 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 -0.0005 5 7 4.4046 2.0544 -0.0001 6 6 5.7299 1.8098 -0.0012 7 8 6.1355 0.6667 -0.0022 8 6 6.7078 2.9563 -0.0002 9 1 6.5264 3.6235 0.8425 10 6 6.6654 3.7276 -1.3434 11 8 7.9625 4.3318 -1.4702 12 6 8.9233 3.5921 -0.7077 13 1 9.3874 4.2415 0.0346 14 6 9.9943 3.0192 -1.6380 15 6 8.1732 2.4421 -0.0017 16 16 3.9346 -0.7102 0.0066 17 6 2.2251 -1.1391 -0.0005 18 16 1.5695 -2.7746 -0.0006 19 6 3.0664 -3.7043 -0.0006 20 1 4.0186 -3.1946 -0.0009 21 6 3.0219 -5.0878 -0.0012 22 7 1.8598 -5.7098 -0.0023 23 14 4.6087 -6.0733 -0.0019 24 1 4.2906 -7.5239 -0.0018 25 1 5.3988 -5.7403 1.2106 26 1 5.3984 -5.7393 -1.2144 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 4.0802 2.9686 0.0003 31 1 6.4863 3.0393 -2.1695 32 1 5.8918 4.4950 -1.3149 33 1 9.5225 2.3835 -2.3873 34 1 10.5200 3.8357 -2.1332 35 1 10.7035 2.4303 -1.0564 36 1 8.5384 2.3083 1.0166 37 1 8.2583 1.5144 -0.5675 38 1 1.0357 -5.1981 -0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331264533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:25 Heat of formation + Delta-G solvation = -55.375826 kcal Electronic energy + Delta-G solvation = -22743.819862 eV Core-core repulsion = 19224.688926 eV Total energy + Delta-G solvation = -3519.130936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88211 -39.30555 -38.53972 -34.94900 -32.97853 -32.79988 -32.15270 -30.51591 -27.23764 -26.55128 -25.23075 -24.89802 -22.61282 -21.43581 -21.02153 -19.64132 -18.56548 -17.90266 -17.53067 -16.99404 -16.15691 -15.91569 -15.52329 -14.95959 -14.47534 -14.27085 -14.16536 -13.98387 -13.76735 -13.26505 -12.98370 -12.92324 -12.69266 -12.43556 -12.24929 -12.21967 -11.97359 -11.67671 -11.39173 -11.20990 -11.17072 -10.94783 -10.71175 -10.35958 -10.26162 -9.96058 -9.89138 -9.57810 -9.14657 -8.82586 -8.64805 -7.94886 -7.00520 -6.67487 -4.38317 1.21967 1.72260 2.25509 2.38243 2.67212 3.01980 3.25000 3.25263 3.39923 3.45450 3.47612 3.86471 3.98913 4.34207 4.38678 4.63289 4.68301 4.76829 4.85251 4.89009 5.02434 5.06650 5.21003 5.28904 5.33873 5.46909 5.62317 5.76073 5.83397 5.91219 5.99764 6.10208 6.30209 6.34582 6.58776 6.80827 7.01027 7.64150 7.79344 8.11709 8.36129 8.80867 10.40912 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003533 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.725788 B = 7923.804086 C = 9715.698408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.025 3.975 3 N -0.475 5.475 4 C 0.188 3.812 5 N -0.613 5.613 6 C 0.517 3.483 7 O -0.498 6.498 8 C -0.140 4.140 9 H 0.119 0.881 10 C 0.065 3.935 11 O -0.373 6.373 12 C 0.076 3.924 13 H 0.084 0.916 14 C -0.164 4.164 15 C -0.134 4.134 16 S 0.213 5.787 17 C -0.239 4.239 18 S 0.089 5.911 19 C -0.623 4.623 20 H 0.083 0.917 21 C 0.046 3.954 22 N -0.869 5.869 23 Si 1.081 2.919 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.278 1.278 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.415 0.585 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.688 17.916 -0.202 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 N -0.197 5.197 4 C -0.182 4.182 5 N -0.262 5.262 6 C 0.301 3.699 7 O -0.372 6.372 8 C -0.161 4.161 9 H 0.137 0.863 10 C -0.013 4.013 11 O -0.293 6.293 12 C 0.018 3.982 13 H 0.102 0.898 14 C -0.221 4.221 15 C -0.171 4.171 16 S 0.458 5.542 17 C -0.475 4.475 18 S 0.338 5.662 19 C -0.771 4.771 20 H 0.101 0.899 21 C -0.165 4.165 22 N -0.501 5.501 23 Si 0.905 3.095 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.204 1.204 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.207 15.116 -0.319 18.242 hybrid contribution -0.382 2.454 0.204 2.492 sum 9.825 17.571 -0.115 20.131 Atomic orbital electron populations 1.20136 0.87930 1.02223 1.01908 1.19092 0.96808 0.84566 1.11217 1.65842 1.02833 1.32246 1.18751 1.23872 0.89968 0.93109 1.11287 1.42423 1.04368 1.08156 1.71251 1.20392 0.81674 0.90989 0.76797 1.90722 1.76950 1.22283 1.47194 1.22970 0.95336 0.96188 1.01626 0.86308 1.23321 0.86685 0.96844 0.94408 1.88458 1.17093 1.52295 1.71419 1.22791 0.90172 0.92247 0.92959 0.89795 1.22151 0.98464 1.01374 1.00146 1.23156 0.91003 0.99764 1.03224 1.85911 1.01342 0.94998 1.71999 1.28328 1.01413 1.05224 1.12579 1.82517 1.12935 0.87574 1.83208 1.24140 0.92946 0.96380 1.63670 0.89915 1.26199 1.04566 0.94119 0.91636 1.70977 0.98204 1.39066 1.41873 0.83363 0.72543 0.76017 0.77604 1.19821 1.20431 1.20424 0.91736 0.91705 0.91100 0.74711 0.91335 0.88630 0.91911 0.91836 0.91213 0.89126 0.88378 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.03 0.52 6.73 -83.96 -0.57 -0.04 16 3 N -0.48 -9.25 10.55 -9.78 -0.10 -9.35 16 4 C 0.19 3.48 8.40 -87.19 -0.73 2.75 16 5 N -0.61 -8.28 5.40 -11.78 -0.06 -8.34 16 6 C 0.52 6.74 7.11 -10.99 -0.08 6.66 16 7 O -0.50 -8.51 13.22 5.55 0.07 -8.43 16 8 C -0.14 -1.22 3.49 -89.53 -0.31 -1.53 16 9 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.06 0.54 7.25 38.19 0.28 0.82 16 11 O -0.37 -3.64 11.02 -35.23 -0.39 -4.02 16 12 C 0.08 0.61 4.16 -26.01 -0.11 0.50 16 13 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 14 C -0.16 -1.24 9.44 37.16 0.35 -0.89 16 15 C -0.13 -1.17 5.70 -24.79 -0.14 -1.31 16 16 S 0.21 4.61 18.35 -107.50 -1.97 2.64 16 17 C -0.24 -5.45 6.67 29.46 0.20 -5.25 16 18 S 0.09 2.20 19.77 -107.50 -2.12 0.07 16 19 C -0.62 -17.04 9.26 30.80 0.29 -16.75 16 20 H 0.08 2.25 5.97 -52.48 -0.31 1.94 16 21 C 0.05 1.27 5.49 -17.49 -0.10 1.17 16 22 N -0.87 -24.79 13.68 55.47 0.76 -24.03 16 23 Si 1.08 23.90 29.91 -169.99 -5.08 18.82 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 30 H 0.42 4.11 8.82 -40.82 -0.36 3.75 16 31 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.04 7.06 -51.93 -0.37 0.67 16 38 H 0.28 7.80 7.12 -40.82 -0.29 7.51 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -32.43 344.59 -9.01 -41.44 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.73 Total: 0.61 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.56 Total: -14.58 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.59 Total: -41.73 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.31 Total: -12.46 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -4.10 Total: 2.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.43 -9.01 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.940 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds